RNA–Protein interactions for RNA: ENST00000313860.11

LIMCH1-201, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIMCH1, Length 6,165 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-201ENST00000313860 MYO1DO94832 1006 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 CCNB2O95067 398 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 ACADMP11310 421 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 MAGEA10P43363 369 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 PLD1Q13393 1074 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 ZNF846Q147U1 533 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 UAP1L1Q3KQV9 507 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 HERC4Q5GLZ8 1057 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 UBXN11Q5T124 520 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 R3HCC1LQ7Z5L2 792 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 FAM210AQ96ND0 272 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 PUS7LQ9H0K6 701 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 KDM4CQ9H3R0 1056 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 DSN1Q9H410 356 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 KLC4Q9NSK0 619 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 CMTM6Q9NX76 183 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 HMGXB4Q9UGU5 601 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 NPIPA1Q9UND3 350 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 YARS2Q9Y2Z4 477 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 REXO2Q9Y3B8 237 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 SNX8Q9Y5X2 465 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 F13A1P00488 732 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 ZNF12P17014 697 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 POLR2BP30876 1174 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 CHKAP35790 457 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 VSNL1P62760 191 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 ATP8B2P98198 1209 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 PPIL2Q13356 520 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 EIF4A2Q14240 407 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 CARTPTQ16568 116 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 TRIM74Q86UV6 250 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 TRIM73Q86UV7 250 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 HAVCR1Q96D42 359 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 ADI1Q9BV57 179 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 FARSAQ9Y285 508 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 ZMPSTE24O75844 475 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 SOAT1P35610 550 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 CACNB1Q02641 598 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 CHRNA2Q15822 529 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 AASDHQ4L235 1098 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 SFMBT2Q5VUG0 894 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 PDXDC2PQ6P474 469 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 BHLHB9Q6PI77 547 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 RBM23Q86U06 439 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 KBTBD2Q8IY47 623 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 C17orf80Q9BSJ5 609 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 AGXT2Q9BYV1 514 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 TRIM54Q9BYV2 358 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 TTYH1Q9H313 450 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 RC3H2Q9HBD1 1191 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 FAM105AQ9NUU6 356 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 TUBA8Q9NY65 449 aaPredicted RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 HFM1A2PYH4 1435 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 CCT8L1PA6NM43 557 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 CLCA1A8K7I4 914 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 PTCD1O75127 700 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 CMPK1P30085 196 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 INSCQ1MX18 579 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 SLFNL1Q499Z3 407 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 THEMIS2Q5TEJ8 643 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 SARM1Q6SZW1 724 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 SERAC1Q96JX3 654 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 PANX2Q96RD6 677 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 PSD2Q9BQI7 771 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 VTA1Q9NP79 307 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 NPHS2Q9NP85 383 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 IMPAD1Q9NX62 359 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 ADD3Q9UEY8 706 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 KLHL3Q9UH77 587 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 RSL24D1Q9UHA3 163 aaKnown RBP7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 NARFQ9UHQ1 456 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 NCKAP1Q9Y2A7 1128 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 SPATA31E1Q6ZUB1 1445 aa7.98□□□□□ -1.13
LIMCH1-201ENST00000313860 IKBKBO14920 756 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 SSX5O60225 188 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 SIN3BO75182 1162 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 ENO1P06733 434 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 ALOX15P16050 662 aaPredicted RBP7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 GPTP24298 496 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 HNRNPMP52272 730 aaKnown RBP eCLIP7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 MRPS22P82650 360 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 PRKCQQ04759 706 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 NR1H3Q13133 447 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 PLCL1Q15111 1095 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 CCDC58Q4VC31 144 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 EGFL8Q99944 293 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 ALG1Q9BT22 464 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 ANAPC2Q9UJX6 822 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 MAPRE3Q9UPY8 281 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 A0A075B6Q4 140 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 NFKB1P19838 968 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 CCNA2P20248 432 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 WARSP23381 471 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 GADD45AP24522 165 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 ADARP55265 1226 aaKnown RBP7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 LRRC63Q05C16 580 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 NELFCDQ8IXH7 590 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 ZBED8Q8IZ13 594 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 RDM1Q8NG50 284 aa7.97□□□□□ -1.13
LIMCH1-201ENST00000313860 NEDD1Q8NHV4 660 aa7.97□□□□□ -1.13
Retrieved 100 of 20,778 RNA–protein pairs in 21.5 ms