RNA–Protein interactions for RNA: ENST00000306726.6

PTPN9-201, Transcript of protein tyrosine phosphatase, non-receptor type 9, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene PTPN9, Length 3,862 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPN9-201ENST00000306726 LIG4P49917 911 aa15.44■□□□□ 0.06
PTPN9-201ENST00000306726 HIRAP54198 1017 aaPredicted RBP15.44■□□□□ 0.06
PTPN9-201ENST00000306726 BRDTQ58F21 947 aaPredicted RBP15.44■□□□□ 0.06
PTPN9-201ENST00000306726 CASC4Q6P4E1 433 aa15.44■□□□□ 0.06
PTPN9-201ENST00000306726 ARMC9Q7Z3E5 817 aa15.44■□□□□ 0.06
PTPN9-201ENST00000306726 IL31RAQ8NI17 732 aa15.44■□□□□ 0.06
PTPN9-201ENST00000306726 TEPSINQ96N21 525 aa15.44■□□□□ 0.06
PTPN9-201ENST00000306726 TMEM39BQ9GZU3 492 aa15.44■□□□□ 0.06
PTPN9-201ENST00000306726 AS3MTQ9HBK9 375 aa15.44■□□□□ 0.06
PTPN9-201ENST00000306726 NKX1-2Q9UD57 310 aaPredicted RBP15.44■□□□□ 0.06
PTPN9-201ENST00000306726 ZFP69BQ9UJL9 534 aa15.44■□□□□ 0.06
PTPN9-201ENST00000306726 SYNJ2BP-COX16A0A087WUM0 186 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 ATP5DP30049 168 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 STRN3Q13033 797 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 RRP1BQ14684 758 aaKnown RBP15.43■□□□□ 0.06
PTPN9-201ENST00000306726 RHPN2Q8IUC4 686 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 TMEM143Q96AN5 459 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 SNF8Q96H20 258 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 KIAA1683Q9H0B3 1180 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 KDM4CQ9H3R0 1056 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 CYP4F11Q9HBI6 524 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 COX16Q9P0S2 106 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 TMEM59LQ9UK28 342 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 MYH7BA7E2Y1 1941 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 ADRB2P07550 413 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 RARGP13631 454 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 MARK3P27448 753 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 MAGEA4P43358 317 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 IREB2P48200 963 aaKnown RBP15.43■□□□□ 0.06
PTPN9-201ENST00000306726 TAF1BQ53T94 588 aaPredicted RBP15.43■□□□□ 0.06
PTPN9-201ENST00000306726 LMNTD2Q8IXW0 634 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 ETNPPLQ8TBG4 499 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 ATXN2LQ8WWM7 1075 aaKnown RBP15.43■□□□□ 0.06
PTPN9-201ENST00000306726 NINJ2Q9NZG7 142 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 NEU2Q9Y3R4 380 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 SIPA1L1O43166 1804 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 SAT1P21673 171 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 RPA3P35244 121 aaPredicted RBP15.43■□□□□ 0.06
PTPN9-201ENST00000306726 CFAP157Q5JU67 520 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 NOL9Q5SY16 702 aaKnown RBP15.43■□□□□ 0.06
PTPN9-201ENST00000306726 FYB2Q5VWT5 728 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 ANKRD35Q8N283 1001 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 FAM20AQ96MK3 541 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 HERPUD2Q9BSE4 406 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 ZDHHC18Q9NUE0 388 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 CPSF2Q9P2I0 782 aaKnown RBP15.43■□□□□ 0.06
PTPN9-201ENST00000306726 ZNF112Q9UJU3 913 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 IGKV6D-41A0A0C4DH26 115 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 MIF4GDA9UHW6 222 aaKnown RBP15.43■□□□□ 0.06
PTPN9-201ENST00000306726 ATP2A1O14983 1001 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 MMP13P45452 471 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 RASSF2P50749 326 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 EPHB1P54762 984 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 RASIP1Q5U651 963 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 BZW1Q7L1Q6 419 aaKnown RBP15.43■□□□□ 0.06
PTPN9-201ENST00000306726 RAB20Q9NX57 234 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 CHMP2BQ9UQN3 213 aa15.43■□□□□ 0.06
PTPN9-201ENST00000306726 MRPL42Q9Y6G3 142 aaKnown RBP15.43■□□□□ 0.06
PTPN9-201ENST00000306726 TCF4P15884 667 aa15.42■□□□□ 0.06
PTPN9-201ENST00000306726 GAD2Q05329 585 aa15.42■□□□□ 0.06
PTPN9-201ENST00000306726 TMEM154Q6P9G4 183 aa15.42■□□□□ 0.06
PTPN9-201ENST00000306726 OTOP1Q7RTM1 612 aa15.42■□□□□ 0.06
PTPN9-201ENST00000306726 EPS8L1Q8TE68 723 aa15.42■□□□□ 0.06
PTPN9-201ENST00000306726 PYROXD1Q8WU10 500 aa15.42■□□□□ 0.06
PTPN9-201ENST00000306726 RSAD2Q8WXG1 361 aa15.42■□□□□ 0.06
PTPN9-201ENST00000306726 ZNF317Q96PQ6 595 aaPredicted RBP15.42■□□□□ 0.06
PTPN9-201ENST00000306726 NAP1L4Q99733 375 aaKnown RBP15.42■□□□□ 0.06
PTPN9-201ENST00000306726 FBXO6Q9NRD1 293 aaPredicted RBP15.42■□□□□ 0.06
PTPN9-201ENST00000306726 KCNH7Q9NS40 1196 aa15.42■□□□□ 0.06
PTPN9-201ENST00000306726 RNF19AQ9NV58 838 aa15.42■□□□□ 0.06
PTPN9-201ENST00000306726 CLEC11AQ9Y240 323 aa15.42■□□□□ 0.06
PTPN9-201ENST00000306726 GREB1LQ9C091 1923 aaPredicted RBP15.42■□□□□ 0.06
PTPN9-201ENST00000306726 FOSP01100 380 aaPredicted RBP15.42■□□□□ 0.06
PTPN9-201ENST00000306726 WEE2P0C1S8 567 aa15.42■□□□□ 0.06
PTPN9-201ENST00000306726 CTCFP49711 727 aaPredicted RBP15.42■□□□□ 0.06
PTPN9-201ENST00000306726 PCNX4Q63HM2 1172 aa15.42■□□□□ 0.06
PTPN9-201ENST00000306726 ATXN7L3BQ96GX2 97 aa15.42■□□□□ 0.06
PTPN9-201ENST00000306726 FAM161BQ96MY7 647 aa15.42■□□□□ 0.06
PTPN9-201ENST00000306726 GYG2O15488 501 aa15.42■□□□□ 0.06
PTPN9-201ENST00000306726 EGFRP00533 1210 aa15.42■□□□□ 0.06
PTPN9-201ENST00000306726 FOXN2P32314 431 aa15.42■□□□□ 0.06
PTPN9-201ENST00000306726 DMP1Q13316 513 aaPredicted RBP15.42■□□□□ 0.06
PTPN9-201ENST00000306726 ZNF572Q7Z3I7 529 aaPredicted RBP15.42■□□□□ 0.06
PTPN9-201ENST00000306726 ECHDC2Q86YB7 292 aa15.42■□□□□ 0.06
PTPN9-201ENST00000306726 ZBTB45Q96K62 511 aaPredicted RBP15.42■□□□□ 0.06
PTPN9-201ENST00000306726 KREMEN1Q96MU8 473 aa15.42■□□□□ 0.06
PTPN9-201ENST00000306726 OSBPL8Q9BZF1 889 aa15.42■□□□□ 0.06
PTPN9-201ENST00000306726 PPARGC1AQ9UBK2 798 aaKnown RBP15.42■□□□□ 0.06
PTPN9-201ENST00000306726 ZHX2Q9Y6X8 837 aa15.42■□□□□ 0.06
PTPN9-201ENST00000306726 ENO1P06733 434 aaKnown RBP15.41■□□□□ 0.06
PTPN9-201ENST00000306726 ADRA1DP25100 572 aa15.41■□□□□ 0.06
PTPN9-201ENST00000306726 CNGA1P29973 690 aa15.41■□□□□ 0.06
PTPN9-201ENST00000306726 CAP2P40123 477 aa15.41■□□□□ 0.06
PTPN9-201ENST00000306726 TFAMQ00059 246 aaKnown RBP15.41■□□□□ 0.06
PTPN9-201ENST00000306726 YTHDF3Q7Z739 585 aaKnown RBP15.41■□□□□ 0.06
PTPN9-201ENST00000306726 RUBCNQ92622 972 aa15.41■□□□□ 0.06
PTPN9-201ENST00000306726 MKL1Q969V6 931 aa15.41■□□□□ 0.06
PTPN9-201ENST00000306726 SPATS2LQ9NUQ6 558 aaKnown RBP15.41■□□□□ 0.06
PTPN9-201ENST00000306726 CCDC78A2IDD5 438 aa15.41■□□□□ 0.06
PTPN9-201ENST00000306726 PEX10O60683 326 aa15.41■□□□□ 0.06
Retrieved 100 of 20,778 RNA–protein pairs in 41.1 ms