RNA–Protein interactions for RNA: ENST00000302528.11

CLIP1-201, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

APPRIS P4 TSL 5 BASIC

Gene CLIP1, Length 5,833 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-201ENST00000302528 SPACA6W5XKT8 324 aa10.87□□□□□ -0.67
CLIP1-201ENST00000302528 GH2P01242 217 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 APRTP07741 180 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 SERPINB9P50453 376 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 ANXA11P50995 505 aaKnown RBP10.86□□□□□ -0.67
CLIP1-201ENST00000302528 FAM83BQ5T0W9 1011 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 CHSY1Q86X52 802 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 DDHD1Q8NEL9 900 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 RAD54LQ92698 747 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 ECSITQ9BQ95 431 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 ADAM33Q9BZ11 813 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 SH3GLB2Q9NR46 395 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 PCMTD2Q9NV79 361 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 GABBR1Q9UBS5 961 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 IQGAP3Q86VI3 1631 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 EDC4Q6P2E9 1401 aaKnown RBP10.86□□□□□ -0.67
CLIP1-201ENST00000302528 HEATR9A2RTY3 570 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 BIRC5O15392 142 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 PCSK7Q16549 785 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 NDUFA5Q16718 116 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 EFL1Q7Z2Z2 1120 aaKnown RBP10.86□□□□□ -0.67
CLIP1-201ENST00000302528 CALML6Q8TD86 181 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 SCFD2Q8WU76 684 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 IL17RAQ96F46 866 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 CLEC4MQ9H2X3 399 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-201ENST00000302528 ZSWIM5Q9P217 1185 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 LOC102724428A0A0B4J2F2 783 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 PIPSLA2A3N6 862 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 H2AFYO75367 372 aaKnown RBP10.86□□□□□ -0.67
CLIP1-201ENST00000302528 DGKIO75912 1065 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 RRM2P31350 389 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 SFNP31947 248 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 KCNJ6P48051 423 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 AP3M2P53677 418 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 SIK1P57059 783 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 VSNL1P62760 191 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 COASYQ13057 564 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 COG2Q14746 738 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 NCF4Q15080 339 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 KNOP1Q1ED39 458 aaKnown RBP10.86□□□□□ -0.67
CLIP1-201ENST00000302528 DALRD3Q5D0E6 543 aaKnown RBP10.86□□□□□ -0.67
CLIP1-201ENST00000302528 CNGB3Q9NQW8 809 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 PFASO15067 1338 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 CYP2D7A0A087X1C5 515 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 PHKG2P15735 406 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 KYAT1Q16773 422 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 DUOXA2Q1HG44 320 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 P3H1Q32P28 736 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 GPD1LQ8N335 351 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 TRIM63Q969Q1 353 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 OMA1Q96E52 524 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 MRPL48Q96GC5 212 aaKnown RBP10.86□□□□□ -0.67
CLIP1-201ENST00000302528 COQ7Q99807 217 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 CARD9Q9H257 536 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 MTIF3Q9H2K0 278 aaKnown RBP10.86□□□□□ -0.67
CLIP1-201ENST00000302528 CAAP1Q9H8G2 361 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 COPRSQ9NQ92 184 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 CAMSAP3Q9P1Y5 1249 aaPredicted RBP10.86□□□□□ -0.67
CLIP1-201ENST00000302528 KIAA0232Q92628 1395 aa10.86□□□□□ -0.67
CLIP1-201ENST00000302528 E9PBE3 544 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 TRIM49P0CI25 452 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 TRIM49CP0CI26 452 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 IRF1P10914 325 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 FEN1P39748 380 aaKnown RBP10.85□□□□□ -0.67
CLIP1-201ENST00000302528 CNPY4Q8N129 248 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 UXS1Q8NBZ7 420 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 ATL2Q8NHH9 583 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 SPATA33Q96N06 139 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 GALNT8Q9NY28 637 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 CLASP1Q7Z460 1538 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 ERBB4Q15303 1308 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 KCNQ3O43525 872 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 ATP1A1P05023 1023 aaKnown RBP10.85□□□□□ -0.67
CLIP1-201ENST00000302528 UBTFL6P0CB48 400 aaPredicted RBP10.85□□□□□ -0.67
CLIP1-201ENST00000302528 TALDO1P37837 337 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 PSMC5P62195 406 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 IFNLR1Q8IU57 520 aaPredicted RBP10.85□□□□□ -0.67
CLIP1-201ENST00000302528 FAM45AQ8TCE6 357 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 DYRK3O43781 588 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 HPGDP15428 266 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 CHRM3P20309 590 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 IRX1P78414 480 aaPredicted RBP10.85□□□□□ -0.67
CLIP1-201ENST00000302528 SLC25A41Q8N5S1 370 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 KLHL11Q9NVR0 708 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 FEM1BQ9UK73 627 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 ADAM30Q9UKF2 790 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 SH3BP1Q9Y3L3 701 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 PITPNM2Q9BZ72 1349 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 SAC3D1A6NKF1 404 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 QARSP47897 775 aaKnown RBP10.85□□□□□ -0.67
CLIP1-201ENST00000302528 POU4F1Q01851 419 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 SNX17Q15036 470 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 ERFEQ4G0M1 354 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 ZNF589Q86UQ0 364 aaPredicted RBP10.85□□□□□ -0.67
CLIP1-201ENST00000302528 KRT35Q92764 455 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 GPR63Q9BZJ6 419 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 VIPAS39Q9H9C1 493 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 POLD4Q9HCU8 107 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 E2F8A0AVK6 867 aa10.85□□□□□ -0.67
CLIP1-201ENST00000302528 ZBTB5O15062 677 aa10.85□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 34 ms