RNA–Protein interactions for RNA: ENST00000297261.6

SHH-201, Transcript of sonic hedgehog, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHH, Length 4,454 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHH-201ENST00000297261 COILP38432 576 aaPredicted RBP16.2■□□□□ 0.18
SHH-201ENST00000297261 MAGEA4P43358 317 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 ZNF571Q7Z3V5 609 aaPredicted RBP16.2■□□□□ 0.18
SHH-201ENST00000297261 YTHDF3Q7Z739 585 aaKnown RBP16.2■□□□□ 0.18
SHH-201ENST00000297261 ERICH1Q86X53 443 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 GLIS2Q9BZE0 524 aaPredicted RBP16.2■□□□□ 0.18
SHH-201ENST00000297261 FBXO40Q9UH90 709 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 PHTF1Q9UMS5 762 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 REXO2Q9Y3B8 237 aaKnown RBP16.2■□□□□ 0.18
SHH-201ENST00000297261 AFG3L2Q9Y4W6 797 aa16.2■□□□□ 0.18
SHH-201ENST00000297261 TTC36A6NLP5 189 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 CYP11B2P19099 503 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 NPY5RQ15761 445 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 AGR3Q8TD06 166 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 ATG4AQ8WYN0 398 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 BTBD6Q96KE9 485 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 TTC4O95801 387 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 VCAM1P19320 739 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 LAMB3Q13751 1172 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 PNMA5Q96PV4 448 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 WWP1Q9H0M0 922 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 FZD1Q9UP38 647 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 HEY1Q9Y5J3 304 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 NPM3O75607 178 aaKnown RBP16.19■□□□□ 0.18
SHH-201ENST00000297261 NR3C2P08235 984 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 RARGP13631 454 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 SFNP31947 248 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 PSMC5P62195 406 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 ZC2HC1CQ53FD0 456 aaPredicted RBP16.19■□□□□ 0.18
SHH-201ENST00000297261 GRAMD4Q6IC98 578 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 ZBTB8OSQ8IWT0 167 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 CCDC138Q96M89 665 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 SERPINB12Q96P63 405 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 NGRNQ9NPE2 291 aaKnown RBP16.19■□□□□ 0.18
SHH-201ENST00000297261 GDF3Q9NR23 364 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 A6NJR5 290 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 FAM86B1E9PN63 330 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 ADAMTS3O15072 1205 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 HNRNPCL1O60812 293 aaKnown RBP16.19■□□□□ 0.18
SHH-201ENST00000297261 FAM86B2P0C5J1 330 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 ARP10275 920 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 KRT10P13645 584 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 CCNA1P78396 465 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 ITGB3BPQ13352 177 aaPredicted RBP16.19■□□□□ 0.18
SHH-201ENST00000297261 DNAJC18Q9H819 358 aa16.19■□□□□ 0.18
SHH-201ENST00000297261 ZBBXA8MT70 800 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 SNHG28P0DPA3 235 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 ANXA13P27216 316 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 TRADDQ15628 312 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 SPOPLQ6IQ16 392 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 NLRP9Q7RTR0 991 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 TATDN2Q93075 761 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 ACAP3Q96P50 834 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 VPS11Q9H270 941 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 CDC42EP4Q9H3Q1 356 aaKnown RBP16.18■□□□□ 0.18
SHH-201ENST00000297261 HESX1Q9UBX0 185 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 SUPT3HO75486 399 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 AP1G2O75843 785 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 BACE1P56817 501 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 PPP6R3Q5H9R7 873 aaPredicted RBP16.18■□□□□ 0.18
SHH-201ENST00000297261 DPP9Q86TI2 863 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 SLC13A5Q86YT5 568 aaPredicted RBP16.18■□□□□ 0.18
SHH-201ENST00000297261 MTMR9Q96QG7 549 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 SEL1LQ9UBV2 794 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 BAZ2AQ9UIF9 1905 aaKnown RBP16.18■□□□□ 0.18
SHH-201ENST00000297261 DUOX1Q9NRD9 1551 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 ZBTB17Q13105 803 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 CNGA3Q16281 694 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 TMEM237Q96Q45 408 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 DCLRE1BQ9H816 532 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 TLK1Q9UKI8 766 aa16.18■□□□□ 0.18
SHH-201ENST00000297261 BTAF1O14981 1849 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 PPP1R11O60927 126 aaPredicted RBP16.17■□□□□ 0.18
SHH-201ENST00000297261 ATP6V1B1P15313 513 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 RBM46Q8TBY0 533 aaKnown RBP16.17■□□□□ 0.18
SHH-201ENST00000297261 HEY2Q9UBP5 337 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 PCDHA10Q9Y5I2 948 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 MYH2Q9UKX2 1941 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 ASAP2O43150 1006 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 YWHABP31946 246 aaKnown RBP16.17■□□□□ 0.18
SHH-201ENST00000297261 OSTNP61366 133 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 KCNJ2P63252 427 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 KIAA0895Q8NCT3 520 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 FAM149B1Q96BN6 582 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 DTNBP1Q96EV8 351 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 TMEM117Q9H0C3 514 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 PAPPAQ13219 1627 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 ACADSP16219 412 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 ALCAMQ13740 583 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 KRT39Q6A163 491 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 HDAC11Q96DB2 347 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 NSL1Q96IY1 281 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 RIT2Q99578 217 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 DRC3Q9H069 523 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 LOC100653049A0A140TA62 436 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 KRT34O76011 436 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 P4HA1P13674 534 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 PON1P27169 355 aa16.17■□□□□ 0.18
SHH-201ENST00000297261 ATXN3P54252 364 aaPredicted RBP16.17■□□□□ 0.18
SHH-201ENST00000297261 EPC2Q52LR7 807 aa16.17■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 215.9 ms