RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 CHRNA2Q15822 529 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 SGO1Q5FBB7 561 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 LRRC8DQ7L1W4 858 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 CCDC162PA2VCL2 907 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 MED26O95402 600 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 GUCA1CO95843 209 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 CALB1P05937 261 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 POLR2MP0CAP2 368 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 TALDO1P37837 337 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 FAM111AQ96PZ2 611 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 C8orf4Q9NR00 106 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 E5RI56 91 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 DGUOKQ16854 277 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 MICALL2Q8IY33 904 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 ZSCAN18Q8TBC5 510 aaPredicted RBP12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 SULT1C3Q6IMI6 304 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 ZNF579Q8NAF0 562 aaKnown RBP12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 OR6P1Q8NGX9 317 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 SMARCAD1Q9H4L7 1026 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 ADAM30Q9UKF2 790 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 GSSP48637 474 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 IKBIPQ70UQ0 350 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 C7orf31Q8N865 590 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 AGAP11Q8TF27 550 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 ANKRD49Q8WVL7 239 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 GPBP1L1Q9HC44 474 aaPredicted RBP12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 ITGA8P53708 1063 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 NCKAP1LP55160 1127 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 RASA2Q15283 850 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 STXBP2Q15833 593 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 RSPH1Q8WYR4 309 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 SEMA6AQ9H2E6 1030 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 XPO7Q9UIA9 1087 aaKnown RBP12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 FOXN3O00409 490 aaPredicted RBP12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 SKA1Q96BD8 255 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 EAF2Q96CJ1 260 aaPredicted RBP12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 AIPL1Q9NZN9 384 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 GGA1Q9UJY5 639 aa12.28□□□□□ -0.44
SHROOM3-201ENST00000296043 SESN2P58004 480 aaPredicted RBP12.27□□□□□ -0.44
SHROOM3-201ENST00000296043 ZNF200P98182 395 aaPredicted RBP12.27□□□□□ -0.44
SHROOM3-201ENST00000296043 KRT77Q7Z794 578 aa12.27□□□□□ -0.44
SHROOM3-201ENST00000296043 CHSY1Q86X52 802 aa12.27□□□□□ -0.44
SHROOM3-201ENST00000296043 CENPTQ96BT3 561 aa12.27□□□□□ -0.44
SHROOM3-201ENST00000296043 TMBIM4Q9HC24 238 aa12.27□□□□□ -0.44
SHROOM3-201ENST00000296043 CCDC59Q9P031 241 aaKnown RBP12.27□□□□□ -0.44
SHROOM3-201ENST00000296043 RALBP11234 206 aa12.27□□□□□ -0.44
SHROOM3-201ENST00000296043 YY1P25490 414 aa12.27□□□□□ -0.44
SHROOM3-201ENST00000296043 ADORA1P30542 326 aa12.27□□□□□ -0.44
SHROOM3-201ENST00000296043 PPARGP37231 505 aaPredicted RBP12.27□□□□□ -0.44
SHROOM3-201ENST00000296043 PCDHA1Q9Y5I3 950 aa12.27□□□□□ -0.44
SHROOM3-201ENST00000296043 ABCC2Q92887 1545 aa12.27□□□□□ -0.44
SHROOM3-201ENST00000296043 CSNK2BP67870 215 aa12.27□□□□□ -0.44
SHROOM3-201ENST00000296043 RIBC1Q8N443 379 aaPredicted RBP12.27□□□□□ -0.44
SHROOM3-201ENST00000296043 RDM1Q8NG50 284 aa12.27□□□□□ -0.44
SHROOM3-201ENST00000296043 STK32AQ8WU08 396 aa12.27□□□□□ -0.44
SHROOM3-201ENST00000296043 PYDC1Q8WXC3 89 aa12.27□□□□□ -0.44
SHROOM3-201ENST00000296043 KCNG1Q9UIX4 513 aa12.27□□□□□ -0.44
SHROOM3-201ENST00000296043 CPSF3Q9UKF6 684 aaKnown RBP12.27□□□□□ -0.44
SHROOM3-201ENST00000296043 USP17L12C9JPN9 530 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 USP17L21D6R901 530 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 SH2B2O14492 632 aaPredicted RBP12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 SSNA1O43805 119 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 PDE9AO76083 593 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 EXOSC10Q01780 885 aaKnown RBP12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 KCNH2Q12809 1159 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 RASSF6Q6ZTQ3 369 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 COL23A1Q86Y22 540 aaPredicted RBP12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 ACSBG1Q96GR2 724 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 DGCR6LQ9BY27 220 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 MYLK2Q9H1R3 596 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 NEU2Q9Y3R4 380 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 ACEP12821 1306 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 PRPF4O43172 522 aaKnown RBP eCLIP12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 PTPN4P29074 926 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 UBXN2AP68543 259 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 SLC29A2Q14542 456 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 PGBD2Q6P3X8 592 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 KRT74Q7RTS7 529 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 E2F7Q96AV8 911 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 PMF1-BGLAPU3KQ54 211 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 A0A1W2PQ72 361 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 AREL1O15033 823 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 CBX6O95503 412 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 MAGEA4P43358 317 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 RAD9BQ6WBX8 426 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 SYDE1Q6ZW31 735 aaPredicted RBP12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 LRRC20Q8TCA0 184 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 RPAP1Q9BWH6 1393 aaPredicted RBP12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 TEKT3Q9BXF9 490 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 PLGRKTQ9HBL7 147 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 OPLAHO14841 1288 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 KPNA1P52294 538 aaPredicted RBP12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 ISCUQ9H1K1 167 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 VTA1Q9NP79 307 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 PSMD14O00487 310 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 ZNF806P0C7X5 589 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 ACCSLQ4AC99 568 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 PCNX4Q63HM2 1172 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 DEFB107AQ8IZN7 70 aa12.27□□□□□ -0.45
SHROOM3-201ENST00000296043 TBCKQ8TEA7 893 aa12.27□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 16.9 ms