RNA–Protein interactions for RNA: ENST00000265560.8

USP4-201, Transcript of ubiquitin specific peptidase 4, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene USP4, Length 3,126 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-201ENST00000265560 EFCAB8A8MWE9 144 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 CHRNA1P02708 482 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 TMEM253P0C7T8 217 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 CD19P15391 556 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 MESDQ14696 234 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 SURF1Q15526 300 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 ARRDC4Q8NCT1 418 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 RFFLQ8WZ73 363 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 TFAP2BQ92481 460 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 TWNKQ96RR1 684 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 ISCUQ9H1K1 167 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 ANO9A1A5B4 782 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 ZMYND10O75800 440 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 ZNF667Q5HYK9 610 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 PEX26Q7Z412 305 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 ZNF606Q8WXB4 792 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 HPDLQ96IR7 371 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 C11orf70Q9BRQ4 267 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 AP3M2P53677 418 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 ENPEPQ07075 957 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 PTGISQ16647 500 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 MEI1Q5TIA1 1274 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 FBXO38Q6PIJ6 1188 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 CXorf38Q8TB03 319 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 LPPQ93052 612 aa17.63■□□□□ 0.41
USP4-201ENST00000265560 HMGCRP04035 888 aa17.62■□□□□ 0.41
USP4-201ENST00000265560 INHAP05111 366 aa17.62■□□□□ 0.41
USP4-201ENST00000265560 TBXAS1P24557 533 aaPredicted RBP17.62■□□□□ 0.41
USP4-201ENST00000265560 GRM5P41594 1212 aa17.62■□□□□ 0.41
USP4-201ENST00000265560 CRYBB1P53674 252 aaPredicted RBP17.62■□□□□ 0.41
USP4-201ENST00000265560 WHAMMP3Q1A5X7 153 aa17.62■□□□□ 0.41
USP4-201ENST00000265560 RNF169Q8NCN4 708 aa17.62■□□□□ 0.41
USP4-201ENST00000265560 AGO3Q9H9G7 860 aaKnown RBP17.62■□□□□ 0.41
USP4-201ENST00000265560 ST3GAL5Q9UNP4 418 aa17.62■□□□□ 0.41
USP4-201ENST00000265560 HCRTO43612 131 aa17.62■□□□□ 0.41
USP4-201ENST00000265560 GPC5P78333 572 aa17.62■□□□□ 0.41
USP4-201ENST00000265560 RSRC2Q7L4I2 434 aaKnown RBP17.62■□□□□ 0.41
USP4-201ENST00000265560 FMNL3Q8IVF7 1028 aa17.62■□□□□ 0.41
USP4-201ENST00000265560 CEP112Q8N8E3 955 aa17.62■□□□□ 0.41
USP4-201ENST00000265560 GHRP10912 638 aa17.61■□□□□ 0.41
USP4-201ENST00000265560 RRM1P23921 792 aa17.61■□□□□ 0.41
USP4-201ENST00000265560 ANXA13P27216 316 aa17.61■□□□□ 0.41
USP4-201ENST00000265560 MRPS6P82932 125 aaKnown RBP17.61■□□□□ 0.41
USP4-201ENST00000265560 CLEC16AQ2KHT3 1053 aa17.61■□□□□ 0.41
USP4-201ENST00000265560 UBXN11Q5T124 520 aa17.61■□□□□ 0.41
USP4-201ENST00000265560 GOLGA1Q92805 767 aa17.61■□□□□ 0.41
USP4-201ENST00000265560 LPIN3Q9BQK8 851 aa17.61■□□□□ 0.41
USP4-201ENST00000265560 NUP85Q9BW27 656 aa17.61■□□□□ 0.41
USP4-201ENST00000265560 ASB7Q9H672 318 aa17.61■□□□□ 0.41
USP4-201ENST00000265560 CNOT8Q9UFF9 292 aaKnown RBP17.61■□□□□ 0.41
USP4-201ENST00000265560 NOD1Q9Y239 953 aa17.61■□□□□ 0.41
USP4-201ENST00000265560 DAAM1Q9Y4D1 1078 aa17.61■□□□□ 0.41
USP4-201ENST00000265560 KIAA0100Q14667 2235 aaKnown RBP17.61■□□□□ 0.41
USP4-201ENST00000265560 RPS6KA5O75582 802 aa17.61■□□□□ 0.41
USP4-201ENST00000265560 RPS6KA1Q15418 735 aa17.61■□□□□ 0.41
USP4-201ENST00000265560 CCDC181Q5TID7 509 aa17.61■□□□□ 0.41
USP4-201ENST00000265560 ADAT2Q7Z6V5 191 aaKnown RBP17.61■□□□□ 0.41
USP4-201ENST00000265560 UPF3AQ9H1J1 476 aaKnown RBP17.61■□□□□ 0.41
USP4-201ENST00000265560 DDX20Q9UHI6 824 aaKnown RBP17.61■□□□□ 0.41
USP4-201ENST00000265560 HOXC8P31273 242 aa17.61■□□□□ 0.41
USP4-201ENST00000265560 YARSP54577 528 aaKnown RBP17.61■□□□□ 0.41
USP4-201ENST00000265560 ACAD10Q6JQN1 1059 aa17.61■□□□□ 0.41
USP4-201ENST00000265560 AADACL2Q6P093 401 aa17.61■□□□□ 0.41
USP4-201ENST00000265560 TRPV6Q9H1D0 765 aa17.61■□□□□ 0.41
USP4-201ENST00000265560 PCDH10Q9P2E7 1040 aa17.61■□□□□ 0.41
USP4-201ENST00000265560 IPPQ9Y573 584 aa17.61■□□□□ 0.41
USP4-201ENST00000265560 PIK3R2O00459 728 aa17.6■□□□□ 0.41
USP4-201ENST00000265560 MARCKSL1P49006 195 aa17.6■□□□□ 0.41
USP4-201ENST00000265560 ZNF211Q13398 564 aaPredicted RBP17.6■□□□□ 0.41
USP4-201ENST00000265560 HSP90AA2PQ14568 343 aaPredicted RBP17.6■□□□□ 0.41
USP4-201ENST00000265560 MMS22LQ6ZRQ5 1243 aa17.6■□□□□ 0.41
USP4-201ENST00000265560 KLHDC9Q8NEP7 349 aa17.6■□□□□ 0.41
USP4-201ENST00000265560 ANKRD7Q92527 254 aa17.6■□□□□ 0.41
USP4-201ENST00000265560 TRIM17Q9Y577 477 aa17.6■□□□□ 0.41
USP4-201ENST00000265560 SNX9Q9Y5X1 595 aa17.6■□□□□ 0.41
USP4-201ENST00000265560 M0QZ92 97 aa17.6■□□□□ 0.41
USP4-201ENST00000265560 GZMAP12544 262 aa17.6■□□□□ 0.41
USP4-201ENST00000265560 UNGP13051 313 aaPredicted RBP17.6■□□□□ 0.41
USP4-201ENST00000265560 ITGA7Q13683 1181 aa17.6■□□□□ 0.41
USP4-201ENST00000265560 CCSAPQ6IQ19 270 aaPredicted RBP17.6■□□□□ 0.41
USP4-201ENST00000265560 SMG8Q8ND04 991 aaKnown RBP17.6■□□□□ 0.41
USP4-201ENST00000265560 PNKPQ96T60 521 aa17.6■□□□□ 0.41
USP4-201ENST00000265560 TJP2Q9UDY2 1190 aa17.6■□□□□ 0.41
USP4-201ENST00000265560 PTCH2Q9Y6C5 1203 aa17.6■□□□□ 0.41
USP4-201ENST00000265560 HOXD10P28358 340 aa17.59■□□□□ 0.41
USP4-201ENST00000265560 CD52P31358 61 aa17.59■□□□□ 0.41
USP4-201ENST00000265560 NSFP46459 744 aaKnown RBP17.59■□□□□ 0.41
USP4-201ENST00000265560 ACLYP53396 1101 aa17.59■□□□□ 0.41
USP4-201ENST00000265560 SOX4Q06945 474 aaPredicted RBP17.59■□□□□ 0.41
USP4-201ENST00000265560 DCAF4L1Q3SXM0 396 aa17.59■□□□□ 0.41
USP4-201ENST00000265560 TAF2Q6P1X5 1199 aa17.59■□□□□ 0.41
USP4-201ENST00000265560 NT5DC3Q86UY8 548 aa17.59■□□□□ 0.41
USP4-201ENST00000265560 C12orf29Q8N999 325 aa17.59■□□□□ 0.41
USP4-201ENST00000265560 C1orf131Q8NDD1 294 aaKnown RBP17.59■□□□□ 0.41
USP4-201ENST00000265560 SNX27Q96L92 541 aa17.59■□□□□ 0.41
USP4-201ENST00000265560 PARD6BQ9BYG5 372 aa17.59■□□□□ 0.41
USP4-201ENST00000265560 INTUQ9ULD6 942 aa17.59■□□□□ 0.41
USP4-201ENST00000265560 CEP104O60308 925 aa17.59■□□□□ 0.41
USP4-201ENST00000265560 KIF4AO95239 1232 aa17.59■□□□□ 0.41
USP4-201ENST00000265560 CDC42EP1Q00587 391 aa17.59■□□□□ 0.41
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms