RNA–Protein interactions for RNA: ENST00000264010.8

CTCF-201, Transcript of CCCTC-binding factor, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CTCF, Length 3,939 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-201ENST00000264010 RRM1P23921 792 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 SLCO1A2P46721 670 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 KRT17Q04695 432 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 TRADDQ15628 312 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 SGSM1Q2NKQ1 1148 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 METTL7BQ6UX53 244 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 SYDE1Q6ZW31 735 aaPredicted RBP17.28■□□□□ 0.36
CTCF-201ENST00000264010 MCOLN2Q8IZK6 566 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 ASAP3Q8TDY4 903 aa17.28■□□□□ 0.36
CTCF-201ENST00000264010 TXNP10599 105 aaKnown RBP17.27■□□□□ 0.36
CTCF-201ENST00000264010 SPOPLQ6IQ16 392 aa17.27■□□□□ 0.36
CTCF-201ENST00000264010 CCDC125Q86Z20 511 aa17.27■□□□□ 0.36
CTCF-201ENST00000264010 TRAF3IP1Q8TDR0 691 aaPredicted RBP17.27■□□□□ 0.36
CTCF-201ENST00000264010 ZNF668Q96K58 619 aaPredicted RBP17.27■□□□□ 0.36
CTCF-201ENST00000264010 SMARCAD1Q9H4L7 1026 aa17.27■□□□□ 0.36
CTCF-201ENST00000264010 INTS9Q9NV88 658 aaKnown RBP17.27■□□□□ 0.36
CTCF-201ENST00000264010 TOM1L1O75674 476 aa17.27■□□□□ 0.35
CTCF-201ENST00000264010 PYGMP11217 842 aa17.27■□□□□ 0.35
CTCF-201ENST00000264010 GLRA2P23416 452 aa17.27■□□□□ 0.35
CTCF-201ENST00000264010 PHKA2P46019 1235 aa17.27■□□□□ 0.35
CTCF-201ENST00000264010 SEZ6Q53EL9 994 aa17.27■□□□□ 0.35
CTCF-201ENST00000264010 TTMPQ5BVD1 217 aa17.27■□□□□ 0.35
CTCF-201ENST00000264010 GKAP1Q5VSY0 366 aaPredicted RBP17.27■□□□□ 0.35
CTCF-201ENST00000264010 RIOX2Q8IUF8 465 aa17.27■□□□□ 0.35
CTCF-201ENST00000264010 ATL2Q8NHH9 583 aa17.27■□□□□ 0.35
CTCF-201ENST00000264010 CCHCR1Q8TD31 782 aa17.27■□□□□ 0.35
CTCF-201ENST00000264010 HELQQ8TDG4 1101 aa17.27■□□□□ 0.35
CTCF-201ENST00000264010 ALG3Q92685 438 aa17.27■□□□□ 0.35
CTCF-201ENST00000264010 CYFIP2Q96F07 1278 aa17.27■□□□□ 0.35
CTCF-201ENST00000264010 ZBTB45Q96K62 511 aaPredicted RBP17.27■□□□□ 0.35
CTCF-201ENST00000264010 ARHGAP28Q9P2N2 729 aa17.27■□□□□ 0.35
CTCF-201ENST00000264010 PNMA3Q9UL41 463 aa17.27■□□□□ 0.35
CTCF-201ENST00000264010 COG5Q9UP83 839 aa17.27■□□□□ 0.35
CTCF-201ENST00000264010 COQ4Q9Y3A0 265 aa17.27■□□□□ 0.35
CTCF-201ENST00000264010 ADCY3O60266 1144 aa17.27■□□□□ 0.35
CTCF-201ENST00000264010 UBA1P22314 1058 aaKnown RBP17.27■□□□□ 0.35
CTCF-201ENST00000264010 VGLL4Q14135 290 aa17.27■□□□□ 0.35
CTCF-201ENST00000264010 ANKRD13AQ8IZ07 590 aa17.27■□□□□ 0.35
CTCF-201ENST00000264010 LRRC71Q8N4P6 559 aa17.27■□□□□ 0.35
CTCF-201ENST00000264010 RNF25Q96BH1 459 aaPredicted RBP17.27■□□□□ 0.35
CTCF-201ENST00000264010 AVENQ9NQS1 362 aaPredicted RBP17.27■□□□□ 0.35
CTCF-201ENST00000264010 COL11A2P13942 1736 aaPredicted RBP17.26■□□□□ 0.35
CTCF-201ENST00000264010 FZD9O00144 591 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 OGTO15294 1046 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 RNF8O76064 485 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 LSP1P33241 339 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 HADHBP55084 474 aaKnown RBP17.26■□□□□ 0.35
CTCF-201ENST00000264010 IRX1P78414 480 aaPredicted RBP17.26■□□□□ 0.35
CTCF-201ENST00000264010 TMC3Q7Z5M5 1100 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 ERO1BQ86YB8 467 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 LMO3Q8TAP4 145 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 SH3GL2Q99962 352 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 EPN3Q9H201 632 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 XPNPEP1Q9NQW7 623 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 ADARB2Q9NS39 739 aaKnown RBP17.26■□□□□ 0.35
CTCF-201ENST00000264010 ZNF112Q9UJU3 913 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 TMEM59LQ9UK28 342 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 TJP3O95049 919 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 BYSLQ13895 437 aaKnown RBP17.26■□□□□ 0.35
CTCF-201ENST00000264010 VSIG1Q86XK7 387 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 SNF8Q96H20 258 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 GBP5Q96PP8 586 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 ZNF541Q9H0D2 1346 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 ASB14A6NK59 587 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 RPS6KA5O75582 802 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 ZACNQ401N2 412 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 FBXO25Q8TCJ0 367 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 FAM129AQ9BZQ8 928 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 NIF3L1Q9GZT8 377 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 MIS12Q9H081 205 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 PABPC3Q9H361 631 aaKnown RBP17.26■□□□□ 0.35
CTCF-201ENST00000264010 NOCTQ9UK39 431 aaKnown RBP17.26■□□□□ 0.35
CTCF-201ENST00000264010 STRIP2Q9ULQ0 834 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 PPME1Q9Y570 386 aa17.26■□□□□ 0.35
CTCF-201ENST00000264010 FOCADQ5VW36 1801 aa17.25■□□□□ 0.35
CTCF-201ENST00000264010 ACSL3O95573 720 aa17.25■□□□□ 0.35
CTCF-201ENST00000264010 SKOR1P84550 965 aa17.25■□□□□ 0.35
CTCF-201ENST00000264010 TNFAIP2Q03169 654 aa17.25■□□□□ 0.35
CTCF-201ENST00000264010 TAF11Q15544 211 aa17.25■□□□□ 0.35
CTCF-201ENST00000264010 ZPBP2Q6X784 338 aa17.25■□□□□ 0.35
CTCF-201ENST00000264010 NLRP14Q86W24 1093 aa17.25■□□□□ 0.35
CTCF-201ENST00000264010 PLEKHO2Q8TD55 490 aa17.25■□□□□ 0.35
CTCF-201ENST00000264010 ARHGEF2Q92974 986 aaKnown RBP17.25■□□□□ 0.35
CTCF-201ENST00000264010 TMEM134Q9H6X4 195 aa17.25■□□□□ 0.35
CTCF-201ENST00000264010 ITIH2P19823 946 aa17.25■□□□□ 0.35
CTCF-201ENST00000264010 ABRAQ8N0Z2 381 aa17.25■□□□□ 0.35
CTCF-201ENST00000264010 SLC10A4Q96EP9 437 aa17.25■□□□□ 0.35
CTCF-201ENST00000264010 LTBP1Q14766 1721 aa17.25■□□□□ 0.35
CTCF-201ENST00000264010 GMNCA6NCL1 334 aa17.25■□□□□ 0.35
CTCF-201ENST00000264010 MUM1Q2TAK8 710 aa17.25■□□□□ 0.35
CTCF-201ENST00000264010 PROSCO94903 275 aa17.24■□□□□ 0.35
CTCF-201ENST00000264010 MARCKSL1P49006 195 aa17.24■□□□□ 0.35
CTCF-201ENST00000264010 SNX16P57768 344 aa17.24■□□□□ 0.35
CTCF-201ENST00000264010 TAP1Q03518 808 aa17.24■□□□□ 0.35
CTCF-201ENST00000264010 ENPEPQ07075 957 aa17.24■□□□□ 0.35
CTCF-201ENST00000264010 C2CD6Q53TS8 623 aa17.24■□□□□ 0.35
CTCF-201ENST00000264010 AADACL2Q6P093 401 aa17.24■□□□□ 0.35
CTCF-201ENST00000264010 FEZF2Q8TBJ5 459 aa17.24■□□□□ 0.35
CTCF-201ENST00000264010 OSBPL8Q9BZF1 889 aa17.24■□□□□ 0.35
CTCF-201ENST00000264010 AFG3L2Q9Y4W6 797 aa17.24■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms