RNA–Protein interactions for RNA: ENST00000263274.11

LIG1-201, Transcript of DNA ligase 1, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene LIG1, Length 3,384 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-201ENST00000263274 CFAP73A6NFT4 308 aa13.4□□□□□ -0.26
LIG1-201ENST00000263274 MUTP22033 750 aa13.4□□□□□ -0.26
LIG1-201ENST00000263274 POLGP54098 1239 aaPredicted RBP13.4□□□□□ -0.26
LIG1-201ENST00000263274 SESN3P58005 492 aa13.4□□□□□ -0.26
LIG1-201ENST00000263274 RPL7AP62424 266 aaKnown RBP13.4□□□□□ -0.26
LIG1-201ENST00000263274 RNASELQ05823 741 aaKnown RBP13.4□□□□□ -0.26
LIG1-201ENST00000263274 FASTKD3Q14CZ7 662 aaKnown RBP13.4□□□□□ -0.26
LIG1-201ENST00000263274 CYP1B1Q16678 543 aa13.4□□□□□ -0.26
LIG1-201ENST00000263274 CKAP2Q8WWK9 683 aa13.4□□□□□ -0.26
LIG1-201ENST00000263274 SMC6Q96SB8 1091 aa13.4□□□□□ -0.26
LIG1-201ENST00000263274 POLR3FQ9H1D9 316 aaPredicted RBP13.4□□□□□ -0.26
LIG1-201ENST00000263274 HAO1Q9UJM8 370 aa13.4□□□□□ -0.26
LIG1-201ENST00000263274 MROH7Q68CQ1 1323 aa13.4□□□□□ -0.26
LIG1-201ENST00000263274 CD19P15391 556 aa13.4□□□□□ -0.26
LIG1-201ENST00000263274 TCF4P15884 667 aa13.4□□□□□ -0.26
LIG1-201ENST00000263274 GPC3P51654 580 aa13.4□□□□□ -0.26
LIG1-201ENST00000263274 PKN2Q16513 984 aaKnown RBP13.4□□□□□ -0.26
LIG1-201ENST00000263274 SMTNL2Q2TAL5 461 aa13.4□□□□□ -0.26
LIG1-201ENST00000263274 CEP120Q8N960 986 aa13.4□□□□□ -0.26
LIG1-201ENST00000263274 IMPG2Q9BZV3 1241 aa13.4□□□□□ -0.26
LIG1-201ENST00000263274 TRABDQ9H4I3 376 aa13.4□□□□□ -0.26
LIG1-201ENST00000263274 ZWILCHQ9H900 591 aa13.4□□□□□ -0.26
LIG1-201ENST00000263274 PCDHA10Q9Y5I2 948 aa13.4□□□□□ -0.26
LIG1-201ENST00000263274 ATP8B3O60423 1300 aa13.4□□□□□ -0.26
LIG1-201ENST00000263274 DSG3P32926 999 aa13.39□□□□□ -0.27
LIG1-201ENST00000263274 MAN1A1P33908 653 aa13.39□□□□□ -0.27
LIG1-201ENST00000263274 MSH2P43246 934 aa13.39□□□□□ -0.27
LIG1-201ENST00000263274 ERFP50548 548 aa13.39□□□□□ -0.27
LIG1-201ENST00000263274 NLRP11P59045 1033 aaKnown RBP13.39□□□□□ -0.27
LIG1-201ENST00000263274 OSTNP61366 133 aa13.39□□□□□ -0.27
LIG1-201ENST00000263274 PDIA2Q13087 525 aaKnown RBP13.39□□□□□ -0.27
LIG1-201ENST00000263274 PGM5Q15124 567 aa13.39□□□□□ -0.27
LIG1-201ENST00000263274 PCNX4Q63HM2 1172 aa13.39□□□□□ -0.27
LIG1-201ENST00000263274 SUPT20HQ8NEM7 779 aa13.39□□□□□ -0.27
LIG1-201ENST00000263274 CNKSR1Q969H4 720 aa13.39□□□□□ -0.27
LIG1-201ENST00000263274 NOP53Q9NZM5 478 aaKnown RBP13.39□□□□□ -0.27
LIG1-201ENST00000263274 SLC12A4Q9UP95 1085 aa13.39□□□□□ -0.27
LIG1-201ENST00000263274 FAM47DPA6NHR8 397 aa13.39□□□□□ -0.27
LIG1-201ENST00000263274 ZBED4O75132 1171 aa13.39□□□□□ -0.27
LIG1-201ENST00000263274 GSTA1P08263 222 aa13.39□□□□□ -0.27
LIG1-201ENST00000263274 PPP1R21Q6ZMI0 780 aa13.39□□□□□ -0.27
LIG1-201ENST00000263274 ERICH1Q86X53 443 aa13.39□□□□□ -0.27
LIG1-201ENST00000263274 C4orf19Q8IY42 314 aa13.39□□□□□ -0.27
LIG1-201ENST00000263274 DEPTORQ8TB45 409 aa13.39□□□□□ -0.27
LIG1-201ENST00000263274 CAMKK2Q96RR4 588 aa13.39□□□□□ -0.27
LIG1-201ENST00000263274 TMEM121Q9BTD3 319 aa13.39□□□□□ -0.27
LIG1-201ENST00000263274 TARS2Q9BW92 718 aaKnown RBP13.39□□□□□ -0.27
LIG1-201ENST00000263274 C12orf65Q9H3J6 166 aaKnown RBP13.39□□□□□ -0.27
LIG1-201ENST00000263274 AGO2Q9UKV8 859 aaKnown RBP13.39□□□□□ -0.27
LIG1-201ENST00000263274 FZD1Q9UP38 647 aa13.39□□□□□ -0.27
LIG1-201ENST00000263274 ATP2A1O14983 1001 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 PROSCO94903 275 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 FOXN2P32314 431 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 CCNHP51946 323 aaPredicted RBP13.38□□□□□ -0.27
LIG1-201ENST00000263274 OVGP1Q12889 678 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 PTK6Q13882 451 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 AP1ARQ63HQ0 302 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 MFSD5Q6N075 450 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 SLC39A4Q6P5W5 647 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 MFSD7Q6UXD7 560 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 MAP4K3Q8IVH8 894 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 DDX1Q92499 740 aaKnown RBP13.38□□□□□ -0.27
LIG1-201ENST00000263274 CFAP57Q96MR6 1250 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 MCEEQ96PE7 176 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 PDCD2LQ9BRP1 358 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 MRIQ9BWK5 157 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 MRPL47Q9HD33 250 aaKnown RBP13.38□□□□□ -0.27
LIG1-201ENST00000263274 ADGRA3Q8IWK6 1321 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 BRWD3Q6RI45 1802 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 K7ERI5 159 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 BPIFB4P59827 614 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 ZBTB16Q05516 673 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 NFX1Q12986 1120 aaKnown RBP13.38□□□□□ -0.27
LIG1-201ENST00000263274 MTMR2Q13614 643 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 PRKG1Q13976 671 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 KCNT1Q5JUK3 1230 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 PRAMEF18Q5VWM3 479 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 MIS18BP1Q6P0N0 1132 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 RBBP8NLQ8NC74 664 aaPredicted RBP13.38□□□□□ -0.27
LIG1-201ENST00000263274 ZNF516Q92618 1163 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 SPDL1Q96EA4 605 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 DDX27Q96GQ7 796 aaKnown RBP13.38□□□□□ -0.27
LIG1-201ENST00000263274 SYNCQ9H7C4 482 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 A1CFQ9NQ94 594 aaKnown RBP13.38□□□□□ -0.27
LIG1-201ENST00000263274 RNF146Q9NTX7 359 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 RBAKQ9NYW8 714 aaPredicted RBP13.38□□□□□ -0.27
LIG1-201ENST00000263274 PECAM1P16284 738 aaPredicted RBP13.38□□□□□ -0.27
LIG1-201ENST00000263274 ALDH3A1P30838 453 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 JAK3P52333 1124 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 KRT76Q01546 638 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 STAT4Q14765 748 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 BBS9Q3SYG4 887 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 CYP4A22Q5TCH4 519 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 GBP7Q8N8V2 638 aaPredicted RBP13.38□□□□□ -0.27
LIG1-201ENST00000263274 LRRC37BQ96QE4 947 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 MSTO1Q9BUK6 570 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 TMEM109Q9BVC6 243 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 PHTF1Q9UMS5 762 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 UBIAD1Q9Y5Z9 338 aa13.38□□□□□ -0.27
LIG1-201ENST00000263274 UMODL1Q5DID0 1318 aa13.37□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.9 ms