RNA–Protein interactions for RNA: ENST00000238112.7

CPSF3-201, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF3, Length 2,345 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-201ENST00000238112 RBAKQ9NYW8 714 aaPredicted RBP19.86■□□□□ 0.77
CPSF3-201ENST00000238112 BAIAP2L1Q9UHR4 511 aa19.86■□□□□ 0.77
CPSF3-201ENST00000238112 ARL2BPQ9Y2Y0 163 aa19.86■□□□□ 0.77
CPSF3-201ENST00000238112 VNN1O95497 513 aa19.86■□□□□ 0.77
CPSF3-201ENST00000238112 CLTAP09496 248 aa19.86■□□□□ 0.77
CPSF3-201ENST00000238112 POLGP54098 1239 aaPredicted RBP19.86■□□□□ 0.77
CPSF3-201ENST00000238112 ACTR2P61160 394 aa19.86■□□□□ 0.77
CPSF3-201ENST00000238112 MPP2Q14168 576 aa19.86■□□□□ 0.77
CPSF3-201ENST00000238112 ZKSCAN8Q15776 578 aaPredicted RBP19.86■□□□□ 0.77
CPSF3-201ENST00000238112 P3H1Q32P28 736 aa19.86■□□□□ 0.77
CPSF3-201ENST00000238112 PLEKHA7Q6IQ23 1121 aa19.86■□□□□ 0.77
CPSF3-201ENST00000238112 PNMA8AQ86V59 439 aaPredicted RBP19.86■□□□□ 0.77
CPSF3-201ENST00000238112 PHF13Q86YI8 300 aaPredicted RBP19.86■□□□□ 0.77
CPSF3-201ENST00000238112 TACO1Q9BSH4 297 aaKnown RBP19.86■□□□□ 0.77
CPSF3-201ENST00000238112 AGAP1Q9UPQ3 857 aa19.86■□□□□ 0.77
CPSF3-201ENST00000238112 PTPRJQ12913 1337 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 CETPP11597 493 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 C1QBPQ07021 282 aaKnown RBP19.85■□□□□ 0.77
CPSF3-201ENST00000238112 TNFAIP1Q13829 316 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 NEDD9Q14511 834 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 EMC2Q15006 297 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 PPP1R21Q6ZMI0 780 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 RBBP8NLQ8NC74 664 aaPredicted RBP19.85■□□□□ 0.77
CPSF3-201ENST00000238112 CCHCR1Q8TD31 782 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 CDHR1Q96JP9 859 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 RBM15Q96T37 977 aaKnown RBP eCLIP19.85■□□□□ 0.77
CPSF3-201ENST00000238112 FOXP3Q9BZS1 431 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 APOBEC3GQ9HC16 384 aaKnown RBP19.85■□□□□ 0.77
CPSF3-201ENST00000238112 NOD2Q9HC29 1040 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 PARVAQ9NVD7 372 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 TELO2Q9Y4R8 837 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 ACTL7BQ9Y614 415 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 TBXAS1P24557 533 aaPredicted RBP19.85■□□□□ 0.77
CPSF3-201ENST00000238112 KLRC2P26717 231 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 XKR3Q5GH77 459 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 SNRNP48Q6IEG0 339 aaKnown RBP19.85■□□□□ 0.77
CPSF3-201ENST00000238112 CYP4F22Q6NT55 531 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 MIS18BP1Q6P0N0 1132 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 ZCCHC9Q8N567 271 aaKnown RBP19.85■□□□□ 0.77
CPSF3-201ENST00000238112 FEZF2Q8TBJ5 459 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 FAM212AQ96EL1 285 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 MAGEB18Q96M61 343 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 ECT2Q9H8V3 914 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 STYXL1Q9Y6J8 313 aa19.85■□□□□ 0.77
CPSF3-201ENST00000238112 NFASCO94856 1347 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 RGS20O76081 388 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 MAGEA4P43358 317 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 IRX3P78415 501 aaPredicted RBP19.84■□□□□ 0.77
CPSF3-201ENST00000238112 CXCL9Q07325 125 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 ADCY1Q08828 1119 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 NFX1Q12986 1120 aaKnown RBP19.84■□□□□ 0.77
CPSF3-201ENST00000238112 KAZNQ674X7 775 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 SLFN12LQ6IEE8 588 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 PRUNE1Q86TP1 453 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 ANKRD35Q8N283 1001 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 GPATCH11Q8N954 259 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 RBM41Q96IZ5 413 aaKnown RBP19.84■□□□□ 0.77
CPSF3-201ENST00000238112 TEPSINQ96N21 525 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 KLHL11Q9NVR0 708 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 GEMIN8Q9NWZ8 242 aaKnown RBP19.84■□□□□ 0.77
CPSF3-201ENST00000238112 IP6K2Q9UHH9 426 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 RASA4BC9J798 803 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 RASA4O43374 803 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 NOP14P78316 857 aaKnown RBP19.84■□□□□ 0.77
CPSF3-201ENST00000238112 E2F5Q15329 346 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 TMED2Q15363 201 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 ABHD15Q6UXT9 468 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 ANKS1BQ7Z6G8 1248 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 RIBC1Q8N443 379 aaPredicted RBP19.84■□□□□ 0.77
CPSF3-201ENST00000238112 GIMAP7Q8NHV1 300 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 DEPTORQ8TB45 409 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 TMEM143Q96AN5 459 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 CFAP57Q96MR6 1250 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 ANKFY1Q9P2R3 1169 aa19.84■□□□□ 0.77
CPSF3-201ENST00000238112 LRRIQ4A6NIV6 560 aa19.83■□□□□ 0.76
CPSF3-201ENST00000238112 GJB6O95452 261 aa19.83■□□□□ 0.76
CPSF3-201ENST00000238112 LDHAP00338 332 aaKnown RBP19.83■□□□□ 0.76
CPSF3-201ENST00000238112 ABHD2P08910 425 aa19.83■□□□□ 0.76
CPSF3-201ENST00000238112 NCALDP61601 193 aa19.83■□□□□ 0.76
CPSF3-201ENST00000238112 GALNTL6Q49A17 601 aa19.83■□□□□ 0.76
CPSF3-201ENST00000238112 CRELD2Q6UXH1 353 aaPredicted RBP19.83■□□□□ 0.76
CPSF3-201ENST00000238112 SEPT14Q6ZU15 432 aa19.83■□□□□ 0.76
CPSF3-201ENST00000238112 RPAINQ86UA6 219 aa19.83■□□□□ 0.76
CPSF3-201ENST00000238112 RCOR2Q8IZ40 523 aa19.83■□□□□ 0.76
CPSF3-201ENST00000238112 MSTO1Q9BUK6 570 aa19.83■□□□□ 0.76
CPSF3-201ENST00000238112 EPB41L3Q9Y2J2 1087 aaPredicted RBP19.83■□□□□ 0.76
CPSF3-201ENST00000238112 PI4K2BG5E9Z4 385 aa19.82■□□□□ 0.76
CPSF3-201ENST00000238112 K7ERI5 159 aa19.82■□□□□ 0.76
CPSF3-201ENST00000238112 LIASO43766 372 aa19.82■□□□□ 0.76
CPSF3-201ENST00000238112 ATF7P17544 494 aaPredicted RBP19.82■□□□□ 0.76
CPSF3-201ENST00000238112 IBSPP21815 317 aaPredicted RBP19.82■□□□□ 0.76
CPSF3-201ENST00000238112 GNPTABQ3T906 1256 aa19.82■□□□□ 0.76
CPSF3-201ENST00000238112 ZBTB45Q96K62 511 aaPredicted RBP19.82■□□□□ 0.76
CPSF3-201ENST00000238112 CGRRF1Q99675 332 aa19.82■□□□□ 0.76
CPSF3-201ENST00000238112 VPS33BQ9H267 617 aa19.82■□□□□ 0.76
CPSF3-201ENST00000238112 SAYSD1Q9NPB0 183 aa19.82■□□□□ 0.76
CPSF3-201ENST00000238112 MCM8Q9UJA3 840 aa19.82■□□□□ 0.76
CPSF3-201ENST00000238112 ZNF148Q9UQR1 794 aa19.82■□□□□ 0.76
CPSF3-201ENST00000238112 ARID2Q68CP9 1835 aa19.82■□□□□ 0.76
CPSF3-201ENST00000238112 EXOC1LA0A1B0GW35 172 aa19.82■□□□□ 0.76
Retrieved 100 of 20,778 RNA–protein pairs in 64.6 ms