RNA–Protein interactions for RNA: ENST00000635273.1

SMARCA2-238, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily a, member 2, human

TSL 5

Gene SMARCA2, Length 672 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCA2-238	ENST00000635273		A0A0G2JS52	829 aa		12.45	□□□□□ -0.42
SMARCA2-238	ENST00000635273	RBM46	Q8TBY0	533 aa	Known RBP	12.45	□□□□□ -0.42
SMARCA2-238	ENST00000635273	C1orf115	Q9H7X2	142 aa		12.45	□□□□□ -0.42
SMARCA2-238	ENST00000635273	POLR3E	Q9NVU0	708 aa		12.45	□□□□□ -0.42
SMARCA2-238	ENST00000635273	MYSM1	Q5VVJ2	828 aa		12.43	□□□□□ -0.42
SMARCA2-238	ENST00000635273		A6NJR5	290 aa		12.42	□□□□□ -0.42
SMARCA2-238	ENST00000635273	MCM6	Q14566	821 aa		12.42	□□□□□ -0.42
SMARCA2-238	ENST00000635273	ATP1B4	Q9UN42	357 aa	Predicted RBP	12.42	□□□□□ -0.42
SMARCA2-238	ENST00000635273	CLUAP1	Q96AJ1	413 aa		12.41	□□□□□ -0.42
SMARCA2-238	ENST00000635273	FAM198A	Q9UFP1	575 aa		12.41	□□□□□ -0.42
SMARCA2-238	ENST00000635273	UBTF	P17480	764 aa	Known RBP	12.4	□□□□□ -0.42
SMARCA2-238	ENST00000635273	COL9A1	P20849	921 aa		12.4	□□□□□ -0.42
SMARCA2-238	ENST00000635273	PTPN5	P54829	565 aa		12.4	□□□□□ -0.42
SMARCA2-238	ENST00000635273		Q6ZNB5	142 aa		12.4	□□□□□ -0.42
SMARCA2-238	ENST00000635273	GNL3	Q9BVP2	549 aa	Known RBP eCLIP	12.4	□□□□□ -0.42
SMARCA2-238	ENST00000635273	ARID3C	A6NKF2	412 aa		12.39	□□□□□ -0.43
SMARCA2-238	ENST00000635273	APBB1	O00213	710 aa		12.39	□□□□□ -0.43
SMARCA2-238	ENST00000635273	PPP4R3B	Q5MIZ7	849 aa		12.39	□□□□□ -0.43
SMARCA2-238	ENST00000635273	KCNH8	Q96L42	1107 aa		12.39	□□□□□ -0.43
SMARCA2-238	ENST00000635273	TBC1D2	Q9BYX2	928 aa		12.39	□□□□□ -0.43
SMARCA2-238	ENST00000635273	RPL17-C18orf32	A0A0A6YYL6	228 aa	Known RBP	12.38	□□□□□ -0.43
SMARCA2-238	ENST00000635273	EYA1	Q99502	592 aa		12.38	□□□□□ -0.43
SMARCA2-238	ENST00000635273	BCL2L12	Q9HB09	334 aa		12.38	□□□□□ -0.43
SMARCA2-238	ENST00000635273	RCCD1	A6NED2	376 aa		12.37	□□□□□ -0.43
SMARCA2-238	ENST00000635273	CLK2	P49760	499 aa	Known RBP	12.37	□□□□□ -0.43
SMARCA2-238	ENST00000635273	DMRTA1	Q5VZB9	504 aa		12.37	□□□□□ -0.43
SMARCA2-238	ENST00000635273	ARID3A	Q99856	593 aa		12.37	□□□□□ -0.43
SMARCA2-238	ENST00000635273	TRAK2	O60296	914 aa		12.36	□□□□□ -0.43
SMARCA2-238	ENST00000635273	DIXDC1	Q155Q3	683 aa		12.36	□□□□□ -0.43
SMARCA2-238	ENST00000635273	TSKS	Q9UJT2	592 aa		12.35	□□□□□ -0.43
SMARCA2-238	ENST00000635273	PSEN2	P49810	448 aa		12.34	□□□□□ -0.43
SMARCA2-238	ENST00000635273	PPP1R3G	B7ZBB8	358 aa		12.33	□□□□□ -0.44
SMARCA2-238	ENST00000635273	C3orf80	F5H4A9	247 aa		12.32	□□□□□ -0.44
SMARCA2-238	ENST00000635273	PTPRE	P23469	700 aa		12.32	□□□□□ -0.44
SMARCA2-238	ENST00000635273	SPIRE2	Q8WWL2	714 aa		12.32	□□□□□ -0.44
SMARCA2-238	ENST00000635273	CD46	P15529	392 aa		12.31	□□□□□ -0.44
SMARCA2-238	ENST00000635273	NUDT18	Q6ZVK8	323 aa		12.31	□□□□□ -0.44
SMARCA2-238	ENST00000635273	LIMD1	Q9UGP4	676 aa		12.31	□□□□□ -0.44
SMARCA2-238	ENST00000635273	DNAJB2	P25686	324 aa		12.29	□□□□□ -0.44
SMARCA2-238	ENST00000635273	RFC5	P40937	340 aa		12.29	□□□□□ -0.44
SMARCA2-238	ENST00000635273	FBXO31	Q5XUX0	539 aa	Predicted RBP	12.29	□□□□□ -0.44
SMARCA2-238	ENST00000635273	RIC3	Q7Z5B4	369 aa		12.29	□□□□□ -0.44
SMARCA2-238	ENST00000635273	SULF1	Q8IWU6	871 aa		12.29	□□□□□ -0.44
SMARCA2-238	ENST00000635273	TATDN2	Q93075	761 aa		12.29	□□□□□ -0.44
SMARCA2-238	ENST00000635273	SPDYE5	A6NIY4	337 aa		12.28	□□□□□ -0.44
SMARCA2-238	ENST00000635273	TRIM6-TRIM34	B2RNG4	842 aa		12.28	□□□□□ -0.44
SMARCA2-238	ENST00000635273	NBPF26	B4DH59	902 aa		12.28	□□□□□ -0.44
SMARCA2-238	ENST00000635273	BANK1	Q8NDB2	785 aa		12.28	□□□□□ -0.44
SMARCA2-238	ENST00000635273	POM121	Q96HA1	1249 aa		12.28	□□□□□ -0.44
SMARCA2-238	ENST00000635273	PACS2	Q86VP3	889 aa		12.27	□□□□□ -0.45
SMARCA2-238	ENST00000635273	PROSER2	Q86WR7	435 aa	Predicted RBP	12.27	□□□□□ -0.45
SMARCA2-238	ENST00000635273	PNMA3	Q9UL41	463 aa		12.27	□□□□□ -0.45
SMARCA2-238	ENST00000635273	DDX11L8	A8MPP1	907 aa		12.26	□□□□□ -0.45
SMARCA2-238	ENST00000635273	PPP2R2D	Q66LE6	453 aa		12.26	□□□□□ -0.45
SMARCA2-238	ENST00000635273	TMEM134	Q9H6X4	195 aa		12.26	□□□□□ -0.45
SMARCA2-238	ENST00000635273	SPTLC1	O15269	473 aa		12.25	□□□□□ -0.45
SMARCA2-238	ENST00000635273	RAD21	O60216	631 aa		12.25	□□□□□ -0.45
SMARCA2-238	ENST00000635273	TUSC1	Q2TAM9	212 aa		12.25	□□□□□ -0.45
SMARCA2-238	ENST00000635273	TMEM259	Q4ZIN3	620 aa		12.25	□□□□□ -0.45
SMARCA2-238	ENST00000635273	NUTM1	Q86Y26	1132 aa		12.25	□□□□□ -0.45
SMARCA2-238	ENST00000635273	FNBP4	Q8N3X1	1017 aa	Predicted RBP	12.25	□□□□□ -0.45
SMARCA2-238	ENST00000635273	SNRK	Q9NRH2	765 aa		12.25	□□□□□ -0.45
SMARCA2-238	ENST00000635273	GOLGA8CP	A6NN73	597 aa		12.23	□□□□□ -0.45
SMARCA2-238	ENST00000635273	RSBN1L	Q6PCB5	846 aa	Predicted RBP	12.23	□□□□□ -0.45
SMARCA2-238	ENST00000635273	THSD4	Q6ZMP0	1018 aa		12.23	□□□□□ -0.45
SMARCA2-238	ENST00000635273	MOXD2P	A6NHM9	499 aa		12.22	□□□□□ -0.45
SMARCA2-238	ENST00000635273	CCDC82	Q8N4S0	544 aa		12.22	□□□□□ -0.45
SMARCA2-238	ENST00000635273	COG6	Q9Y2V7	657 aa		12.22	□□□□□ -0.45
SMARCA2-238	ENST00000635273	LAPTM4A	Q15012	233 aa		12.21	□□□□□ -0.45
SMARCA2-238	ENST00000635273	PROX2	Q3B8N5	592 aa		12.21	□□□□□ -0.45
SMARCA2-238	ENST00000635273	KCNK17	Q96T54	332 aa		12.21	□□□□□ -0.45
SMARCA2-238	ENST00000635273	ZNF777	Q9ULD5	760 aa	Predicted RBP	12.21	□□□□□ -0.45
SMARCA2-238	ENST00000635273	SMAP	O00193	183 aa		12.2	□□□□□ -0.46
SMARCA2-238	ENST00000635273	VPS9D1	Q9Y2B5	631 aa		12.2	□□□□□ -0.46
SMARCA2-238	ENST00000635273	GJA5	P36382	358 aa		12.19	□□□□□ -0.46
SMARCA2-238	ENST00000635273	NDUFV2	P19404	249 aa		12.18	□□□□□ -0.46
SMARCA2-238	ENST00000635273	CSPP1	Q1MSJ5	1256 aa		12.18	□□□□□ -0.46
SMARCA2-238	ENST00000635273	LILRB3	O75022	631 aa		12.17	□□□□□ -0.46
SMARCA2-238	ENST00000635273	PCDHB15	Q9Y5E8	787 aa		12.17	□□□□□ -0.46
SMARCA2-238	ENST00000635273	QPCT	Q16769	361 aa		12.16	□□□□□ -0.46
SMARCA2-238	ENST00000635273	RDH13	Q8NBN7	331 aa		12.16	□□□□□ -0.46
SMARCA2-238	ENST00000635273	MTMR14	Q8NCE2	650 aa		12.15	□□□□□ -0.46
SMARCA2-238	ENST00000635273	WNT2B	Q93097	391 aa		12.15	□□□□□ -0.46
SMARCA2-238	ENST00000635273	KIAA1468	Q9P260	1216 aa		12.15	□□□□□ -0.46
SMARCA2-238	ENST00000635273	KDM4A	O75164	1064 aa		12.14	□□□□□ -0.47
SMARCA2-238	ENST00000635273	ZBED2	Q9BTP6	218 aa		12.14	□□□□□ -0.47
SMARCA2-238	ENST00000635273	RTL5	Q5HYW3	569 aa	Predicted RBP	12.13	□□□□□ -0.47
SMARCA2-238	ENST00000635273	SLC4A5	Q9BY07	1137 aa		12.13	□□□□□ -0.47
SMARCA2-238	ENST00000635273	GCGR	P47871	477 aa		12.12	□□□□□ -0.47
SMARCA2-238	ENST00000635273	USP46	P62068	366 aa		12.11	□□□□□ -0.47
SMARCA2-238	ENST00000635273	RSPH4A	Q5TD94	716 aa		12.11	□□□□□ -0.47
SMARCA2-238	ENST00000635273	GDPD2	Q9HCC8	539 aa		12.11	□□□□□ -0.47
SMARCA2-238	ENST00000635273	NUTM2B	A6NNL0	878 aa	Predicted RBP	12.1	□□□□□ -0.47
SMARCA2-238	ENST00000635273	NUTM2E	B1AL46	878 aa	Predicted RBP	12.1	□□□□□ -0.47
SMARCA2-238	ENST00000635273	SOCS7	O14512	581 aa		12.1	□□□□□ -0.47
SMARCA2-238	ENST00000635273	AP1G2	O75843	785 aa		12.1	□□□□□ -0.47
SMARCA2-238	ENST00000635273	NUTM2D	Q5VT03	806 aa	Predicted RBP	12.1	□□□□□ -0.47
SMARCA2-238	ENST00000635273	PRPF38B	Q5VTL8	546 aa	Known RBP	12.1	□□□□□ -0.47
SMARCA2-238	ENST00000635273	NUTM2A	Q8IVF1	878 aa	Predicted RBP	12.1	□□□□□ -0.47
SMARCA2-238	ENST00000635273	CABLES1	Q8TDN4	633 aa		12.1	□□□□□ -0.47

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