RNA–Protein interactions for RNA: ENST00000625916.1

SCN1A-208, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

TSL 4

Gene SCN1A, Length 560 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-208ENST00000625916 FAM161AQ3B820 660 aa8.69□□□□□ -1.02
SCN1A-208ENST00000625916 TMEM134Q9H6X4 195 aa8.69□□□□□ -1.02
SCN1A-208ENST00000625916 RCCD1A6NED2 376 aa8.68□□□□□ -1.02
SCN1A-208ENST00000625916 ZPR1O75312 459 aa8.68□□□□□ -1.02
SCN1A-208ENST00000625916 V9GY48 417 aaPredicted RBP8.68□□□□□ -1.02
SCN1A-208ENST00000625916 KMT5BQ4FZB7 885 aa8.67□□□□□ -1.02
SCN1A-208ENST00000625916 BLOC1S3Q6QNY0 202 aa8.66□□□□□ -1.02
SCN1A-208ENST00000625916 PLCB2Q00722 1185 aa8.65□□□□□ -1.02
SCN1A-208ENST00000625916 TMUB1Q9BVT8 246 aa8.65□□□□□ -1.02
SCN1A-208ENST00000625916 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP8.64□□□□□ -1.03
SCN1A-208ENST00000625916 CFHP08603 1231 aa8.64□□□□□ -1.03
SCN1A-208ENST00000625916 NRG2O14511 850 aaPredicted RBP8.63□□□□□ -1.03
SCN1A-208ENST00000625916 ACTN4O43707 911 aaKnown RBP8.63□□□□□ -1.03
SCN1A-208ENST00000625916 OATP04181 439 aa8.63□□□□□ -1.03
SCN1A-208ENST00000625916 SMYD5Q6GMV2 418 aa8.63□□□□□ -1.03
SCN1A-208ENST00000625916 HIC1Q14526 733 aa8.62□□□□□ -1.03
SCN1A-208ENST00000625916 RBM26Q5T8P6 1007 aaKnown RBP8.62□□□□□ -1.03
SCN1A-208ENST00000625916 TRAF7Q6Q0C0 670 aa8.62□□□□□ -1.03
SCN1A-208ENST00000625916 TESPA1A2RU30 521 aaPredicted RBP8.61□□□□□ -1.03
SCN1A-208ENST00000625916 TLL1O43897 1013 aa8.61□□□□□ -1.03
SCN1A-208ENST00000625916 PXYLP1Q8TE99 480 aa8.61□□□□□ -1.03
SCN1A-208ENST00000625916 SLC10A3P09131 477 aa8.6□□□□□ -1.03
SCN1A-208ENST00000625916 RSPH4AQ5TD94 716 aa8.6□□□□□ -1.03
SCN1A-208ENST00000625916 PDZRN3Q9UPQ7 1066 aa8.6□□□□□ -1.03
SCN1A-208ENST00000625916 RNF223E7ERA6 249 aa8.59□□□□□ -1.03
SCN1A-208ENST00000625916 NR1I2O75469 434 aa8.58□□□□□ -1.04
SCN1A-208ENST00000625916 GNPATO15228 680 aa8.57□□□□□ -1.04
SCN1A-208ENST00000625916 SLC19A1P41440 591 aa8.57□□□□□ -1.04
SCN1A-208ENST00000625916 METTL3Q86U44 580 aaKnown RBP8.57□□□□□ -1.04
SCN1A-208ENST00000625916 LCE2BO14633 110 aa8.56□□□□□ -1.04
SCN1A-208ENST00000625916 S1PR4O95977 384 aa8.56□□□□□ -1.04
SCN1A-208ENST00000625916 HAP1P54257 671 aaPredicted RBP8.56□□□□□ -1.04
SCN1A-208ENST00000625916 PPEF1O14829 653 aaPredicted RBP8.55□□□□□ -1.04
SCN1A-208ENST00000625916 ADH1BP00325 375 aa8.55□□□□□ -1.04
SCN1A-208ENST00000625916 ANKLE1Q8NAG6 615 aa8.55□□□□□ -1.04
SCN1A-208ENST00000625916 FECHP22830 423 aa8.54□□□□□ -1.04
SCN1A-208ENST00000625916 RDH13Q8NBN7 331 aa8.54□□□□□ -1.04
SCN1A-208ENST00000625916 PUS10Q3MIT2 529 aaKnown RBP8.53□□□□□ -1.04
SCN1A-208ENST00000625916 SCUBE3Q8IX30 993 aa8.53□□□□□ -1.04
SCN1A-208ENST00000625916 SLC6A16Q9GZN6 736 aa8.53□□□□□ -1.04
SCN1A-208ENST00000625916 SPRYD7Q5W111 196 aa8.52□□□□□ -1.05
SCN1A-208ENST00000625916 DAXXQ9UER7 740 aaPredicted RBP8.52□□□□□ -1.05
SCN1A-208ENST00000625916 DDX11L8A8MPP1 907 aa8.51□□□□□ -1.05
SCN1A-208ENST00000625916 GPR37O15354 613 aa8.51□□□□□ -1.05
SCN1A-208ENST00000625916 EMID1Q96A84 441 aaPredicted RBP8.51□□□□□ -1.05
SCN1A-208ENST00000625916 ZNF598Q86UK7 904 aaKnown RBP8.5□□□□□ -1.05
SCN1A-208ENST00000625916 GPIHBP1Q8IV16 184 aa8.5□□□□□ -1.05
SCN1A-208ENST00000625916 NLRP7Q8WX94 980 aa8.5□□□□□ -1.05
SCN1A-208ENST00000625916 LIAT1Q6ZQX7 453 aa8.49□□□□□ -1.05
SCN1A-208ENST00000625916 SPSB2Q99619 263 aa8.49□□□□□ -1.05
SCN1A-208ENST00000625916 ZNF697Q5TEC3 545 aa8.48□□□□□ -1.05
SCN1A-208ENST00000625916 TRIM67Q6ZTA4 783 aa8.48□□□□□ -1.05
SCN1A-208ENST00000625916 PKDCCQ504Y2 493 aa8.47□□□□□ -1.05
SCN1A-208ENST00000625916 SULF1Q8IWU6 871 aa8.47□□□□□ -1.05
SCN1A-208ENST00000625916 FUT2Q10981 343 aa8.46□□□□□ -1.06
SCN1A-208ENST00000625916 ZNF787Q6DD87 383 aa8.46□□□□□ -1.06
SCN1A-208ENST00000625916 ATP6V1AP38606 617 aa8.45□□□□□ -1.06
SCN1A-208ENST00000625916 PLA2G2CQ5R387 149 aa8.45□□□□□ -1.06
SCN1A-208ENST00000625916 MORN1Q5T089 497 aa8.45□□□□□ -1.06
SCN1A-208ENST00000625916 TNFRSF10AO00220 468 aa8.44□□□□□ -1.06
SCN1A-208ENST00000625916 GCGRP47871 477 aa8.44□□□□□ -1.06
SCN1A-208ENST00000625916 PRR20EP86478 221 aa8.44□□□□□ -1.06
SCN1A-208ENST00000625916 PRR20CP86479 221 aa8.44□□□□□ -1.06
SCN1A-208ENST00000625916 PRR20DP86480 221 aa8.44□□□□□ -1.06
SCN1A-208ENST00000625916 PRR20BP86481 221 aa8.44□□□□□ -1.06
SCN1A-208ENST00000625916 PRR20AP86496 221 aa8.44□□□□□ -1.06
SCN1A-208ENST00000625916 PHOX2BQ99453 314 aa8.44□□□□□ -1.06
SCN1A-208ENST00000625916 KDM2AQ9Y2K7 1162 aa8.44□□□□□ -1.06
SCN1A-208ENST00000625916 TULP1O00294 542 aaPredicted RBP8.43□□□□□ -1.06
SCN1A-208ENST00000625916 DGAT1O75907 488 aa8.43□□□□□ -1.06
SCN1A-208ENST00000625916 FMNL1O95466 1100 aaPredicted RBP8.43□□□□□ -1.06
SCN1A-208ENST00000625916 FAM187AA6NFU0 413 aa8.42□□□□□ -1.06
SCN1A-208ENST00000625916 SLC27A5Q9Y2P5 690 aa8.42□□□□□ -1.06
SCN1A-208ENST00000625916 GDF9O60383 454 aa8.41□□□□□ -1.06
SCN1A-208ENST00000625916 MYT1Q01538 1121 aa8.4□□□□□ -1.06
SCN1A-208ENST00000625916 FOXC1Q12948 553 aa8.4□□□□□ -1.06
SCN1A-208ENST00000625916 GRIPAP1Q4V328 841 aa8.4□□□□□ -1.06
SCN1A-208ENST00000625916 THAP11Q96EK4 314 aa8.4□□□□□ -1.06
SCN1A-208ENST00000625916 FCF1Q9Y324 198 aaKnown RBP8.4□□□□□ -1.06
SCN1A-208ENST00000625916 RPIAP49247 311 aa8.38□□□□□ -1.07
SCN1A-208ENST00000625916 MAP2K5Q13163 448 aa8.38□□□□□ -1.07
SCN1A-208ENST00000625916 FAM160A2Q8N612 972 aaPredicted RBP8.38□□□□□ -1.07
SCN1A-208ENST00000625916 SALL2Q9Y467 1007 aaPredicted RBP8.38□□□□□ -1.07
SCN1A-208ENST00000625916 CD2BP2O95400 341 aaKnown RBP8.37□□□□□ -1.07
SCN1A-208ENST00000625916 BRICD5Q6PL45 260 aa8.37□□□□□ -1.07
SCN1A-208ENST00000625916 PRDM9Q9NQV7 894 aa8.37□□□□□ -1.07
SCN1A-208ENST00000625916 LMOD2Q6P5Q4 547 aa8.36□□□□□ -1.07
SCN1A-208ENST00000625916 RNF19BQ6ZMZ0 732 aa8.36□□□□□ -1.07
SCN1A-208ENST00000625916 ZBTB24O43167 697 aaPredicted RBP8.35□□□□□ -1.07
SCN1A-208ENST00000625916 Q3C1V9 767 aa8.35□□□□□ -1.07
SCN1A-208ENST00000625916 VSIG10Q8N0Z9 540 aa8.35□□□□□ -1.07
SCN1A-208ENST00000625916 PKD2L1Q9P0L9 805 aa8.35□□□□□ -1.07
SCN1A-208ENST00000625916 IRF6O14896 467 aa8.34□□□□□ -1.07
SCN1A-208ENST00000625916 CD46P15529 392 aa8.34□□□□□ -1.07
SCN1A-208ENST00000625916 MDM2Q00987 491 aaPredicted RBP8.34□□□□□ -1.07
SCN1A-208ENST00000625916 MSS51Q4VC12 460 aa8.34□□□□□ -1.07
SCN1A-208ENST00000625916 MINK1Q8N4C8 1332 aaPredicted RBP8.32□□□□□ -1.08
SCN1A-208ENST00000625916 KDM4AO75164 1064 aa8.32□□□□□ -1.08
SCN1A-208ENST00000625916 CYP4X1Q8N118 509 aa8.32□□□□□ -1.08
SCN1A-208ENST00000625916 ZNF775Q96BV0 537 aaPredicted RBP8.32□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 11.4 ms