RNA–Protein interactions for RNA: ENST00000621676.4

VPS11-208, Transcript of VPS11, CORVET/HOPS core subunit, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS11, Length 3,313 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS11-208ENST00000621676 KIDINS220Q9ULH0 1771 aa14.19□□□□□ -0.14
VPS11-208ENST00000621676 CDCA7LQ96GN5 454 aa14.19□□□□□ -0.14
VPS11-208ENST00000621676 CCER2I3L3R5 266 aa14.18□□□□□ -0.14
VPS11-208ENST00000621676 PELP1Q8IZL8 1130 aaKnown RBP14.18□□□□□ -0.14
VPS11-208ENST00000621676 CARD14Q9BXL6 1004 aa14.18□□□□□ -0.14
VPS11-208ENST00000621676 CABP1Q9NZU7 370 aa14.18□□□□□ -0.14
VPS11-208ENST00000621676 LTKP29376 864 aa14.18□□□□□ -0.14
VPS11-208ENST00000621676 HSPA2P54652 639 aa14.17□□□□□ -0.14
VPS11-208ENST00000621676 ZRANB1Q9UGI0 708 aa14.17□□□□□ -0.14
VPS11-208ENST00000621676 U2SURPO15042 1029 aaKnown RBP14.17□□□□□ -0.14
VPS11-208ENST00000621676 MAST1Q9Y2H9 1570 aa14.16□□□□□ -0.14
VPS11-208ENST00000621676 MORC1Q86VD1 984 aa14.16□□□□□ -0.14
VPS11-208ENST00000621676 DNAJC5Q9H3Z4 198 aa14.16□□□□□ -0.14
VPS11-208ENST00000621676 SLC52A1Q9NWF4 448 aa14.16□□□□□ -0.14
VPS11-208ENST00000621676 C14orf93Q9H972 538 aaKnown RBP14.16□□□□□ -0.14
VPS11-208ENST00000621676 XPCQ01831 940 aaPredicted RBP14.15□□□□□ -0.14
VPS11-208ENST00000621676 ADAMTS8Q9UP79 889 aa14.15□□□□□ -0.14
VPS11-208ENST00000621676 WDR43Q15061 677 aaKnown RBP eCLIP14.15□□□□□ -0.14
VPS11-208ENST00000621676 PER1O15534 1290 aaPredicted RBP14.14□□□□□ -0.15
VPS11-208ENST00000621676 BCORL1Q5H9F3 1711 aa14.14□□□□□ -0.15
VPS11-208ENST00000621676 CDK19Q9BWU1 502 aa14.13□□□□□ -0.15
VPS11-208ENST00000621676 KTN1Q86UP2 1357 aaKnown RBP14.13□□□□□ -0.15
VPS11-208ENST00000621676 MLH3Q9UHC1 1453 aa14.13□□□□□ -0.15
VPS11-208ENST00000621676 E9PCH4 1651 aa14.13□□□□□ -0.15
VPS11-208ENST00000621676 PLIN1O60240 522 aa14.13□□□□□ -0.15
VPS11-208ENST00000621676 NEO1Q92859 1461 aa14.12□□□□□ -0.15
VPS11-208ENST00000621676 PAK3O75914 559 aaPredicted RBP14.12□□□□□ -0.15
VPS11-208ENST00000621676 ABCA6Q8N139 1617 aa14.12□□□□□ -0.15
VPS11-208ENST00000621676 RALGAPBQ86X10 1494 aa14.12□□□□□ -0.15
VPS11-208ENST00000621676 PLEKHH1Q9ULM0 1364 aa14.12□□□□□ -0.15
VPS11-208ENST00000621676 CLTCL1P53675 1640 aa14.11□□□□□ -0.15
VPS11-208ENST00000621676 PNISRQ8TF01 805 aaKnown RBP14.11□□□□□ -0.15
VPS11-208ENST00000621676 CEP152O94986 1710 aa14.11□□□□□ -0.15
VPS11-208ENST00000621676 FRMPD1Q5SYB0 1578 aa14.11□□□□□ -0.15
VPS11-208ENST00000621676 SLC24A1O60721 1099 aa14.1□□□□□ -0.15
VPS11-208ENST00000621676 UHRF1BP1Q6BDS2 1440 aa14.1□□□□□ -0.15
VPS11-208ENST00000621676 KDM5DQ9BY66 1539 aa14.1□□□□□ -0.15
VPS11-208ENST00000621676 HECW2Q9P2P5 1572 aa14.1□□□□□ -0.15
VPS11-208ENST00000621676 B4GALNT3Q6L9W6 998 aa14.1□□□□□ -0.15
VPS11-208ENST00000621676 DIP2BQ9P265 1576 aa14.09□□□□□ -0.15
VPS11-208ENST00000621676 PPP2R1AP30153 589 aa14.09□□□□□ -0.15
VPS11-208ENST00000621676 PLXNC1O60486 1568 aa14.09□□□□□ -0.15
VPS11-208ENST00000621676 APAF1O14727 1248 aa14.08□□□□□ -0.16
VPS11-208ENST00000621676 MTHFSP49914 203 aa14.08□□□□□ -0.16
VPS11-208ENST00000621676 MYBBP1AQ9BQG0 1328 aaKnown RBP14.08□□□□□ -0.16
VPS11-208ENST00000621676 EID1Q9Y6B2 187 aa14.08□□□□□ -0.16
VPS11-208ENST00000621676 CDCA8Q53HL2 280 aa14.08□□□□□ -0.16
VPS11-208ENST00000621676 NLRP13Q86W25 1043 aa14.08□□□□□ -0.16
VPS11-208ENST00000621676 INO80Q9ULG1 1556 aaPredicted RBP14.07□□□□□ -0.16
VPS11-208ENST00000621676 PTPRTO14522 1441 aa14.06□□□□□ -0.16
VPS11-208ENST00000621676 U2AF1L5P0DN76 240 aaPredicted RBP14.06□□□□□ -0.16
VPS11-208ENST00000621676 U2AF1Q01081 240 aaKnown RBP eCLIP14.06□□□□□ -0.16
VPS11-208ENST00000621676 RRS1Q15050 365 aaKnown RBP14.06□□□□□ -0.16
VPS11-208ENST00000621676 EVC2Q86UK5 1308 aa14.06□□□□□ -0.16
VPS11-208ENST00000621676 ABCC3O15438 1527 aa14.06□□□□□ -0.16
VPS11-208ENST00000621676 PPRC1Q5VV67 1664 aaKnown RBP14.06□□□□□ -0.16
VPS11-208ENST00000621676 DIP2CQ9Y2E4 1556 aa14.06□□□□□ -0.16
VPS11-208ENST00000621676 LTV1Q96GA3 475 aaPredicted RBP14.05□□□□□ -0.16
VPS11-208ENST00000621676 IQGAP3Q86VI3 1631 aa14.05□□□□□ -0.16
VPS11-208ENST00000621676 AMER1Q5JTC6 1135 aaPredicted RBP14.05□□□□□ -0.16
VPS11-208ENST00000621676 LAS1LQ9Y4W2 734 aaKnown RBP14.05□□□□□ -0.16
VPS11-208ENST00000621676 METP08581 1390 aa14.05□□□□□ -0.16
VPS11-208ENST00000621676 HMOX1P09601 288 aa14.05□□□□□ -0.16
VPS11-208ENST00000621676 AMOTL2Q9Y2J4 779 aa14.05□□□□□ -0.16
VPS11-208ENST00000621676 UNC13BO14795 1591 aa14.04□□□□□ -0.16
VPS11-208ENST00000621676 BCL2L13Q9BXK5 485 aa14.04□□□□□ -0.16
VPS11-208ENST00000621676 RALBP1Q15311 655 aa14.03□□□□□ -0.16
VPS11-208ENST00000621676 NME9Q86XW9 330 aa14.03□□□□□ -0.16
VPS11-208ENST00000621676 EIF3AQ14152 1382 aaKnown RBP14.03□□□□□ -0.16
VPS11-208ENST00000621676 SCAF11Q99590 1463 aaKnown RBP14.02□□□□□ -0.16
VPS11-208ENST00000621676 TNRQ92752 1358 aa14.02□□□□□ -0.16
VPS11-208ENST00000621676 KDM5CP41229 1560 aa14.02□□□□□ -0.17
VPS11-208ENST00000621676 MAGI2Q86UL8 1455 aa14.01□□□□□ -0.17
VPS11-208ENST00000621676 TCERG1O14776 1098 aaKnown RBP14.01□□□□□ -0.17
VPS11-208ENST00000621676 NGDNQ8NEJ9 315 aaKnown RBP14.01□□□□□ -0.17
VPS11-208ENST00000621676 DDX17Q92841 729 aaKnown RBP14.01□□□□□ -0.17
VPS11-208ENST00000621676 MROH1Q8NDA8 1641 aa14.01□□□□□ -0.17
VPS11-208ENST00000621676 ARAP3Q8WWN8 1544 aa14.01□□□□□ -0.17
VPS11-208ENST00000621676 NSD3Q9BZ95 1437 aa14.01□□□□□ -0.17
VPS11-208ENST00000621676 KCNA6P17658 529 aa14.01□□□□□ -0.17
VPS11-208ENST00000621676 SKAP1Q86WV1 359 aa14.01□□□□□ -0.17
VPS11-208ENST00000621676 EFCAB6Q5THR3 1501 aa14□□□□□ -0.17
VPS11-208ENST00000621676 RIMS2Q9UQ26 1411 aa14□□□□□ -0.17
VPS11-208ENST00000621676 TRPM2O94759 1503 aa14□□□□□ -0.17
VPS11-208ENST00000621676 ELL2O00472 640 aaPredicted RBP13.99□□□□□ -0.17
VPS11-208ENST00000621676 RNF17Q9BXT8 1623 aaKnown RBP13.99□□□□□ -0.17
VPS11-208ENST00000621676 NUDT16Q96DE0 195 aaKnown RBP13.98□□□□□ -0.17
VPS11-208ENST00000621676 EMILIN1Q9Y6C2 1016 aa13.98□□□□□ -0.17
VPS11-208ENST00000621676 DMRT2Q9Y5R5 561 aa13.98□□□□□ -0.17
VPS11-208ENST00000621676 HDGFL2Q7Z4V5 671 aaPredicted RBP13.97□□□□□ -0.17
VPS11-208ENST00000621676 THEMISQ8N1K5 641 aaPredicted RBP13.97□□□□□ -0.17
VPS11-208ENST00000621676 GPRASP1Q5JY77 1395 aa13.96□□□□□ -0.17
VPS11-208ENST00000621676 RPGRIP1LQ68CZ1 1315 aa13.96□□□□□ -0.17
VPS11-208ENST00000621676 HDGFP51858 240 aaKnown RBP13.96□□□□□ -0.17
VPS11-208ENST00000621676 THUMPD2Q9BTF0 503 aaKnown RBP13.96□□□□□ -0.17
VPS11-208ENST00000621676 SPINK5Q9NQ38 1064 aaPredicted RBP13.96□□□□□ -0.18
VPS11-208ENST00000621676 FRAT1Q92837 279 aaPredicted RBP13.95□□□□□ -0.18
VPS11-208ENST00000621676 MAP3K4Q9Y6R4 1608 aa13.95□□□□□ -0.18
VPS11-208ENST00000621676 FYB1O15117 783 aa13.95□□□□□ -0.18
VPS11-208ENST00000621676 SPHKAPQ2M3C7 1700 aa13.95□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms