RNA–Protein interactions for RNA: ENST00000613744.4

POLR2J3-220, Transcript of RNA polymerase II subunit J3, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene POLR2J3, Length 2,096 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
POLR2J3-220ENST00000613744 CLTCL1P53675 1640 aa29.87■■■□□ 2.37
POLR2J3-220ENST00000613744 CHGAP10645 457 aaKnown RBP29.87■■■□□ 2.37
POLR2J3-220ENST00000613744 RGL3Q3MIN7 710 aa29.83■■■□□ 2.37
POLR2J3-220ENST00000613744 SLC52A1Q9NWF4 448 aa29.8■■■□□ 2.36
POLR2J3-220ENST00000613744 NOP58Q9Y2X3 529 aaKnown RBP29.8■■■□□ 2.36
POLR2J3-220ENST00000613744 HIRIP3Q9BW71 556 aaPredicted RBP29.8■■■□□ 2.36
POLR2J3-220ENST00000613744 PIK3C2BO00750 1634 aa29.77■■■□□ 2.36
POLR2J3-220ENST00000613744 STAG3Q9UJ98 1225 aa29.77■■■□□ 2.36
POLR2J3-220ENST00000613744 IRX6P78412 446 aaPredicted RBP29.73■■■□□ 2.35
POLR2J3-220ENST00000613744 ZNF326Q5BKZ1 582 aaKnown RBP29.72■■■□□ 2.35
POLR2J3-220ENST00000613744 KIF1BO60333 1816 aa29.71■■■□□ 2.35
POLR2J3-220ENST00000613744 MYO3AQ8NEV4 1616 aa29.7■■■□□ 2.35
POLR2J3-220ENST00000613744 L3MBTL2Q969R5 705 aa29.69■■■□□ 2.34
POLR2J3-220ENST00000613744 SPATA31E1Q6ZUB1 1445 aa29.69■■■□□ 2.34
POLR2J3-220ENST00000613744 MYO5BQ9ULV0 1848 aa29.68■■■□□ 2.34
POLR2J3-220ENST00000613744 NLRP1Q9C000 1473 aa29.67■■■□□ 2.34
POLR2J3-220ENST00000613744 NUTM2DQ5VT03 806 aaPredicted RBP29.67■■■□□ 2.34
POLR2J3-220ENST00000613744 SETD1BQ9UPS6 1966 aaKnown RBP29.67■■■□□ 2.34
POLR2J3-220ENST00000613744 KDM2AQ9Y2K7 1162 aa29.67■■■□□ 2.34
POLR2J3-220ENST00000613744 TMEM131LA2VDJ0 1609 aa29.66■■■□□ 2.34
POLR2J3-220ENST00000613744 ADGRB3O60242 1522 aa29.65■■■□□ 2.34
POLR2J3-220ENST00000613744 ZBED9Q6R2W3 1325 aa29.65■■■□□ 2.34
POLR2J3-220ENST00000613744 DCAF11Q8TEB1 546 aa29.64■■■□□ 2.34
POLR2J3-220ENST00000613744 SENP3Q9H4L4 574 aaPredicted RBP29.64■■■□□ 2.34
POLR2J3-220ENST00000613744 UHRF1BP1Q6BDS2 1440 aa29.63■■■□□ 2.33
POLR2J3-220ENST00000613744 A2ML1A8K2U0 1454 aa29.63■■■□□ 2.33
POLR2J3-220ENST00000613744 CEP170BQ9Y4F5 1589 aaPredicted RBP29.62■■■□□ 2.33
POLR2J3-220ENST00000613744 UBR1Q8IWV7 1749 aa29.61■■■□□ 2.33
POLR2J3-220ENST00000613744 THEMISQ8N1K5 641 aaPredicted RBP29.55■■■□□ 2.32
POLR2J3-220ENST00000613744 WASHC2AQ641Q2 1341 aa29.55■■■□□ 2.32
POLR2J3-220ENST00000613744 B4GALNT3Q6L9W6 998 aa29.54■■■□□ 2.32
POLR2J3-220ENST00000613744 ZNF142P52746 1687 aaPredicted RBP29.53■■■□□ 2.32
POLR2J3-220ENST00000613744 HSPA2P54652 639 aa29.52■■■□□ 2.32
POLR2J3-220ENST00000613744 TMEM2Q9UHN6 1383 aa29.51■■■□□ 2.31
POLR2J3-220ENST00000613744 NEURL4Q96JN8 1562 aa29.51■■■□□ 2.31
POLR2J3-220ENST00000613744 RIMS2Q9UQ26 1411 aa29.51■■■□□ 2.31
POLR2J3-220ENST00000613744 IPO9Q96P70 1041 aaKnown RBP29.51■■■□□ 2.31
POLR2J3-220ENST00000613744 ANP32AP39687 249 aaKnown RBP29.5■■■□□ 2.31
POLR2J3-220ENST00000613744 RTL5Q5HYW3 569 aaPredicted RBP29.5■■■□□ 2.31
POLR2J3-220ENST00000613744 ADGRF5Q8IZF2 1346 aa29.5■■■□□ 2.31
POLR2J3-220ENST00000613744 NEXMIFQ5QGS0 1516 aa29.5■■■□□ 2.31
POLR2J3-220ENST00000613744 KDM5AP29375 1690 aaKnown RBP29.49■■■□□ 2.31
POLR2J3-220ENST00000613744 PAK3O75914 559 aaPredicted RBP29.48■■■□□ 2.31
POLR2J3-220ENST00000613744 RPGRIP1LQ68CZ1 1315 aa29.48■■■□□ 2.31
POLR2J3-220ENST00000613744 LTKP29376 864 aa29.48■■■□□ 2.31
POLR2J3-220ENST00000613744 PPLO60437 1756 aa29.47■■■□□ 2.31
POLR2J3-220ENST00000613744 TXNDC2Q86VQ3 553 aa29.47■■■□□ 2.31
POLR2J3-220ENST00000613744 HSPA5P11021 654 aaKnown RBP29.46■■■□□ 2.31
POLR2J3-220ENST00000613744 NBR1Q14596 966 aa29.46■■■□□ 2.31
POLR2J3-220ENST00000613744 NBPF8Q3BBV2 869 aa29.46■■■□□ 2.31
POLR2J3-220ENST00000613744 LMTK3Q96Q04 1460 aa29.46■■■□□ 2.31
POLR2J3-220ENST00000613744 IFT172Q9UG01 1749 aa29.46■■■□□ 2.31
POLR2J3-220ENST00000613744 ZFYVE9O95405 1425 aa29.45■■■□□ 2.31
POLR2J3-220ENST00000613744 SMG6Q86US8 1419 aaKnown RBP29.45■■■□□ 2.3
POLR2J3-220ENST00000613744 VGFO15240 615 aaPredicted RBP29.43■■■□□ 2.3
POLR2J3-220ENST00000613744 PRKRIP1Q9H875 184 aaPredicted RBP29.43■■■□□ 2.3
POLR2J3-220ENST00000613744 EIF4G2P78344 907 aaKnown RBP eCLIP29.43■■■□□ 2.3
POLR2J3-220ENST00000613744 EID1Q9Y6B2 187 aa29.42■■■□□ 2.3
POLR2J3-220ENST00000613744 AEBP2Q6ZN18 517 aaPredicted RBP29.41■■■□□ 2.3
POLR2J3-220ENST00000613744 SLIT1O75093 1534 aa29.41■■■□□ 2.3
POLR2J3-220ENST00000613744 RNF123Q5XPI4 1314 aa29.4■■■□□ 2.3
POLR2J3-220ENST00000613744 ARHGAP23Q9P227 1491 aa29.4■■■□□ 2.3
POLR2J3-220ENST00000613744 ABCF1Q8NE71 845 aaKnown RBP eCLIP29.4■■■□□ 2.3
POLR2J3-220ENST00000613744 HDGFP51858 240 aaKnown RBP29.39■■■□□ 2.3
POLR2J3-220ENST00000613744 ZBTB47Q9UFB7 747 aaPredicted RBP29.39■■■□□ 2.3
POLR2J3-220ENST00000613744 NCKAP5LQ9HCH0 1330 aa29.39■■■□□ 2.29
POLR2J3-220ENST00000613744 POLR1AO95602 1720 aaPredicted RBP29.38■■■□□ 2.29
POLR2J3-220ENST00000613744 ANKLE2Q86XL3 938 aa29.38■■■□□ 2.29
POLR2J3-220ENST00000613744 PRAG1Q86YV5 1406 aa29.37■■■□□ 2.29
POLR2J3-220ENST00000613744 MYOM2P54296 1465 aa29.37■■■□□ 2.29
POLR2J3-220ENST00000613744 CCDC7Q96M83 1385 aa29.35■■■□□ 2.29
POLR2J3-220ENST00000613744 MRS2Q9HD23 443 aa29.35■■■□□ 2.29
POLR2J3-220ENST00000613744 SCAF11Q99590 1463 aaKnown RBP29.35■■■□□ 2.29
POLR2J3-220ENST00000613744 CFAP70Q5T0N1 1121 aa29.34■■■□□ 2.29
POLR2J3-220ENST00000613744 CCDC184Q52MB2 194 aa29.33■■■□□ 2.29
POLR2J3-220ENST00000613744 STAC3Q96MF2 364 aa29.33■■■□□ 2.29
POLR2J3-220ENST00000613744 ANO8Q9HCE9 1232 aaPredicted RBP29.32■■■□□ 2.28
POLR2J3-220ENST00000613744 PIK3C2GO75747 1445 aa29.31■■■□□ 2.28
POLR2J3-220ENST00000613744 NBPF1Q3BBV0 1214 aa29.31■■■□□ 2.28
POLR2J3-220ENST00000613744 USP35Q9P2H5 1018 aa29.31■■■□□ 2.28
POLR2J3-220ENST00000613744 NRXN1Q9ULB1 1477 aa29.31■■■□□ 2.28
POLR2J3-220ENST00000613744 SLC26A8Q96RN1 970 aa29.3■■■□□ 2.28
POLR2J3-220ENST00000613744 FAM9BQ8IZU0 186 aa29.29■■■□□ 2.28
POLR2J3-220ENST00000613744 PLEKHG1Q9ULL1 1385 aa29.27■■■□□ 2.28
POLR2J3-220ENST00000613744 TMEM132EQ6IEE7 984 aa29.26■■■□□ 2.27
POLR2J3-220ENST00000613744 CCDC136Q96JN2 1154 aa29.25■■■□□ 2.27
POLR2J3-220ENST00000613744 C14orf93Q9H972 538 aaKnown RBP29.25■■■□□ 2.27
POLR2J3-220ENST00000613744 NUDCQ9Y266 331 aa29.25■■■□□ 2.27
POLR2J3-220ENST00000613744 IQGAP1P46940 1657 aa29.25■■■□□ 2.27
POLR2J3-220ENST00000613744 NRXN3Q9Y4C0 1643 aa29.24■■■□□ 2.27
POLR2J3-220ENST00000613744 TRPM1Q7Z4N2 1603 aa29.23■■■□□ 2.27
POLR2J3-220ENST00000613744 ROCK2O75116 1388 aaKnown RBP29.22■■■□□ 2.27
POLR2J3-220ENST00000613744 ALKQ9UM73 1620 aa29.22■■■□□ 2.27
POLR2J3-220ENST00000613744 NPHP4O75161 1426 aaPredicted RBP29.21■■■□□ 2.27
POLR2J3-220ENST00000613744 ADAMTS13Q76LX8 1427 aa29.2■■■□□ 2.26
POLR2J3-220ENST00000613744 STRCQ7RTU9 1775 aa29.2■■■□□ 2.26
POLR2J3-220ENST00000613744 SETBP1Q9Y6X0 1596 aa29.19■■■□□ 2.26
POLR2J3-220ENST00000613744 C11orf95C9JLR9 678 aaPredicted RBP29.19■■■□□ 2.26
POLR2J3-220ENST00000613744 RALGAPBQ86X10 1494 aa29.19■■■□□ 2.26
POLR2J3-220ENST00000613744 CARD11Q9BXL7 1154 aa29.18■■■□□ 2.26
Retrieved 100 of 20,778 RNA–protein pairs in 10.4 ms