RNA–Protein interactions for RNA: ENST00000611725.4

SNX13-213, Transcript of sorting nexin 13, humanhuman

TSL 1 (best) BASIC

Gene SNX13, Length 6,817 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNX13-213ENST00000611725 MTHFSP49914 203 aa8.17□□□□□ -1.1
SNX13-213ENST00000611725 GPRASP1Q5JY77 1395 aa8.17□□□□□ -1.1
SNX13-213ENST00000611725 ARHGEF12Q9NZN5 1544 aa8.17□□□□□ -1.1
SNX13-213ENST00000611725 AMER1Q5JTC6 1135 aaPredicted RBP8.17□□□□□ -1.1
SNX13-213ENST00000611725 SLC52A1Q9NWF4 448 aa8.17□□□□□ -1.1
SNX13-213ENST00000611725 RWDD1Q9H446 243 aaPredicted RBP8.17□□□□□ -1.1
SNX13-213ENST00000611725 ABCC10Q5T3U5 1492 aa8.17□□□□□ -1.1
SNX13-213ENST00000611725 CTTNBP2Q8WZ74 1663 aa8.17□□□□□ -1.1
SNX13-213ENST00000611725 EIF4G3O43432 1585 aaKnown RBP8.16□□□□□ -1.1
SNX13-213ENST00000611725 RUNDC1Q96C34 613 aa8.16□□□□□ -1.1
SNX13-213ENST00000611725 GGNBP2Q9H3C7 697 aa8.16□□□□□ -1.1
SNX13-213ENST00000611725 RPGRIP1LQ68CZ1 1315 aa8.16□□□□□ -1.1
SNX13-213ENST00000611725 IPO8O15397 1037 aaKnown RBP8.16□□□□□ -1.1
SNX13-213ENST00000611725 HSP90AA1P07900 732 aaKnown RBP8.16□□□□□ -1.1
SNX13-213ENST00000611725 SMC4Q9NTJ3 1288 aa8.16□□□□□ -1.1
SNX13-213ENST00000611725 DNMT1P26358 1616 aaKnown RBP8.15□□□□□ -1.1
SNX13-213ENST00000611725 CHMP4BQ9H444 224 aaKnown RBP8.15□□□□□ -1.1
SNX13-213ENST00000611725 CABP2Q9NPB3 220 aa8.15□□□□□ -1.1
SNX13-213ENST00000611725 ADGRL1O94910 1474 aa8.15□□□□□ -1.11
SNX13-213ENST00000611725 DEKP35659 375 aaKnown RBP8.15□□□□□ -1.11
SNX13-213ENST00000611725 FAM161AQ3B820 660 aa8.15□□□□□ -1.11
SNX13-213ENST00000611725 LRPPRCP42704 1394 aaKnown RBP8.15□□□□□ -1.11
SNX13-213ENST00000611725 FAM135AQ9P2D6 1515 aa8.15□□□□□ -1.11
SNX13-213ENST00000611725 FAM69CQ0P6D2 419 aa8.14□□□□□ -1.11
SNX13-213ENST00000611725 SUGP2Q8IX01 1082 aaKnown RBP eCLIP8.14□□□□□ -1.11
SNX13-213ENST00000611725 SYCP2Q9BX26 1530 aa8.14□□□□□ -1.11
SNX13-213ENST00000611725 PMFBP1Q8TBY8 1022 aa8.14□□□□□ -1.11
SNX13-213ENST00000611725 SCAF11Q99590 1463 aaKnown RBP8.14□□□□□ -1.11
SNX13-213ENST00000611725 HAP1P54257 671 aaPredicted RBP8.13□□□□□ -1.11
SNX13-213ENST00000611725 ZKSCAN2Q63HK3 967 aa8.13□□□□□ -1.11
SNX13-213ENST00000611725 SLFN5Q08AF3 891 aa8.13□□□□□ -1.11
SNX13-213ENST00000611725 ITPRIPQ8IWB1 547 aa8.13□□□□□ -1.11
SNX13-213ENST00000611725 BACH2Q9BYV9 841 aa8.13□□□□□ -1.11
SNX13-213ENST00000611725 FANCAO15360 1455 aa8.13□□□□□ -1.11
SNX13-213ENST00000611725 PDE3AQ14432 1141 aa8.13□□□□□ -1.11
SNX13-213ENST00000611725 BCAR3O75815 825 aa8.12□□□□□ -1.11
SNX13-213ENST00000611725 C14orf93Q9H972 538 aaKnown RBP8.12□□□□□ -1.11
SNX13-213ENST00000611725 CALD1Q05682 793 aaKnown RBP8.12□□□□□ -1.11
SNX13-213ENST00000611725 DIAPH1O60610 1272 aaKnown RBP8.12□□□□□ -1.11
SNX13-213ENST00000611725 DUSP27Q5VZP5 1158 aa8.12□□□□□ -1.11
SNX13-213ENST00000611725 PANK1Q8TE04 598 aa8.12□□□□□ -1.11
SNX13-213ENST00000611725 SOX12O15370 315 aa8.12□□□□□ -1.11
SNX13-213ENST00000611725 IDI1Q13907 227 aa8.12□□□□□ -1.11
SNX13-213ENST00000611725 C20orf194Q5TEA3 1177 aa8.12□□□□□ -1.11
SNX13-213ENST00000611725 CD109Q6YHK3 1445 aa8.12□□□□□ -1.11
SNX13-213ENST00000611725 PAK3O75914 559 aaPredicted RBP8.12□□□□□ -1.11
SNX13-213ENST00000611725 KIF21AQ7Z4S6 1674 aa8.12□□□□□ -1.11
SNX13-213ENST00000611725 KDM6BO15054 1643 aa8.11□□□□□ -1.11
SNX13-213ENST00000611725 A2MP01023 1474 aa8.11□□□□□ -1.11
SNX13-213ENST00000611725 CEP170Q5SW79 1584 aa8.11□□□□□ -1.11
SNX13-213ENST00000611725 WWC1Q8IX03 1113 aa8.11□□□□□ -1.11
SNX13-213ENST00000611725 AAMPQ13685 434 aa8.1□□□□□ -1.11
SNX13-213ENST00000611725 PRAM1Q96QH2 718 aa8.1□□□□□ -1.11
SNX13-213ENST00000611725 RTEL1-TNFRSF6BF6WH68 1400 aa8.1□□□□□ -1.11
SNX13-213ENST00000611725 DZIP1LQ8IYY4 767 aaKnown RBP8.1□□□□□ -1.11
SNX13-213ENST00000611725 ELL2O00472 640 aaPredicted RBP8.1□□□□□ -1.11
SNX13-213ENST00000611725 SLC4A3P48751 1232 aa8.1□□□□□ -1.11
SNX13-213ENST00000611725 USP35Q9P2H5 1018 aa8.1□□□□□ -1.11
SNX13-213ENST00000611725 RIPK4P57078 832 aa8.1□□□□□ -1.11
SNX13-213ENST00000611725 ABCC2Q92887 1545 aa8.1□□□□□ -1.11
SNX13-213ENST00000611725 PLA2R1Q13018 1463 aa8.1□□□□□ -1.11
SNX13-213ENST00000611725 C14orf37Q86TY3 774 aa8.09□□□□□ -1.11
SNX13-213ENST00000611725 DUOX2Q9NRD8 1548 aa8.09□□□□□ -1.11
SNX13-213ENST00000611725 COL17A1Q9UMD9 1497 aaPredicted RBP8.09□□□□□ -1.12
SNX13-213ENST00000611725 NUTM2FA1L443 756 aa8.09□□□□□ -1.12
SNX13-213ENST00000611725 INSRP06213 1382 aa8.08□□□□□ -1.12
SNX13-213ENST00000611725 SLKQ9H2G2 1235 aaPredicted RBP8.08□□□□□ -1.12
SNX13-213ENST00000611725 NOS1P29475 1434 aa8.08□□□□□ -1.12
SNX13-213ENST00000611725 NSD3Q9BZ95 1437 aa8.08□□□□□ -1.12
SNX13-213ENST00000611725 CABP1Q9NZU7 370 aa8.08□□□□□ -1.12
SNX13-213ENST00000611725 SKAP1Q86WV1 359 aa8.08□□□□□ -1.12
SNX13-213ENST00000611725 WDR63Q8IWG1 891 aa8.08□□□□□ -1.12
SNX13-213ENST00000611725 LMOD3Q0VAK6 560 aa8.08□□□□□ -1.12
SNX13-213ENST00000611725 COG3Q96JB2 828 aa8.08□□□□□ -1.12
SNX13-213ENST00000611725 DDX19BQ9UMR2 479 aa8.08□□□□□ -1.12
SNX13-213ENST00000611725 ABCA8O94911 1581 aa8.07□□□□□ -1.12
SNX13-213ENST00000611725 CARD14Q9BXL6 1004 aa8.07□□□□□ -1.12
SNX13-213ENST00000611725 ASXL2Q76L83 1435 aa8.07□□□□□ -1.12
SNX13-213ENST00000611725 ATAD2Q6PL18 1390 aa8.07□□□□□ -1.12
SNX13-213ENST00000611725 EXOSC9Q06265 439 aaKnown RBP8.07□□□□□ -1.12
SNX13-213ENST00000611725 NPC1L1Q9UHC9 1359 aa8.06□□□□□ -1.12
SNX13-213ENST00000611725 PLEKHH1Q9ULM0 1364 aa8.06□□□□□ -1.12
SNX13-213ENST00000611725 TSR2Q969E8 191 aaKnown RBP8.06□□□□□ -1.12
SNX13-213ENST00000611725 WDR7Q9Y4E6 1490 aa8.06□□□□□ -1.12
SNX13-213ENST00000611725 PRKAR2BP31323 418 aa8.06□□□□□ -1.12
SNX13-213ENST00000611725 ARXQ96QS3 562 aa8.06□□□□□ -1.12
SNX13-213ENST00000611725 FBXO31Q5XUX0 539 aaPredicted RBP8.05□□□□□ -1.12
SNX13-213ENST00000611725 ABCF1Q8NE71 845 aaKnown RBP eCLIP8.05□□□□□ -1.12
SNX13-213ENST00000611725 KIF16BQ96L93 1317 aa8.05□□□□□ -1.12
SNX13-213ENST00000611725 ITSN2Q9NZM3 1697 aa8.05□□□□□ -1.12
SNX13-213ENST00000611725 EID1Q9Y6B2 187 aa8.05□□□□□ -1.12
SNX13-213ENST00000611725 RARSP54136 660 aaKnown RBP8.04□□□□□ -1.12
SNX13-213ENST00000611725 MFAP1P55081 439 aaKnown RBP8.04□□□□□ -1.12
SNX13-213ENST00000611725 PLEKHG5O94827 1062 aa8.04□□□□□ -1.12
SNX13-213ENST00000611725 CT47B1P0C2W7 299 aaPredicted RBP8.04□□□□□ -1.12
SNX13-213ENST00000611725 GNAI1P63096 354 aa8.04□□□□□ -1.12
SNX13-213ENST00000611725 RTF1Q92541 710 aaKnown RBP8.04□□□□□ -1.12
SNX13-213ENST00000611725 HMOX1P09601 288 aa8.04□□□□□ -1.12
SNX13-213ENST00000611725 NGDNQ8NEJ9 315 aaKnown RBP8.04□□□□□ -1.12
SNX13-213ENST00000611725 PIK3C2GO75747 1445 aa8.04□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 45.5 ms