RNA–Protein interactions for RNA: ENST00000592533.5

ZNF540-210, Transcript of zinc finger protein 540, humanhuman

APPRIS P3 TSL 2 BASIC

Gene ZNF540, Length 3,147 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF540-210ENST00000592533 IPO9Q96P70 1041 aaKnown RBP15.42■□□□□ 0.06
ZNF540-210ENST00000592533 MYO3AQ8NEV4 1616 aa15.42■□□□□ 0.06
ZNF540-210ENST00000592533 MAP3K4Q9Y6R4 1608 aa15.42■□□□□ 0.06
ZNF540-210ENST00000592533 SENP3-EIF4A1A0A087X0R7 540 aa15.42■□□□□ 0.06
ZNF540-210ENST00000592533 CC2D1BQ5T0F9 858 aaKnown RBP15.42■□□□□ 0.06
ZNF540-210ENST00000592533 KIF1BO60333 1816 aa15.42■□□□□ 0.06
ZNF540-210ENST00000592533 ANP32AP39687 249 aaKnown RBP15.41■□□□□ 0.06
ZNF540-210ENST00000592533 MS4A1P11836 297 aa15.41■□□□□ 0.06
ZNF540-210ENST00000592533 SPAG9O60271 1321 aaKnown RBP15.41■□□□□ 0.06
ZNF540-210ENST00000592533 CDCA8Q53HL2 280 aa15.4■□□□□ 0.06
ZNF540-210ENST00000592533 ABCA6Q8N139 1617 aa15.4■□□□□ 0.06
ZNF540-210ENST00000592533 CDCA7LQ96GN5 454 aa15.39■□□□□ 0.05
ZNF540-210ENST00000592533 AMER1Q5JTC6 1135 aaPredicted RBP15.39■□□□□ 0.05
ZNF540-210ENST00000592533 BCL11AQ9H165 835 aa15.39■□□□□ 0.05
ZNF540-210ENST00000592533 EIF3AQ14152 1382 aaKnown RBP15.38■□□□□ 0.05
ZNF540-210ENST00000592533 ZNF521Q96K83 1311 aa15.37■□□□□ 0.05
ZNF540-210ENST00000592533 EFCAB6Q5THR3 1501 aa15.37■□□□□ 0.05
ZNF540-210ENST00000592533 PAK3O75914 559 aaPredicted RBP15.37■□□□□ 0.05
ZNF540-210ENST00000592533 PPP2R1AP30153 589 aa15.37■□□□□ 0.05
ZNF540-210ENST00000592533 NRXN1Q9ULB1 1477 aa15.36■□□□□ 0.05
ZNF540-210ENST00000592533 LMTK2Q8IWU2 1503 aa15.36■□□□□ 0.05
ZNF540-210ENST00000592533 FANCAO15360 1455 aa15.36■□□□□ 0.05
ZNF540-210ENST00000592533 KNSTRNQ9Y448 316 aa15.35■□□□□ 0.05
ZNF540-210ENST00000592533 KANK1Q14678 1352 aa15.35■□□□□ 0.05
ZNF540-210ENST00000592533 MROH2AA6NES4 1674 aa15.35■□□□□ 0.05
ZNF540-210ENST00000592533 ADAMTS8Q9UP79 889 aa15.34■□□□□ 0.05
ZNF540-210ENST00000592533 ZC3H13Q5T200 1668 aaKnown RBP15.34■□□□□ 0.05
ZNF540-210ENST00000592533 SETBP1Q9Y6X0 1596 aa15.34■□□□□ 0.05
ZNF540-210ENST00000592533 SLC24A1O60721 1099 aa15.34■□□□□ 0.05
ZNF540-210ENST00000592533 SALL2Q9Y467 1007 aaPredicted RBP15.34■□□□□ 0.05
ZNF540-210ENST00000592533 KIDINS220Q9ULH0 1771 aa15.34■□□□□ 0.05
ZNF540-210ENST00000592533 PPRC1Q5VV67 1664 aaKnown RBP15.34■□□□□ 0.05
ZNF540-210ENST00000592533 PLEKHH1Q9ULM0 1364 aa15.33■□□□□ 0.05
ZNF540-210ENST00000592533 BACH2Q9BYV9 841 aa15.33■□□□□ 0.04
ZNF540-210ENST00000592533 ERVK-7P63135 1459 aa15.32■□□□□ 0.04
ZNF540-210ENST00000592533 AFAP1Q8N556 730 aa15.32■□□□□ 0.04
ZNF540-210ENST00000592533 SBNO2Q9Y2G9 1366 aa15.31■□□□□ 0.04
ZNF540-210ENST00000592533 PDE4AP27815 886 aa15.31■□□□□ 0.04
ZNF540-210ENST00000592533 DUSP27Q5VZP5 1158 aa15.31■□□□□ 0.04
ZNF540-210ENST00000592533 ADGRL1O94910 1474 aa15.31■□□□□ 0.04
ZNF540-210ENST00000592533 ADGRB3O60242 1522 aa15.31■□□□□ 0.04
ZNF540-210ENST00000592533 ZBTB47Q9UFB7 747 aaPredicted RBP15.3■□□□□ 0.04
ZNF540-210ENST00000592533 PPLO60437 1756 aa15.3■□□□□ 0.04
ZNF540-210ENST00000592533 CRBNQ96SW2 442 aa15.3■□□□□ 0.04
ZNF540-210ENST00000592533 KDM2BQ8NHM5 1336 aa15.29■□□□□ 0.04
ZNF540-210ENST00000592533 WDR43Q15061 677 aaKnown RBP eCLIP15.29■□□□□ 0.04
ZNF540-210ENST00000592533 TRMT2AQ8IZ69 625 aaKnown RBP15.29■□□□□ 0.04
ZNF540-210ENST00000592533 UGGT1Q9NYU2 1555 aa15.29■□□□□ 0.04
ZNF540-210ENST00000592533 USP32Q8NFA0 1604 aa15.28■□□□□ 0.04
ZNF540-210ENST00000592533 PLIN1O60240 522 aa15.27■□□□□ 0.04
ZNF540-210ENST00000592533 CFAP74Q9C0B2 1584 aa15.27■□□□□ 0.03
ZNF540-210ENST00000592533 GOLGA2Q08379 1002 aa15.26■□□□□ 0.03
ZNF540-210ENST00000592533 NGEFQ8N5V2 710 aa15.26■□□□□ 0.03
ZNF540-210ENST00000592533 VIRMAQ69YN4 1812 aaKnown RBP15.26■□□□□ 0.03
ZNF540-210ENST00000592533 SHPRHQ149N8 1683 aa15.26■□□□□ 0.03
ZNF540-210ENST00000592533 SLFN5Q08AF3 891 aa15.25■□□□□ 0.03
ZNF540-210ENST00000592533 DEKP35659 375 aaKnown RBP15.25■□□□□ 0.03
ZNF540-210ENST00000592533 QRICH2Q9H0J4 1663 aa15.25■□□□□ 0.03
ZNF540-210ENST00000592533 NKTRP30414 1462 aaKnown RBP15.24■□□□□ 0.03
ZNF540-210ENST00000592533 ZNF518AQ6AHZ1 1483 aa15.24■□□□□ 0.03
ZNF540-210ENST00000592533 CENPQQ7L2Z9 268 aaPredicted RBP15.23■□□□□ 0.03
ZNF540-210ENST00000592533 C20orf194Q5TEA3 1177 aa15.23■□□□□ 0.03
ZNF540-210ENST00000592533 KIF3BO15066 747 aa15.22■□□□□ 0.03
ZNF540-210ENST00000592533 GOLGA6L2Q8N9W4 650 aaPredicted RBP15.22■□□□□ 0.03
ZNF540-210ENST00000592533 ADGRB1O14514 1584 aa15.22■□□□□ 0.03
ZNF540-210ENST00000592533 HECW2Q9P2P5 1572 aa15.21■□□□□ 0.03
ZNF540-210ENST00000592533 POLR3AO14802 1390 aaPredicted RBP15.21■□□□□ 0.03
ZNF540-210ENST00000592533 ADGRF5Q8IZF2 1346 aa15.21■□□□□ 0.03
ZNF540-210ENST00000592533 ASXL2Q76L83 1435 aa15.21■□□□□ 0.03
ZNF540-210ENST00000592533 FRMPD1Q5SYB0 1578 aa15.21■□□□□ 0.02
ZNF540-210ENST00000592533 CFAP70Q5T0N1 1121 aa15.19■□□□□ 0.02
ZNF540-210ENST00000592533 NBR1Q14596 966 aa15.19■□□□□ 0.02
ZNF540-210ENST00000592533 CARD14Q9BXL6 1004 aa15.18■□□□□ 0.02
ZNF540-210ENST00000592533 PIK3C2BO00750 1634 aa15.18■□□□□ 0.02
ZNF540-210ENST00000592533 MLH3Q9UHC1 1453 aa15.18■□□□□ 0.02
ZNF540-210ENST00000592533 NINLQ9Y2I6 1382 aa15.18■□□□□ 0.02
ZNF540-210ENST00000592533 E9PSI1 815 aa15.17■□□□□ 0.02
ZNF540-210ENST00000592533 USP35Q9P2H5 1018 aa15.17■□□□□ 0.02
ZNF540-210ENST00000592533 DDRGK1Q96HY6 314 aa15.17■□□□□ 0.02
ZNF540-210ENST00000592533 IQSEC2Q5JU85 1478 aa15.17■□□□□ 0.02
ZNF540-210ENST00000592533 NOS1P29475 1434 aa15.16■□□□□ 0.02
ZNF540-210ENST00000592533 ARHGEF28Q8N1W1 1705 aaKnown RBP15.16■□□□□ 0.02
ZNF540-210ENST00000592533 CAMSAP1Q5T5Y3 1602 aa15.16■□□□□ 0.02
ZNF540-210ENST00000592533 POGZQ7Z3K3 1410 aa15.16■□□□□ 0.02
ZNF540-210ENST00000592533 NPATQ14207 1427 aa15.15■□□□□ 0.02
ZNF540-210ENST00000592533 RTL5Q5HYW3 569 aaPredicted RBP15.15■□□□□ 0.02
ZNF540-210ENST00000592533 NPM2Q86SE8 214 aaKnown RBP15.15■□□□□ 0.02
ZNF540-210ENST00000592533 CENPJQ9HC77 1338 aaPredicted RBP15.14■□□□□ 0.01
ZNF540-210ENST00000592533 ABCC3O15438 1527 aa15.14■□□□□ 0.01
ZNF540-210ENST00000592533 APAF1O14727 1248 aa15.14■□□□□ 0.01
ZNF540-210ENST00000592533 SIGLEC1Q9BZZ2 1709 aa15.14■□□□□ 0.01
ZNF540-210ENST00000592533 SPINK5Q9NQ38 1064 aaPredicted RBP15.13■□□□□ 0.01
ZNF540-210ENST00000592533 GLI2P10070 1586 aa15.13■□□□□ 0.01
ZNF540-210ENST00000592533 RPGRIP1LQ68CZ1 1315 aa15.12■□□□□ 0.01
ZNF540-210ENST00000592533 CCDC146Q8IYE0 955 aa15.12■□□□□ 0.01
ZNF540-210ENST00000592533 C14orf93Q9H972 538 aaKnown RBP15.12■□□□□ 0.01
ZNF540-210ENST00000592533 CFAP65Q6ZU64 1925 aaKnown RBP15.12■□□□□ 0.01
ZNF540-210ENST00000592533 PPM1GO15355 546 aaPredicted RBP15.12■□□□□ 0.01
ZNF540-210ENST00000592533 PUS7Q96PZ0 661 aaKnown RBP15.12■□□□□ 0.01
ZNF540-210ENST00000592533 NSD3Q9BZ95 1437 aa15.11■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 11.1 ms