RNA–Protein interactions for RNA: ENST00000591519.1

VPS4B-207, Transcript of vacuolar protein sorting 4 homolog B, humanhuman

TSL 2 BASIC

Gene VPS4B, Length 551 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS4B-207ENST00000591519 CHIC2Q9UKJ5 165 aa16.17■□□□□ 0.18
VPS4B-207ENST00000591519 UBR1Q8IWV7 1749 aa16.16■□□□□ 0.18
VPS4B-207ENST00000591519 IQGAP1P46940 1657 aa16.16■□□□□ 0.18
VPS4B-207ENST00000591519 ILDR2Q71H61 639 aa16.16■□□□□ 0.18
VPS4B-207ENST00000591519 ARHGAP23Q9P227 1491 aa16.16■□□□□ 0.18
VPS4B-207ENST00000591519 LMTK2Q8IWU2 1503 aa16.15■□□□□ 0.18
VPS4B-207ENST00000591519 SPDYE2BA6NHP3 402 aa16.15■□□□□ 0.18
VPS4B-207ENST00000591519 SPDYE6P0CI01 402 aa16.15■□□□□ 0.18
VPS4B-207ENST00000591519 LTKP29376 864 aa16.15■□□□□ 0.18
VPS4B-207ENST00000591519 SPDYE2Q495Y8 402 aa16.15■□□□□ 0.18
VPS4B-207ENST00000591519 SLIT1O75093 1534 aa16.14■□□□□ 0.18
VPS4B-207ENST00000591519 TXNDC2Q86VQ3 553 aa16.14■□□□□ 0.17
VPS4B-207ENST00000591519 ADGRL2O95490 1459 aa16.14■□□□□ 0.17
VPS4B-207ENST00000591519 IDI1Q13907 227 aa16.13■□□□□ 0.17
VPS4B-207ENST00000591519 SCAF11Q99590 1463 aaKnown RBP16.13■□□□□ 0.17
VPS4B-207ENST00000591519 EID1Q9Y6B2 187 aa16.11■□□□□ 0.17
VPS4B-207ENST00000591519 TMEM2Q9UHN6 1383 aa16.11■□□□□ 0.17
VPS4B-207ENST00000591519 HSPA1LP34931 641 aa16.1■□□□□ 0.17
VPS4B-207ENST00000591519 FAM50AQ14320 339 aaKnown RBP16.1■□□□□ 0.17
VPS4B-207ENST00000591519 STRCP1A6NGW2 1772 aa16.1■□□□□ 0.17
VPS4B-207ENST00000591519 NOS1P29475 1434 aa16.1■□□□□ 0.17
VPS4B-207ENST00000591519 LRRC7Q96NW7 1537 aa16.09■□□□□ 0.17
VPS4B-207ENST00000591519 KDM5AP29375 1690 aaKnown RBP16.09■□□□□ 0.17
VPS4B-207ENST00000591519 SOCS7O14512 581 aa16.09■□□□□ 0.17
VPS4B-207ENST00000591519 PIP4K2BP78356 416 aa16.09■□□□□ 0.17
VPS4B-207ENST00000591519 FXR2P51116 673 aaKnown RBP eCLIP16.08■□□□□ 0.16
VPS4B-207ENST00000591519 SLC52A1Q9NWF4 448 aa16.08■□□□□ 0.16
VPS4B-207ENST00000591519 STAG3Q9UJ98 1225 aa16.08■□□□□ 0.16
VPS4B-207ENST00000591519 ANKRD50Q9ULJ7 1429 aa16.08■□□□□ 0.16
VPS4B-207ENST00000591519 PIK3C2BO00750 1634 aa16.08■□□□□ 0.16
VPS4B-207ENST00000591519 ALKQ9UM73 1620 aa16.08■□□□□ 0.16
VPS4B-207ENST00000591519 EFCAB6Q5THR3 1501 aa16.05■□□□□ 0.16
VPS4B-207ENST00000591519 SYNMO15061 1565 aa16.04■□□□□ 0.16
VPS4B-207ENST00000591519 RPRD2Q5VT52 1461 aaKnown RBP16.04■□□□□ 0.16
VPS4B-207ENST00000591519 ROCK1Q13464 1354 aa16.02■□□□□ 0.16
VPS4B-207ENST00000591519 SP7Q8TDD2 431 aaPredicted RBP16.02■□□□□ 0.16
VPS4B-207ENST00000591519 TET3O43151 1660 aa16.02■□□□□ 0.15
VPS4B-207ENST00000591519 KCNA6P17658 529 aa16.01■□□□□ 0.15
VPS4B-207ENST00000591519 ZNF692Q9BU19 519 aaPredicted RBP16■□□□□ 0.15
VPS4B-207ENST00000591519 HDGFP51858 240 aaKnown RBP15.98■□□□□ 0.15
VPS4B-207ENST00000591519 SLC26A8Q96RN1 970 aa15.98■□□□□ 0.15
VPS4B-207ENST00000591519 ADGRB3O60242 1522 aa15.98■□□□□ 0.15
VPS4B-207ENST00000591519 XIRP1Q702N8 1843 aaKnown RBP15.97■□□□□ 0.15
VPS4B-207ENST00000591519 CLEC11AQ9Y240 323 aa15.97■□□□□ 0.15
VPS4B-207ENST00000591519 HAX1O00165 279 aa15.96■□□□□ 0.15
VPS4B-207ENST00000591519 UNC13BO14795 1591 aa15.96■□□□□ 0.14
VPS4B-207ENST00000591519 SSUH2Q9Y2M2 353 aa15.95■□□□□ 0.14
VPS4B-207ENST00000591519 MED1Q15648 1581 aaPredicted RBP15.95■□□□□ 0.14
VPS4B-207ENST00000591519 ZFYVE9O95405 1425 aa15.94■□□□□ 0.14
VPS4B-207ENST00000591519 PROSER2Q86WR7 435 aaPredicted RBP15.94■□□□□ 0.14
VPS4B-207ENST00000591519 TMEM94Q12767 1356 aa15.94■□□□□ 0.14
VPS4B-207ENST00000591519 GCC2Q8IWJ2 1684 aa15.94■□□□□ 0.14
VPS4B-207ENST00000591519 FAM135BQ49AJ0 1406 aa15.94■□□□□ 0.14
VPS4B-207ENST00000591519 PLEKHG1Q9ULL1 1385 aa15.93■□□□□ 0.14
VPS4B-207ENST00000591519 TBX22Q9Y458 520 aa15.93■□□□□ 0.14
VPS4B-207ENST00000591519 TMEM131LA2VDJ0 1609 aa15.93■□□□□ 0.14
VPS4B-207ENST00000591519 ABCF1Q8NE71 845 aaKnown RBP eCLIP15.91■□□□□ 0.14
VPS4B-207ENST00000591519 RIMS2Q9UQ26 1411 aa15.91■□□□□ 0.14
VPS4B-207ENST00000591519 NUP155O75694 1391 aa15.9■□□□□ 0.14
VPS4B-207ENST00000591519 E9PCH4 1651 aa15.9■□□□□ 0.14
VPS4B-207ENST00000591519 SPDYE1Q8NFV5 336 aaPredicted RBP15.9■□□□□ 0.14
VPS4B-207ENST00000591519 BCANQ96GW7 911 aa15.9■□□□□ 0.14
VPS4B-207ENST00000591519 NKTRP30414 1462 aaKnown RBP15.9■□□□□ 0.14
VPS4B-207ENST00000591519 IQGAP3Q86VI3 1631 aa15.9■□□□□ 0.14
VPS4B-207ENST00000591519 MYO5BQ9ULV0 1848 aa15.89■□□□□ 0.13
VPS4B-207ENST00000591519 NWD1Q149M9 1564 aa15.89■□□□□ 0.13
VPS4B-207ENST00000591519 PPP1R15AO75807 674 aaPredicted RBP15.88■□□□□ 0.13
VPS4B-207ENST00000591519 ITGAEP38570 1179 aa15.88■□□□□ 0.13
VPS4B-207ENST00000591519 CHD2O14647 1828 aaKnown RBP15.87■□□□□ 0.13
VPS4B-207ENST00000591519 PPARGC1BQ86YN6 1023 aaKnown RBP15.87■□□□□ 0.13
VPS4B-207ENST00000591519 RBM33Q96EV2 1170 aaKnown RBP15.87■□□□□ 0.13
VPS4B-207ENST00000591519 NCOA3Q9Y6Q9 1424 aa15.86■□□□□ 0.13
VPS4B-207ENST00000591519 CHGAP10645 457 aaKnown RBP15.86■□□□□ 0.13
VPS4B-207ENST00000591519 SLAIN2Q9P270 581 aa15.85■□□□□ 0.13
VPS4B-207ENST00000591519 PIK3R4Q99570 1358 aa15.85■□□□□ 0.13
VPS4B-207ENST00000591519 ADAMTS13Q76LX8 1427 aa15.85■□□□□ 0.13
VPS4B-207ENST00000591519 PRKAR2AP13861 404 aaKnown RBP15.84■□□□□ 0.13
VPS4B-207ENST00000591519 MSH6P52701 1360 aa15.84■□□□□ 0.13
VPS4B-207ENST00000591519 RRBP1Q9P2E9 1410 aaKnown RBP15.82■□□□□ 0.12
VPS4B-207ENST00000591519 NUTM2DQ5VT03 806 aaPredicted RBP15.81■□□□□ 0.12
VPS4B-207ENST00000591519 ROBO1Q9Y6N7 1651 aa15.8■□□□□ 0.12
VPS4B-207ENST00000591519 DIP2AQ14689 1571 aa15.8■□□□□ 0.12
VPS4B-207ENST00000591519 EVX2Q03828 476 aa15.8■□□□□ 0.12
VPS4B-207ENST00000591519 RGS17Q9UGC6 210 aaPredicted RBP15.8■□□□□ 0.12
VPS4B-207ENST00000591519 C19orf44Q9H6X5 657 aa15.79■□□□□ 0.12
VPS4B-207ENST00000591519 CADPS2Q86UW7 1296 aa15.77■□□□□ 0.12
VPS4B-207ENST00000591519 AMOTL2Q9Y2J4 779 aa15.77■□□□□ 0.12
VPS4B-207ENST00000591519 NAIPQ13075 1403 aa15.77■□□□□ 0.11
VPS4B-207ENST00000591519 SPHKAPQ2M3C7 1700 aa15.75■□□□□ 0.11
VPS4B-207ENST00000591519 PTPRUQ92729 1446 aa15.75■□□□□ 0.11
VPS4B-207ENST00000591519 TRPM2O94759 1503 aa15.74■□□□□ 0.11
VPS4B-207ENST00000591519 ATF3P18847 181 aa15.73■□□□□ 0.11
VPS4B-207ENST00000591519 C14orf37Q86TY3 774 aa15.73■□□□□ 0.11
VPS4B-207ENST00000591519 SETBP1Q9Y6X0 1596 aa15.73■□□□□ 0.11
VPS4B-207ENST00000591519 ZNF326Q5BKZ1 582 aaKnown RBP15.72■□□□□ 0.11
VPS4B-207ENST00000591519 JCADQ9P266 1359 aa15.72■□□□□ 0.11
VPS4B-207ENST00000591519 NRXN3Q9Y4C0 1643 aa15.72■□□□□ 0.11
VPS4B-207ENST00000591519 SIPA1L2Q9P2F8 1722 aaPredicted RBP15.71■□□□□ 0.11
VPS4B-207ENST00000591519 HFM1A2PYH4 1435 aa15.7■□□□□ 0.1
VPS4B-207ENST00000591519 CHADLQ6NUI6 762 aa15.7■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 8.6 ms