RNA–Protein interactions for RNA: ENST00000588109.5

LIG3-210, Transcript of DNA ligase 3, humanhuman

TSL 4

Gene LIG3, Length 592 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-210ENST00000588109 FAM69CQ0P6D2 419 aa8.05□□□□□ -1.12
LIG3-210ENST00000588109 FAM50AQ14320 339 aaKnown RBP8.05□□□□□ -1.12
LIG3-210ENST00000588109 FAM163AQ96GL9 167 aaPredicted RBP8.05□□□□□ -1.12
LIG3-210ENST00000588109 ZNF777Q9ULD5 760 aaPredicted RBP8.05□□□□□ -1.12
LIG3-210ENST00000588109 CDC42BPAQ5VT25 1732 aa8.05□□□□□ -1.12
LIG3-210ENST00000588109 FGD6Q6ZV73 1430 aa8.04□□□□□ -1.12
LIG3-210ENST00000588109 VSIG10Q8N0Z9 540 aa8.04□□□□□ -1.12
LIG3-210ENST00000588109 GLI2P10070 1586 aa8.04□□□□□ -1.12
LIG3-210ENST00000588109 CD109Q6YHK3 1445 aa8.03□□□□□ -1.12
LIG3-210ENST00000588109 MIA2Q96PC5 1412 aa8.03□□□□□ -1.12
LIG3-210ENST00000588109 RRBP1Q9P2E9 1410 aaKnown RBP8.03□□□□□ -1.12
LIG3-210ENST00000588109 PTPN23Q9H3S7 1636 aa8.03□□□□□ -1.12
LIG3-210ENST00000588109 TBC1D12O60347 775 aa8.03□□□□□ -1.12
LIG3-210ENST00000588109 CDC42BPBQ9Y5S2 1711 aa8.03□□□□□ -1.12
LIG3-210ENST00000588109 PLCH2O75038 1416 aa8.03□□□□□ -1.12
LIG3-210ENST00000588109 MFSD10Q14728 455 aa8.02□□□□□ -1.13
LIG3-210ENST00000588109 EFCAB2Q5VUJ9 269 aa8.02□□□□□ -1.13
LIG3-210ENST00000588109 MAP3K4Q9Y6R4 1608 aa8.02□□□□□ -1.13
LIG3-210ENST00000588109 CAMSAP2Q08AD1 1489 aa8.01□□□□□ -1.13
LIG3-210ENST00000588109 ITGAEP38570 1179 aa8.01□□□□□ -1.13
LIG3-210ENST00000588109 PCGF6Q9BYE7 350 aa8.01□□□□□ -1.13
LIG3-210ENST00000588109 ARAP3Q8WWN8 1544 aa8.01□□□□□ -1.13
LIG3-210ENST00000588109 KIF13AQ9H1H9 1805 aa8.01□□□□□ -1.13
LIG3-210ENST00000588109 ZNF644Q9H582 1327 aaPredicted RBP8.01□□□□□ -1.13
LIG3-210ENST00000588109 FANCAO15360 1455 aa8□□□□□ -1.13
LIG3-210ENST00000588109 TCOF1Q13428 1488 aaKnown RBP8□□□□□ -1.13
LIG3-210ENST00000588109 SAMD9LQ8IVG5 1584 aa8□□□□□ -1.13
LIG3-210ENST00000588109 CFAP74Q9C0B2 1584 aa8□□□□□ -1.13
LIG3-210ENST00000588109 TSPOAP1O95153 1857 aa8□□□□□ -1.13
LIG3-210ENST00000588109 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP7.99□□□□□ -1.13
LIG3-210ENST00000588109 E2F4Q16254 413 aa7.99□□□□□ -1.13
LIG3-210ENST00000588109 PLEKHH2Q8IVE3 1493 aa7.99□□□□□ -1.13
LIG3-210ENST00000588109 SLC34A2O95436 690 aa7.98□□□□□ -1.13
LIG3-210ENST00000588109 HOXB3P14651 431 aaPredicted RBP7.98□□□□□ -1.13
LIG3-210ENST00000588109 MAP3K9P80192 1104 aa7.98□□□□□ -1.13
LIG3-210ENST00000588109 UPF1Q92900 1129 aaKnown RBP eCLIP7.98□□□□□ -1.13
LIG3-210ENST00000588109 ZSWIM6Q9HCJ5 1215 aa7.98□□□□□ -1.13
LIG3-210ENST00000588109 ADGRL1O94910 1474 aa7.98□□□□□ -1.13
LIG3-210ENST00000588109 TEX14Q8IWB6 1497 aa7.98□□□□□ -1.13
LIG3-210ENST00000588109 ABCC1P33527 1531 aa7.98□□□□□ -1.13
LIG3-210ENST00000588109 SYCP2Q9BX26 1530 aa7.98□□□□□ -1.13
LIG3-210ENST00000588109 AKNAQ7Z591 1439 aa7.97□□□□□ -1.13
LIG3-210ENST00000588109 HNRNPMP52272 730 aaKnown RBP eCLIP7.97□□□□□ -1.13
LIG3-210ENST00000588109 NEO1Q92859 1461 aa7.97□□□□□ -1.13
LIG3-210ENST00000588109 DNMT1P26358 1616 aaKnown RBP7.96□□□□□ -1.13
LIG3-210ENST00000588109 DAPK1P53355 1430 aa7.96□□□□□ -1.13
LIG3-210ENST00000588109 KIAA1107Q9UPP5 1409 aa7.96□□□□□ -1.13
LIG3-210ENST00000588109 ZNF316A6NFI3 1004 aaPredicted RBP7.96□□□□□ -1.14
LIG3-210ENST00000588109 PPRC1Q5VV67 1664 aaKnown RBP7.95□□□□□ -1.14
LIG3-210ENST00000588109 SCAPERQ9BY12 1400 aa7.95□□□□□ -1.14
LIG3-210ENST00000588109 CCDC141Q6ZP82 1450 aa7.95□□□□□ -1.14
LIG3-210ENST00000588109 ST18O60284 1047 aa7.95□□□□□ -1.14
LIG3-210ENST00000588109 TSPY4P0CV99 314 aa7.95□□□□□ -1.14
LIG3-210ENST00000588109 TSPY10P0CW01 314 aa7.95□□□□□ -1.14
LIG3-210ENST00000588109 ARSIQ5FYB1 569 aa7.95□□□□□ -1.14
LIG3-210ENST00000588109 RSPH4AQ5TD94 716 aa7.95□□□□□ -1.14
LIG3-210ENST00000588109 PTCD2Q8WV60 388 aaKnown RBP7.95□□□□□ -1.14
LIG3-210ENST00000588109 PCDHGA4Q9Y5G9 962 aa7.95□□□□□ -1.14
LIG3-210ENST00000588109 ARHGEF5Q12774 1597 aa7.95□□□□□ -1.14
LIG3-210ENST00000588109 ABCC5O15440 1437 aa7.95□□□□□ -1.14
LIG3-210ENST00000588109 ARHGEF12Q9NZN5 1544 aa7.94□□□□□ -1.14
LIG3-210ENST00000588109 CHIC2Q9UKJ5 165 aa7.94□□□□□ -1.14
LIG3-210ENST00000588109 MYT1LQ9UL68 1186 aa7.94□□□□□ -1.14
LIG3-210ENST00000588109 KDM2AQ9Y2K7 1162 aa7.94□□□□□ -1.14
LIG3-210ENST00000588109 CROCC2H7BZ55 1655 aa7.94□□□□□ -1.14
LIG3-210ENST00000588109 MBD5Q9P267 1494 aa7.94□□□□□ -1.14
LIG3-210ENST00000588109 CAMK2BQ13554 666 aa7.93□□□□□ -1.14
LIG3-210ENST00000588109 C9orf84Q5VXU9 1444 aa7.93□□□□□ -1.14
LIG3-210ENST00000588109 TRAPPC8Q9Y2L5 1435 aa7.93□□□□□ -1.14
LIG3-210ENST00000588109 DENND4BO75064 1496 aaPredicted RBP7.93□□□□□ -1.14
LIG3-210ENST00000588109 ZNF518AQ6AHZ1 1483 aa7.93□□□□□ -1.14
LIG3-210ENST00000588109 SHANK2Q9UPX8 1470 aa7.93□□□□□ -1.14
LIG3-210ENST00000588109 ADGBQ8N7X0 1667 aa7.92□□□□□ -1.14
LIG3-210ENST00000588109 HOXB1P14653 301 aaPredicted RBP7.92□□□□□ -1.14
LIG3-210ENST00000588109 AFAP1Q8N556 730 aa7.92□□□□□ -1.14
LIG3-210ENST00000588109 OXER1Q8TDS5 423 aa7.92□□□□□ -1.14
LIG3-210ENST00000588109 SPAG9O60271 1321 aaKnown RBP7.92□□□□□ -1.14
LIG3-210ENST00000588109 PTPRKQ15262 1439 aa7.92□□□□□ -1.14
LIG3-210ENST00000588109 POGZQ7Z3K3 1410 aa7.92□□□□□ -1.14
LIG3-210ENST00000588109 RAPGEF3O95398 923 aa7.91□□□□□ -1.14
LIG3-210ENST00000588109 EMP3P54852 163 aa7.91□□□□□ -1.14
LIG3-210ENST00000588109 GPR153Q6NV75 609 aa7.91□□□□□ -1.14
LIG3-210ENST00000588109 RRP7BPQ9NSQ0 103 aa7.91□□□□□ -1.14
LIG3-210ENST00000588109 EMILIN3Q9NT22 766 aa7.91□□□□□ -1.14
LIG3-210ENST00000588109 ANKRD30AQ9BXX3 1397 aa7.91□□□□□ -1.14
LIG3-210ENST00000588109 MAST1Q9Y2H9 1570 aa7.9□□□□□ -1.14
LIG3-210ENST00000588109 ROCK1Q13464 1354 aa7.9□□□□□ -1.14
LIG3-210ENST00000588109 DPYSL4O14531 572 aa7.9□□□□□ -1.14
LIG3-210ENST00000588109 NUDT7P0C024 238 aa7.9□□□□□ -1.14
LIG3-210ENST00000588109 KHSRPQ92945 711 aaKnown RBP eCLIP7.9□□□□□ -1.14
LIG3-210ENST00000588109 RICTORQ6R327 1708 aa7.89□□□□□ -1.15
LIG3-210ENST00000588109 ATP7AQ04656 1500 aa7.89□□□□□ -1.15
LIG3-210ENST00000588109 ERBB3P21860 1342 aa7.89□□□□□ -1.15
LIG3-210ENST00000588109 ARHGEF1Q92888 912 aaKnown RBP7.89□□□□□ -1.15
LIG3-210ENST00000588109 MARVELD3Q96A59 401 aa7.89□□□□□ -1.15
LIG3-210ENST00000588109 KDM5CP41229 1560 aa7.88□□□□□ -1.15
LIG3-210ENST00000588109 HECW2Q9P2P5 1572 aa7.88□□□□□ -1.15
LIG3-210ENST00000588109 INO80Q9ULG1 1556 aaPredicted RBP7.88□□□□□ -1.15
LIG3-210ENST00000588109 ZFYVE16Q7Z3T8 1539 aa7.88□□□□□ -1.15
LIG3-210ENST00000588109 ADGRL2O95490 1459 aa7.88□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.4 ms