RNA–Protein interactions for RNA: ENST00000583879.5

VAPA-207, Transcript of VAMP associated protein A, humanhuman

TSL 2

Gene VAPA, Length 719 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPA-207ENST00000583879 ITSN2Q9NZM3 1697 aa8.62□□□□□ -1.03
VAPA-207ENST00000583879 SPATA31D1Q6ZQQ2 1576 aa8.61□□□□□ -1.03
VAPA-207ENST00000583879 SYCP2Q9BX26 1530 aa8.61□□□□□ -1.03
VAPA-207ENST00000583879 TCOF1Q13428 1488 aaKnown RBP8.61□□□□□ -1.03
VAPA-207ENST00000583879 FYCO1Q9BQS8 1478 aa8.61□□□□□ -1.03
VAPA-207ENST00000583879 ST18O60284 1047 aa8.6□□□□□ -1.03
VAPA-207ENST00000583879 TOM1O60784 492 aa8.6□□□□□ -1.03
VAPA-207ENST00000583879 IRX5P78411 483 aaPredicted RBP8.6□□□□□ -1.03
VAPA-207ENST00000583879 FBXO31Q5XUX0 539 aaPredicted RBP8.6□□□□□ -1.03
VAPA-207ENST00000583879 MTUS2Q5JR59 1369 aa8.6□□□□□ -1.03
VAPA-207ENST00000583879 DHX29Q7Z478 1369 aaKnown RBP8.6□□□□□ -1.03
VAPA-207ENST00000583879 ATP7AQ04656 1500 aa8.59□□□□□ -1.03
VAPA-207ENST00000583879 MROH2AA6NES4 1674 aa8.59□□□□□ -1.03
VAPA-207ENST00000583879 KIF3BO15066 747 aa8.59□□□□□ -1.03
VAPA-207ENST00000583879 HSPA1LP34931 641 aa8.59□□□□□ -1.03
VAPA-207ENST00000583879 RSPH4AQ5TD94 716 aa8.59□□□□□ -1.03
VAPA-207ENST00000583879 ANKLE2Q86XL3 938 aa8.59□□□□□ -1.03
VAPA-207ENST00000583879 OCEL1Q9H607 264 aa8.59□□□□□ -1.03
VAPA-207ENST00000583879 CDC42BPAQ5VT25 1732 aa8.59□□□□□ -1.03
VAPA-207ENST00000583879 RTEL1-TNFRSF6BF6WH68 1400 aa8.58□□□□□ -1.04
VAPA-207ENST00000583879 PYGBP11216 843 aa8.58□□□□□ -1.04
VAPA-207ENST00000583879 PIP4K2BP78356 416 aa8.58□□□□□ -1.04
VAPA-207ENST00000583879 THEMISQ8N1K5 641 aaPredicted RBP8.58□□□□□ -1.04
VAPA-207ENST00000583879 MBD5Q9P267 1494 aa8.57□□□□□ -1.04
VAPA-207ENST00000583879 SUPT6HQ7KZ85 1726 aaKnown RBP8.57□□□□□ -1.04
VAPA-207ENST00000583879 WASHC2CQ9Y4E1 1318 aa8.57□□□□□ -1.04
VAPA-207ENST00000583879 PLXNC1O60486 1568 aa8.57□□□□□ -1.04
VAPA-207ENST00000583879 A2ML1A8K2U0 1454 aa8.57□□□□□ -1.04
VAPA-207ENST00000583879 CEP170BQ9Y4F5 1589 aaPredicted RBP8.56□□□□□ -1.04
VAPA-207ENST00000583879 FBXO3Q9UK99 471 aa8.56□□□□□ -1.04
VAPA-207ENST00000583879 TNRQ92752 1358 aa8.56□□□□□ -1.04
VAPA-207ENST00000583879 CLTCQ00610 1675 aaKnown RBP8.56□□□□□ -1.04
VAPA-207ENST00000583879 TSPY4P0CV99 314 aa8.55□□□□□ -1.04
VAPA-207ENST00000583879 TSPY10P0CW01 314 aa8.55□□□□□ -1.04
VAPA-207ENST00000583879 INO80Q9ULG1 1556 aaPredicted RBP8.55□□□□□ -1.04
VAPA-207ENST00000583879 MIA2Q96PC5 1412 aa8.54□□□□□ -1.04
VAPA-207ENST00000583879 MYO3AQ8NEV4 1616 aa8.54□□□□□ -1.04
VAPA-207ENST00000583879 SHANK2Q9UPX8 1470 aa8.54□□□□□ -1.04
VAPA-207ENST00000583879 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP8.54□□□□□ -1.04
VAPA-207ENST00000583879 EIF2AK3Q9NZJ5 1116 aaKnown RBP8.54□□□□□ -1.04
VAPA-207ENST00000583879 PCDHB8Q9UN66 801 aa8.54□□□□□ -1.04
VAPA-207ENST00000583879 SNPHO15079 494 aa8.53□□□□□ -1.04
VAPA-207ENST00000583879 DNMT1P26358 1616 aaKnown RBP8.53□□□□□ -1.04
VAPA-207ENST00000583879 CPS1P31327 1500 aa8.53□□□□□ -1.04
VAPA-207ENST00000583879 CEP162Q5TB80 1403 aa8.53□□□□□ -1.04
VAPA-207ENST00000583879 ZNF142P52746 1687 aaPredicted RBP8.53□□□□□ -1.04
VAPA-207ENST00000583879 PZPP20742 1482 aa8.52□□□□□ -1.05
VAPA-207ENST00000583879 TMEM121BQ9BXQ6 578 aaPredicted RBP8.52□□□□□ -1.05
VAPA-207ENST00000583879 ADGBQ8N7X0 1667 aa8.5□□□□□ -1.05
VAPA-207ENST00000583879 NPHP4O75161 1426 aaPredicted RBP8.5□□□□□ -1.05
VAPA-207ENST00000583879 TIAM1Q13009 1591 aa8.5□□□□□ -1.05
VAPA-207ENST00000583879 MED14O60244 1454 aa8.5□□□□□ -1.05
VAPA-207ENST00000583879 CCDC141Q6ZP82 1450 aa8.5□□□□□ -1.05
VAPA-207ENST00000583879 NLRP1Q9C000 1473 aa8.5□□□□□ -1.05
VAPA-207ENST00000583879 FAM135AQ9P2D6 1515 aa8.49□□□□□ -1.05
VAPA-207ENST00000583879 GOLGA2Q08379 1002 aa8.49□□□□□ -1.05
VAPA-207ENST00000583879 GSE1Q14687 1217 aa8.49□□□□□ -1.05
VAPA-207ENST00000583879 KDM5DQ9BY66 1539 aa8.49□□□□□ -1.05
VAPA-207ENST00000583879 NEURL4Q96JN8 1562 aa8.48□□□□□ -1.05
VAPA-207ENST00000583879 UGGT1Q9NYU2 1555 aa8.48□□□□□ -1.05
VAPA-207ENST00000583879 ZNF467Q7Z7K2 595 aaPredicted RBP8.48□□□□□ -1.05
VAPA-207ENST00000583879 KLHL34Q8N239 644 aa8.48□□□□□ -1.05
VAPA-207ENST00000583879 NCOA2Q15596 1464 aa8.48□□□□□ -1.05
VAPA-207ENST00000583879 EHBP1L1Q8N3D4 1523 aa8.48□□□□□ -1.05
VAPA-207ENST00000583879 MED1Q15648 1581 aaPredicted RBP8.48□□□□□ -1.05
VAPA-207ENST00000583879 MKRN3Q13064 507 aaKnown RBP8.47□□□□□ -1.05
VAPA-207ENST00000583879 TXNDC2Q86VQ3 553 aa8.47□□□□□ -1.05
VAPA-207ENST00000583879 VWDEQ8N2E2 1590 aa8.47□□□□□ -1.05
VAPA-207ENST00000583879 CAMSAP2Q08AD1 1489 aa8.46□□□□□ -1.05
VAPA-207ENST00000583879 C3orf67Q6ZVT6 689 aa8.46□□□□□ -1.06
VAPA-207ENST00000583879 LRRC7Q96NW7 1537 aa8.45□□□□□ -1.06
VAPA-207ENST00000583879 SLC24A1O60721 1099 aa8.45□□□□□ -1.06
VAPA-207ENST00000583879 LTKP29376 864 aa8.45□□□□□ -1.06
VAPA-207ENST00000583879 L3MBTL3Q96JM7 780 aaPredicted RBP8.45□□□□□ -1.06
VAPA-207ENST00000583879 DEPDC5O75140 1603 aa8.44□□□□□ -1.06
VAPA-207ENST00000583879 ALKQ9UM73 1620 aa8.44□□□□□ -1.06
VAPA-207ENST00000583879 PDCD7Q8N8D1 485 aaKnown RBP8.44□□□□□ -1.06
VAPA-207ENST00000583879 MARVELD3Q96A59 401 aa8.44□□□□□ -1.06
VAPA-207ENST00000583879 RGS17Q9UGC6 210 aaPredicted RBP8.44□□□□□ -1.06
VAPA-207ENST00000583879 EID1Q9Y6B2 187 aa8.44□□□□□ -1.06
VAPA-207ENST00000583879 KANK4Q5T7N3 995 aaPredicted RBP8.43□□□□□ -1.06
VAPA-207ENST00000583879 ARHGEF5Q12774 1597 aa8.43□□□□□ -1.06
VAPA-207ENST00000583879 POLR1AO95602 1720 aaPredicted RBP8.43□□□□□ -1.06
VAPA-207ENST00000583879 VASPP50552 380 aaPredicted RBP8.42□□□□□ -1.06
VAPA-207ENST00000583879 SPNS2Q8IVW8 549 aa8.42□□□□□ -1.06
VAPA-207ENST00000583879 ERVK-7P63135 1459 aa8.42□□□□□ -1.06
VAPA-207ENST00000583879 ABCC3O15438 1527 aa8.42□□□□□ -1.06
VAPA-207ENST00000583879 CHRM1P11229 460 aaPredicted RBP8.41□□□□□ -1.06
VAPA-207ENST00000583879 MMRN1Q13201 1228 aa8.41□□□□□ -1.06
VAPA-207ENST00000583879 RRP7BPQ9NSQ0 103 aa8.41□□□□□ -1.06
VAPA-207ENST00000583879 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP8.41□□□□□ -1.061e-7■■□□□ 12.4
VAPA-207ENST00000583879 IQGAP1P46940 1657 aa8.4□□□□□ -1.06
VAPA-207ENST00000583879 LRRC9Q6ZRR7 1453 aa8.4□□□□□ -1.06
VAPA-207ENST00000583879 SCAF11Q99590 1463 aaKnown RBP8.4□□□□□ -1.06
VAPA-207ENST00000583879 ARHGAP31Q2M1Z3 1444 aa8.4□□□□□ -1.06
VAPA-207ENST00000583879 KCNA6P17658 529 aa8.4□□□□□ -1.06
VAPA-207ENST00000583879 IDI1Q13907 227 aa8.4□□□□□ -1.06
VAPA-207ENST00000583879 ARHGAP23Q9P227 1491 aa8.39□□□□□ -1.07
VAPA-207ENST00000583879 FAM135BQ49AJ0 1406 aa8.39□□□□□ -1.07
VAPA-207ENST00000583879 MYOM3Q5VTT5 1437 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 61.1 ms