RNA–Protein interactions for RNA: ENST00000583438.1

PPP4R1-225, Transcript of protein phosphatase 4 regulatory subunit 1, humanhuman

TSL 4

Gene PPP4R1, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PPP4R1-225ENST00000583438 PTPRTO14522 1441 aa13.03□□□□□ -0.32
PPP4R1-225ENST00000583438 GABBR2O75899 941 aa13.02□□□□□ -0.33
PPP4R1-225ENST00000583438 RYDENQ9NUL5 291 aaKnown RBP13.02□□□□□ -0.33
PPP4R1-225ENST00000583438 PHF8Q9UPP1 1060 aa13.01□□□□□ -0.33
PPP4R1-225ENST00000583438 CDK11AQ9UQ88 783 aaPredicted RBP13.01□□□□□ -0.33
PPP4R1-225ENST00000583438 SPATA31D1Q6ZQQ2 1576 aa13.01□□□□□ -0.33
PPP4R1-225ENST00000583438 CEP170BQ9Y4F5 1589 aaPredicted RBP13□□□□□ -0.33
PPP4R1-225ENST00000583438 SOX12O15370 315 aa13□□□□□ -0.33
PPP4R1-225ENST00000583438 VSIG10Q8N0Z9 540 aa13□□□□□ -0.33
PPP4R1-225ENST00000583438 FBXO22Q8NEZ5 403 aa13□□□□□ -0.33
PPP4R1-225ENST00000583438 KDM2AQ9Y2K7 1162 aa13□□□□□ -0.33
PPP4R1-225ENST00000583438 HNRNPMP52272 730 aaKnown RBP eCLIP12.98□□□□□ -0.33
PPP4R1-225ENST00000583438 NEURL4Q96JN8 1562 aa12.98□□□□□ -0.33
PPP4R1-225ENST00000583438 MBD5Q9P267 1494 aa12.97□□□□□ -0.33
PPP4R1-225ENST00000583438 PTPRKQ15262 1439 aa12.97□□□□□ -0.33
PPP4R1-225ENST00000583438 POLR1AO95602 1720 aaPredicted RBP12.97□□□□□ -0.33
PPP4R1-225ENST00000583438 ZNF644Q9H582 1327 aaPredicted RBP12.97□□□□□ -0.33
PPP4R1-225ENST00000583438 GOLGA2Q08379 1002 aa12.97□□□□□ -0.33
PPP4R1-225ENST00000583438 A2MP01023 1474 aa12.97□□□□□ -0.33
PPP4R1-225ENST00000583438 NPATQ14207 1427 aa12.96□□□□□ -0.33
PPP4R1-225ENST00000583438 CNTLNQ9NXG0 1405 aa12.96□□□□□ -0.33
PPP4R1-225ENST00000583438 DNMT1P26358 1616 aaKnown RBP12.96□□□□□ -0.33
PPP4R1-225ENST00000583438 NLRP6P59044 892 aa12.96□□□□□ -0.33
PPP4R1-225ENST00000583438 MYT1LQ9UL68 1186 aa12.96□□□□□ -0.33
PPP4R1-225ENST00000583438 TRIM35Q9UPQ4 493 aa12.96□□□□□ -0.33
PPP4R1-225ENST00000583438 TCOF1Q13428 1488 aaKnown RBP12.96□□□□□ -0.34
PPP4R1-225ENST00000583438 ZMYM3Q14202 1370 aa12.95□□□□□ -0.34
PPP4R1-225ENST00000583438 ATN1P54259 1190 aaPredicted RBP12.95□□□□□ -0.34
PPP4R1-225ENST00000583438 ZNF777Q9ULD5 760 aaPredicted RBP12.95□□□□□ -0.34
PPP4R1-225ENST00000583438 KIAA1107Q9UPP5 1409 aa12.95□□□□□ -0.34
PPP4R1-225ENST00000583438 MKRN3Q13064 507 aaKnown RBP12.94□□□□□ -0.34
PPP4R1-225ENST00000583438 ALKQ9UM73 1620 aa12.94□□□□□ -0.34
PPP4R1-225ENST00000583438 ZNF335Q9H4Z2 1342 aaPredicted RBP12.93□□□□□ -0.34
PPP4R1-225ENST00000583438 NCKAP5LQ9HCH0 1330 aa12.93□□□□□ -0.34
PPP4R1-225ENST00000583438 IQSEC2Q5JU85 1478 aa12.93□□□□□ -0.34
PPP4R1-225ENST00000583438 ATMINO43313 823 aaPredicted RBP12.93□□□□□ -0.34
PPP4R1-225ENST00000583438 PPP1R37O75864 691 aa12.93□□□□□ -0.34
PPP4R1-225ENST00000583438 MS4A4AQ96JQ5 239 aa12.93□□□□□ -0.34
PPP4R1-225ENST00000583438 STRCP1A6NGW2 1772 aa12.93□□□□□ -0.34
PPP4R1-225ENST00000583438 DISP3Q9P2K9 1392 aa12.93□□□□□ -0.34
PPP4R1-225ENST00000583438 EHBP1L1Q8N3D4 1523 aa12.93□□□□□ -0.34
PPP4R1-225ENST00000583438 SPAG9O60271 1321 aaKnown RBP12.92□□□□□ -0.34
PPP4R1-225ENST00000583438 ASTLQ6HA08 431 aaPredicted RBP12.92□□□□□ -0.34
PPP4R1-225ENST00000583438 PLA2R1Q13018 1463 aa12.91□□□□□ -0.34
PPP4R1-225ENST00000583438 CCNB3Q8WWL7 1395 aa12.89□□□□□ -0.35
PPP4R1-225ENST00000583438 PLEKHH2Q8IVE3 1493 aa12.89□□□□□ -0.35
PPP4R1-225ENST00000583438 MROH1Q8NDA8 1641 aa12.88□□□□□ -0.35
PPP4R1-225ENST00000583438 CAMSAP2Q08AD1 1489 aa12.88□□□□□ -0.35
PPP4R1-225ENST00000583438 VWDEQ8N2E2 1590 aa12.87□□□□□ -0.35
PPP4R1-225ENST00000583438 SP7Q8TDD2 431 aaPredicted RBP12.87□□□□□ -0.35
PPP4R1-225ENST00000583438 CEP162Q5TB80 1403 aa12.87□□□□□ -0.35
PPP4R1-225ENST00000583438 A2ML1A8K2U0 1454 aa12.86□□□□□ -0.35
PPP4R1-225ENST00000583438 CEP152O94986 1710 aa12.86□□□□□ -0.35
PPP4R1-225ENST00000583438 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP12.86□□□□□ -0.351e-6■■■□□ 18.5
PPP4R1-225ENST00000583438 CFDP1Q9UEE9 299 aaPredicted RBP12.86□□□□□ -0.35
PPP4R1-225ENST00000583438 CFAP65Q6ZU64 1925 aaKnown RBP12.86□□□□□ -0.35
PPP4R1-225ENST00000583438 NCOA2Q15596 1464 aa12.85□□□□□ -0.35
PPP4R1-225ENST00000583438 MTUS2Q5JR59 1369 aa12.85□□□□□ -0.35
PPP4R1-225ENST00000583438 RNF17Q9BXT8 1623 aaKnown RBP12.85□□□□□ -0.35
PPP4R1-225ENST00000583438 KDM5DQ9BY66 1539 aa12.85□□□□□ -0.35
PPP4R1-225ENST00000583438 CADPS2Q86UW7 1296 aa12.85□□□□□ -0.35
PPP4R1-225ENST00000583438 XIRP1Q702N8 1843 aaKnown RBP12.84□□□□□ -0.35
PPP4R1-225ENST00000583438 FBXO31Q5XUX0 539 aaPredicted RBP12.84□□□□□ -0.35
PPP4R1-225ENST00000583438 GGT6Q6P531 493 aa12.84□□□□□ -0.35
PPP4R1-225ENST00000583438 PELP1Q8IZL8 1130 aaKnown RBP12.84□□□□□ -0.35
PPP4R1-225ENST00000583438 ARHGEF5Q12774 1597 aa12.84□□□□□ -0.35
PPP4R1-225ENST00000583438 ZC3H13Q5T200 1668 aaKnown RBP12.83□□□□□ -0.35
PPP4R1-225ENST00000583438 RTEL1-TNFRSF6BF6WH68 1400 aa12.83□□□□□ -0.36
PPP4R1-225ENST00000583438 DCBLD2Q96PD2 775 aa12.83□□□□□ -0.36
PPP4R1-225ENST00000583438 ESF1Q9H501 851 aaKnown RBP12.83□□□□□ -0.36
PPP4R1-225ENST00000583438 PZPP20742 1482 aa12.83□□□□□ -0.36
PPP4R1-225ENST00000583438 SOCS7O14512 581 aa12.82□□□□□ -0.36
PPP4R1-225ENST00000583438 CCDC141Q6ZP82 1450 aa12.82□□□□□ -0.36
PPP4R1-225ENST00000583438 DHX29Q7Z478 1369 aaKnown RBP12.81□□□□□ -0.36
PPP4R1-225ENST00000583438 MED1Q15648 1581 aaPredicted RBP12.81□□□□□ -0.36
PPP4R1-225ENST00000583438 DEPDC5O75140 1603 aa12.8□□□□□ -0.36
PPP4R1-225ENST00000583438 IQGAP1P46940 1657 aa12.8□□□□□ -0.36
PPP4R1-225ENST00000583438 UBR1Q8IWV7 1749 aa12.79□□□□□ -0.36
PPP4R1-225ENST00000583438 ABCC3O15438 1527 aa12.79□□□□□ -0.36
PPP4R1-225ENST00000583438 MAST1Q9Y2H9 1570 aa12.79□□□□□ -0.36
PPP4R1-225ENST00000583438 POTEIP0CG38 1075 aa12.79□□□□□ -0.36
PPP4R1-225ENST00000583438 IRX5P78411 483 aaPredicted RBP12.79□□□□□ -0.36
PPP4R1-225ENST00000583438 CROCC2H7BZ55 1655 aa12.79□□□□□ -0.36
PPP4R1-225ENST00000583438 FAM135AQ9P2D6 1515 aa12.78□□□□□ -0.36
PPP4R1-225ENST00000583438 IER5LQ5T953 404 aa12.78□□□□□ -0.36
PPP4R1-225ENST00000583438 DPY19L2Q6NUT2 758 aa12.78□□□□□ -0.36
PPP4R1-225ENST00000583438 PDCD7Q8N8D1 485 aaKnown RBP12.78□□□□□ -0.36
PPP4R1-225ENST00000583438 TNRQ92752 1358 aa12.78□□□□□ -0.36
PPP4R1-225ENST00000583438 SHANK2Q9UPX8 1470 aa12.77□□□□□ -0.37
PPP4R1-225ENST00000583438 EIF2AK4Q9P2K8 1649 aaKnown RBP12.77□□□□□ -0.37
PPP4R1-225ENST00000583438 UBAP1LF5GYI3 381 aa12.76□□□□□ -0.37
PPP4R1-225ENST00000583438 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP12.76□□□□□ -0.37
PPP4R1-225ENST00000583438 UGGT1Q9NYU2 1555 aa12.76□□□□□ -0.37
PPP4R1-225ENST00000583438 KIF3BO15066 747 aa12.75□□□□□ -0.37
PPP4R1-225ENST00000583438 MED14O60244 1454 aa12.75□□□□□ -0.37
PPP4R1-225ENST00000583438 CPS1P31327 1500 aa12.75□□□□□ -0.37
PPP4R1-225ENST00000583438 LRRC9Q6ZRR7 1453 aa12.74□□□□□ -0.37
PPP4R1-225ENST00000583438 ERVK-7P63135 1459 aa12.73□□□□□ -0.37
PPP4R1-225ENST00000583438 OCEL1Q9H607 264 aa12.73□□□□□ -0.37
PPP4R1-225ENST00000583438 MIA2Q96PC5 1412 aa12.72□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 65.2 ms