RNA–Protein interactions for RNA: ENST00000581711.1

SMCHD1-207, Transcript of structural maintenance of chromosomes flexible hinge domain containing 1, humanhuman

TSL 4

Gene SMCHD1, Length 546 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMCHD1-207ENST00000581711 RNF223E7ERA6 249 aa13.34□□□□□ -0.27
SMCHD1-207ENST00000581711 RBM46Q8TBY0 533 aaKnown RBP13.33□□□□□ -0.28
SMCHD1-207ENST00000581711 TMEM134Q9H6X4 195 aa13.33□□□□□ -0.28
SMCHD1-207ENST00000581711 TLL1O43897 1013 aa13.32□□□□□ -0.28
SMCHD1-207ENST00000581711 ZNF787Q6DD87 383 aa13.32□□□□□ -0.28
SMCHD1-207ENST00000581711 KCNV2Q8TDN2 545 aa13.32□□□□□ -0.28
SMCHD1-207ENST00000581711 ADGRG1Q9Y653 693 aa13.32□□□□□ -0.28
SMCHD1-207ENST00000581711 SLC19A1P41440 591 aa13.31□□□□□ -0.28
SMCHD1-207ENST00000581711 TRIM67Q6ZTA4 783 aa13.31□□□□□ -0.28
SMCHD1-207ENST00000581711 EMID1Q96A84 441 aaPredicted RBP13.31□□□□□ -0.28
SMCHD1-207ENST00000581711 ACTN4O43707 911 aaKnown RBP13.28□□□□□ -0.28
SMCHD1-207ENST00000581711 RCCD1A6NED2 376 aa13.27□□□□□ -0.29
SMCHD1-207ENST00000581711 FAM161AQ3B820 660 aa13.27□□□□□ -0.29
SMCHD1-207ENST00000581711 KMT5BQ4FZB7 885 aa13.27□□□□□ -0.29
SMCHD1-207ENST00000581711 CFHP08603 1231 aa13.26□□□□□ -0.29
SMCHD1-207ENST00000581711 ANKLE1Q8NAG6 615 aa13.26□□□□□ -0.29
SMCHD1-207ENST00000581711 TSHZ2Q9NRE2 1034 aa13.26□□□□□ -0.29
SMCHD1-207ENST00000581711 NUTM2FA1L443 756 aa13.25□□□□□ -0.29
SMCHD1-207ENST00000581711 S1PR4O95977 384 aa13.25□□□□□ -0.29
SMCHD1-207ENST00000581711 SPRYD7Q5W111 196 aa13.25□□□□□ -0.29
SMCHD1-207ENST00000581711 PPEF1O14829 653 aaPredicted RBP13.23□□□□□ -0.29
SMCHD1-207ENST00000581711 ZNF598Q86UK7 904 aaKnown RBP13.22□□□□□ -0.29
SMCHD1-207ENST00000581711 SLC10A3P09131 477 aa13.21□□□□□ -0.29
SMCHD1-207ENST00000581711 PRR20EP86478 221 aa13.2□□□□□ -0.3
SMCHD1-207ENST00000581711 PRR20CP86479 221 aa13.2□□□□□ -0.3
SMCHD1-207ENST00000581711 PRR20DP86480 221 aa13.2□□□□□ -0.3
SMCHD1-207ENST00000581711 PRR20BP86481 221 aa13.2□□□□□ -0.3
SMCHD1-207ENST00000581711 PRR20AP86496 221 aa13.2□□□□□ -0.3
SMCHD1-207ENST00000581711 PKDCCQ504Y2 493 aa13.2□□□□□ -0.3
SMCHD1-207ENST00000581711 LIAT1Q6ZQX7 453 aa13.2□□□□□ -0.3
SMCHD1-207ENST00000581711 ADH1BP00325 375 aa13.19□□□□□ -0.3
SMCHD1-207ENST00000581711 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.18□□□□□ -0.3
SMCHD1-207ENST00000581711 FCHSD2O94868 740 aa13.18□□□□□ -0.3
SMCHD1-207ENST00000581711 MYT1Q01538 1121 aa13.18□□□□□ -0.3
SMCHD1-207ENST00000581711 ZNF697Q5TEC3 545 aa13.18□□□□□ -0.3
SMCHD1-207ENST00000581711 ZNF775Q96BV0 537 aaPredicted RBP13.18□□□□□ -0.3
SMCHD1-207ENST00000581711 NR1I2O75469 434 aa13.17□□□□□ -0.3
SMCHD1-207ENST00000581711 DGAT1O75907 488 aa13.17□□□□□ -0.3
SMCHD1-207ENST00000581711 PXYLP1Q8TE99 480 aa13.14□□□□□ -0.31
SMCHD1-207ENST00000581711 SLC6A16Q9GZN6 736 aa13.14□□□□□ -0.31
SMCHD1-207ENST00000581711 TNFRSF10AO00220 468 aa13.13□□□□□ -0.31
SMCHD1-207ENST00000581711 GDF9O60383 454 aa13.12□□□□□ -0.31
SMCHD1-207ENST00000581711 OATP04181 439 aa13.12□□□□□ -0.31
SMCHD1-207ENST00000581711 PLA2G2CQ5R387 149 aa13.12□□□□□ -0.31
SMCHD1-207ENST00000581711 SEMA3EO15041 775 aa13.11□□□□□ -0.31
SMCHD1-207ENST00000581711 P3H3Q8IVL6 736 aa13.11□□□□□ -0.31
SMCHD1-207ENST00000581711 SCUBE3Q8IX30 993 aa13.11□□□□□ -0.31
SMCHD1-207ENST00000581711 FAM187AA6NFU0 413 aa13.1□□□□□ -0.31
SMCHD1-207ENST00000581711 PUS10Q3MIT2 529 aaKnown RBP13.09□□□□□ -0.31
SMCHD1-207ENST00000581711 METTL3Q86U44 580 aaKnown RBP13.08□□□□□ -0.32
SMCHD1-207ENST00000581711 POTECB2RU33 542 aa13.07□□□□□ -0.32
SMCHD1-207ENST00000581711 RSPH4AQ5TD94 716 aa13.06□□□□□ -0.32
SMCHD1-207ENST00000581711 SPSB2Q99619 263 aa13.06□□□□□ -0.32
SMCHD1-207ENST00000581711 HIC1Q14526 733 aa13.05□□□□□ -0.32
SMCHD1-207ENST00000581711 ST8SIA5O15466 376 aa13.01□□□□□ -0.33
SMCHD1-207ENST00000581711 PKD2L1Q9P0L9 805 aa13.01□□□□□ -0.33
SMCHD1-207ENST00000581711 FOXC1Q12948 553 aa13□□□□□ -0.33
SMCHD1-207ENST00000581711 RBM26Q5T8P6 1007 aaKnown RBP12.99□□□□□ -0.33
SMCHD1-207ENST00000581711 LMOD2Q6P5Q4 547 aa12.99□□□□□ -0.33
SMCHD1-207ENST00000581711 AAASQ9NRG9 546 aa12.99□□□□□ -0.33
SMCHD1-207ENST00000581711 FECHP22830 423 aa12.98□□□□□ -0.33
SMCHD1-207ENST00000581711 MORN1Q5T089 497 aa12.98□□□□□ -0.33
SMCHD1-207ENST00000581711 RDH13Q8NBN7 331 aa12.98□□□□□ -0.33
SMCHD1-207ENST00000581711 DAXXQ9UER7 740 aaPredicted RBP12.97□□□□□ -0.33
SMCHD1-207ENST00000581711 TESPA1A2RU30 521 aaPredicted RBP12.96□□□□□ -0.33
SMCHD1-207ENST00000581711 GNPATO15228 680 aa12.96□□□□□ -0.33
SMCHD1-207ENST00000581711 RPIAP49247 311 aa12.96□□□□□ -0.33
SMCHD1-207ENST00000581711 FUT2Q10981 343 aa12.96□□□□□ -0.33
SMCHD1-207ENST00000581711 THAP11Q96EK4 314 aa12.96□□□□□ -0.33
SMCHD1-207ENST00000581711 FCF1Q9Y324 198 aaKnown RBP12.95□□□□□ -0.34
SMCHD1-207ENST00000581711 DDX11L8A8MPP1 907 aa12.94□□□□□ -0.34
SMCHD1-207ENST00000581711 GPR37O15354 613 aa12.93□□□□□ -0.34
SMCHD1-207ENST00000581711 ATP6V1AP38606 617 aa12.93□□□□□ -0.34
SMCHD1-207ENST00000581711 NLRP7Q8WX94 980 aa12.93□□□□□ -0.34
SMCHD1-207ENST00000581711 FAM160A2Q8N612 972 aaPredicted RBP12.92□□□□□ -0.34
SMCHD1-207ENST00000581711 FMNL1O95466 1100 aaPredicted RBP12.91□□□□□ -0.34
SMCHD1-207ENST00000581711 CRIPAKQ8N1N5 446 aa12.91□□□□□ -0.34
SMCHD1-207ENST00000581711 TOR4AQ9NXH8 423 aa12.91□□□□□ -0.34
SMCHD1-207ENST00000581711 SLC27A5Q9Y2P5 690 aa12.91□□□□□ -0.34
SMCHD1-207ENST00000581711 CD2BP2O95400 341 aaKnown RBP12.9□□□□□ -0.34
SMCHD1-207ENST00000581711 SMYD5Q6GMV2 418 aa12.9□□□□□ -0.34
SMCHD1-207ENST00000581711 GCGRP47871 477 aa12.89□□□□□ -0.35
SMCHD1-207ENST00000581711 PRDM9Q9NQV7 894 aa12.89□□□□□ -0.35
SMCHD1-207ENST00000581711 AVPP01185 164 aa12.87□□□□□ -0.35
SMCHD1-207ENST00000581711 TREML4Q6UXN2 200 aa12.87□□□□□ -0.35
SMCHD1-207ENST00000581711 SULF1Q8IWU6 871 aa12.87□□□□□ -0.35
SMCHD1-207ENST00000581711 CYP4X1Q8N118 509 aa12.87□□□□□ -0.35
SMCHD1-207ENST00000581711 SALL2Q9Y467 1007 aaPredicted RBP12.87□□□□□ -0.35
SMCHD1-207ENST00000581711 PHOX2BQ99453 314 aa12.86□□□□□ -0.35
SMCHD1-207ENST00000581711 DACH1Q9UI36 760 aa12.86□□□□□ -0.35
SMCHD1-207ENST00000581711 LCE2AQ5TA79 106 aaPredicted RBP12.85□□□□□ -0.35
SMCHD1-207ENST00000581711 BRICD5Q6PL45 260 aa12.85□□□□□ -0.35
SMCHD1-207ENST00000581711 AXIN1O15169 862 aa12.82□□□□□ -0.36
SMCHD1-207ENST00000581711 MSS51Q4VC12 460 aa12.82□□□□□ -0.36
SMCHD1-207ENST00000581711 RNF19BQ6ZMZ0 732 aa12.82□□□□□ -0.36
SMCHD1-207ENST00000581711 CTC1Q2NKJ3 1217 aa12.81□□□□□ -0.36
SMCHD1-207ENST00000581711 GMPR2Q9P2T1 348 aaKnown RBP12.81□□□□□ -0.36
SMCHD1-207ENST00000581711 ZBTB24O43167 697 aaPredicted RBP12.8□□□□□ -0.36
SMCHD1-207ENST00000581711 TTC24A2A3L6 582 aaPredicted RBP12.78□□□□□ -0.36
SMCHD1-207ENST00000581711 SMCPP49901 116 aaPredicted RBP12.78□□□□□ -0.36
Retrieved 100 of 20,778 RNA–protein pairs in 12.7 ms