RNA–Protein interactions for RNA: ENST00000581662.1

CDK5RAP3-221, Transcript of CDK5 regulatory subunit associated protein 3, humanhuman

TSL 2

Gene CDK5RAP3, Length 557 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDK5RAP3-221ENST00000581662 UGGT1Q9NYU2 1555 aa13.3□□□□□ -0.28
CDK5RAP3-221ENST00000581662 THEMISQ8N1K5 641 aaPredicted RBP13.3□□□□□ -0.28
CDK5RAP3-221ENST00000581662 PREX2Q70Z35 1606 aa13.3□□□□□ -0.28
CDK5RAP3-221ENST00000581662 RXRBP28702 533 aa13.29□□□□□ -0.28
CDK5RAP3-221ENST00000581662 ATMINO43313 823 aaPredicted RBP13.28□□□□□ -0.28
CDK5RAP3-221ENST00000581662 FBXO31Q5XUX0 539 aaPredicted RBP13.28□□□□□ -0.28
CDK5RAP3-221ENST00000581662 GGT6Q6P531 493 aa13.28□□□□□ -0.28
CDK5RAP3-221ENST00000581662 ATP7AQ04656 1500 aa13.28□□□□□ -0.28
CDK5RAP3-221ENST00000581662 ASTLQ6HA08 431 aaPredicted RBP13.27□□□□□ -0.29
CDK5RAP3-221ENST00000581662 PELP1Q8IZL8 1130 aaKnown RBP13.27□□□□□ -0.29
CDK5RAP3-221ENST00000581662 RGS12O14924 1447 aa13.27□□□□□ -0.29
CDK5RAP3-221ENST00000581662 LRRC9Q6ZRR7 1453 aa13.27□□□□□ -0.29
CDK5RAP3-221ENST00000581662 INO80Q9ULG1 1556 aaPredicted RBP13.27□□□□□ -0.29
CDK5RAP3-221ENST00000581662 MAP3K1Q13233 1512 aa13.26□□□□□ -0.29
CDK5RAP3-221ENST00000581662 COL16A1Q07092 1604 aaPredicted RBP13.25□□□□□ -0.29
CDK5RAP3-221ENST00000581662 MIA2Q96PC5 1412 aa13.25□□□□□ -0.29
CDK5RAP3-221ENST00000581662 SPATA31A6Q5VVP1 1343 aa13.25□□□□□ -0.29
CDK5RAP3-221ENST00000581662 IFNLR1Q8IU57 520 aaPredicted RBP13.25□□□□□ -0.29
CDK5RAP3-221ENST00000581662 SGIP1Q9BQI5 828 aa13.25□□□□□ -0.29
CDK5RAP3-221ENST00000581662 SPAG9O60271 1321 aaKnown RBP13.24□□□□□ -0.29
CDK5RAP3-221ENST00000581662 PYGBP11216 843 aa13.24□□□□□ -0.29
CDK5RAP3-221ENST00000581662 GSE1Q14687 1217 aa13.24□□□□□ -0.29
CDK5RAP3-221ENST00000581662 TRPC6Q9Y210 931 aa13.24□□□□□ -0.29
CDK5RAP3-221ENST00000581662 CLIP1P30622 1438 aa13.23□□□□□ -0.29
CDK5RAP3-221ENST00000581662 FGD6Q6ZV73 1430 aa13.23□□□□□ -0.29
CDK5RAP3-221ENST00000581662 PHLPP1O60346 1717 aa13.23□□□□□ -0.29
CDK5RAP3-221ENST00000581662 TMEM94Q12767 1356 aa13.22□□□□□ -0.29
CDK5RAP3-221ENST00000581662 IFFO2Q5TF58 517 aa13.22□□□□□ -0.29
CDK5RAP3-221ENST00000581662 SPOCK2Q92563 424 aa13.22□□□□□ -0.29
CDK5RAP3-221ENST00000581662 BMP2KQ9NSY1 1161 aaPredicted RBP13.22□□□□□ -0.29
CDK5RAP3-221ENST00000581662 CDK11AQ9UQ88 783 aaPredicted RBP13.22□□□□□ -0.29
CDK5RAP3-221ENST00000581662 SYCP2Q9BX26 1530 aa13.22□□□□□ -0.29
CDK5RAP3-221ENST00000581662 ATN1P54259 1190 aaPredicted RBP13.21□□□□□ -0.29
CDK5RAP3-221ENST00000581662 SLC39A7Q92504 469 aa13.21□□□□□ -0.29
CDK5RAP3-221ENST00000581662 RBM33Q96EV2 1170 aaKnown RBP13.21□□□□□ -0.29
CDK5RAP3-221ENST00000581662 TIE1P35590 1138 aa13.2□□□□□ -0.3
CDK5RAP3-221ENST00000581662 IFNL1Q8IU54 200 aa13.2□□□□□ -0.3
CDK5RAP3-221ENST00000581662 LRP5O75197 1615 aa13.2□□□□□ -0.3
CDK5RAP3-221ENST00000581662 LRRIQ1Q96JM4 1722 aa13.19□□□□□ -0.3
CDK5RAP3-221ENST00000581662 SCAF11Q99590 1463 aaKnown RBP13.19□□□□□ -0.3
CDK5RAP3-221ENST00000581662 C7P10643 843 aa13.19□□□□□ -0.3
CDK5RAP3-221ENST00000581662 RANGAP1P46060 587 aaPredicted RBP13.19□□□□□ -0.3
CDK5RAP3-221ENST00000581662 MEX3CQ5U5Q3 659 aaKnown RBP13.19□□□□□ -0.3
CDK5RAP3-221ENST00000581662 METRNQ9UJH8 293 aa13.19□□□□□ -0.3
CDK5RAP3-221ENST00000581662 ATAD2Q6PL18 1390 aa13.17□□□□□ -0.3
CDK5RAP3-221ENST00000581662 CIZ1Q9ULV3 898 aaPredicted RBP13.16□□□□□ -0.3
CDK5RAP3-221ENST00000581662 ARHGAP23Q9P227 1491 aa13.16□□□□□ -0.3
CDK5RAP3-221ENST00000581662 SHPRHQ149N8 1683 aa13.15□□□□□ -0.3
CDK5RAP3-221ENST00000581662 TTLL13PA6NNM8 815 aa13.15□□□□□ -0.3
CDK5RAP3-221ENST00000581662 TIAM1Q13009 1591 aa13.15□□□□□ -0.3
CDK5RAP3-221ENST00000581662 ADGBQ8N7X0 1667 aa13.15□□□□□ -0.31
CDK5RAP3-221ENST00000581662 KIAA1107Q9UPP5 1409 aa13.14□□□□□ -0.31
CDK5RAP3-221ENST00000581662 AFF2P51816 1311 aa13.13□□□□□ -0.31
CDK5RAP3-221ENST00000581662 CDC42BPAQ5VT25 1732 aa13.13□□□□□ -0.31
CDK5RAP3-221ENST00000581662 EP400Q96L91 3159 aa13.13□□□□□ -0.31
CDK5RAP3-221ENST00000581662 SLIT1O75093 1534 aa13.13□□□□□ -0.31
CDK5RAP3-221ENST00000581662 PRDM15P57071 1507 aaPredicted RBP13.13□□□□□ -0.31
CDK5RAP3-221ENST00000581662 FMN1Q68DA7 1419 aa13.13□□□□□ -0.31
CDK5RAP3-221ENST00000581662 NCOA2Q15596 1464 aa13.12□□□□□ -0.31
CDK5RAP3-221ENST00000581662 NUTM2BA6NNL0 878 aaPredicted RBP13.12□□□□□ -0.31
CDK5RAP3-221ENST00000581662 NUTM2EB1AL46 878 aaPredicted RBP13.12□□□□□ -0.31
CDK5RAP3-221ENST00000581662 LTKP29376 864 aa13.12□□□□□ -0.31
CDK5RAP3-221ENST00000581662 RBM6P78332 1123 aaKnown RBP13.12□□□□□ -0.31
CDK5RAP3-221ENST00000581662 NUTM2DQ5VT03 806 aaPredicted RBP13.12□□□□□ -0.31
CDK5RAP3-221ENST00000581662 NUTM2AQ8IVF1 878 aaPredicted RBP13.12□□□□□ -0.31
CDK5RAP3-221ENST00000581662 TMEM106CQ9BVX2 250 aa13.12□□□□□ -0.31
CDK5RAP3-221ENST00000581662 SLAIN2Q9P270 581 aa13.12□□□□□ -0.31
CDK5RAP3-221ENST00000581662 AHDC1Q5TGY3 1603 aaPredicted RBP13.11□□□□□ -0.31
CDK5RAP3-221ENST00000581662 HNRNPMP52272 730 aaKnown RBP eCLIP13.11□□□□□ -0.31
CDK5RAP3-221ENST00000581662 PCDHB8Q9UN66 801 aa13.11□□□□□ -0.31
CDK5RAP3-221ENST00000581662 ABCC3O15438 1527 aa13.1□□□□□ -0.31
CDK5RAP3-221ENST00000581662 DIP2AQ14689 1571 aa13.1□□□□□ -0.31
CDK5RAP3-221ENST00000581662 NKTRP30414 1462 aaKnown RBP13.1□□□□□ -0.31
CDK5RAP3-221ENST00000581662 DHX29Q7Z478 1369 aaKnown RBP13.09□□□□□ -0.31
CDK5RAP3-221ENST00000581662 TRIM35Q9UPQ4 493 aa13.09□□□□□ -0.31
CDK5RAP3-221ENST00000581662 MSH6P52701 1360 aa13.08□□□□□ -0.31
CDK5RAP3-221ENST00000581662 UBR1Q8IWV7 1749 aa13.08□□□□□ -0.32
CDK5RAP3-221ENST00000581662 NWD1Q149M9 1564 aa13.08□□□□□ -0.32
CDK5RAP3-221ENST00000581662 POTEB2H3BUK9 544 aa13.08□□□□□ -0.32
CDK5RAP3-221ENST00000581662 KCNA6P17658 529 aa13.08□□□□□ -0.32
CDK5RAP3-221ENST00000581662 PLEKHH2Q8IVE3 1493 aa13.08□□□□□ -0.32
CDK5RAP3-221ENST00000581662 SEC24BO95487 1268 aa13.07□□□□□ -0.32
CDK5RAP3-221ENST00000581662 ATP1B4Q9UN42 357 aaPredicted RBP13.07□□□□□ -0.32
CDK5RAP3-221ENST00000581662 ERVK-7P63135 1459 aa13.07□□□□□ -0.32
CDK5RAP3-221ENST00000581662 GPATCH8Q9UKJ3 1502 aaKnown RBP13.07□□□□□ -0.32
CDK5RAP3-221ENST00000581662 NHSL1Q5SYE7 1610 aa13.06□□□□□ -0.32
CDK5RAP3-221ENST00000581662 ZNF777Q9ULD5 760 aaPredicted RBP13.06□□□□□ -0.32
CDK5RAP3-221ENST00000581662 WASHC2CQ9Y4E1 1318 aa13.06□□□□□ -0.32
CDK5RAP3-221ENST00000581662 TXNDC2Q86VQ3 553 aa13.05□□□□□ -0.32
CDK5RAP3-221ENST00000581662 PROSER2Q86WR7 435 aaPredicted RBP13.05□□□□□ -0.32
CDK5RAP3-221ENST00000581662 QTRT2Q9H974 415 aaKnown RBP13.05□□□□□ -0.32
CDK5RAP3-221ENST00000581662 CHRM1P11229 460 aaPredicted RBP13.04□□□□□ -0.32
CDK5RAP3-221ENST00000581662 ZNF467Q7Z7K2 595 aaPredicted RBP13.04□□□□□ -0.32
CDK5RAP3-221ENST00000581662 CCDC125Q86Z20 511 aa13.04□□□□□ -0.32
CDK5RAP3-221ENST00000581662 RTEL1-TNFRSF6BF6WH68 1400 aa13.04□□□□□ -0.32
CDK5RAP3-221ENST00000581662 CAMSAP2Q08AD1 1489 aa13.04□□□□□ -0.32
CDK5RAP3-221ENST00000581662 KDM5AP29375 1690 aaKnown RBP13.03□□□□□ -0.32
CDK5RAP3-221ENST00000581662 KIF3BO15066 747 aa13.03□□□□□ -0.32
CDK5RAP3-221ENST00000581662 TET3O43151 1660 aa13.01□□□□□ -0.33
CDK5RAP3-221ENST00000581662 ARHGAP35Q9NRY4 1499 aa13□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 49.3 ms