RNA–Protein interactions for RNA: ENST00000580569.1

RFFL-207, Transcript of ring finger and FYVE like domain containing E3 ubiquitin protein ligase, humanhuman

TSL 5

Gene RFFL, Length 570 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RFFL-207ENST00000580569 KLHL34Q8N239 644 aa11.52□□□□□ -0.57
RFFL-207ENST00000580569 SPOCK2Q92563 424 aa11.52□□□□□ -0.57
RFFL-207ENST00000580569 ROCK1Q13464 1354 aa11.52□□□□□ -0.57
RFFL-207ENST00000580569 XIRP1Q702N8 1843 aaKnown RBP11.51□□□□□ -0.57
RFFL-207ENST00000580569 UGGT1Q9NYU2 1555 aa11.51□□□□□ -0.57
RFFL-207ENST00000580569 ANKLE2Q86XL3 938 aa11.51□□□□□ -0.57
RFFL-207ENST00000580569 DHX29Q7Z478 1369 aaKnown RBP11.51□□□□□ -0.57
RFFL-207ENST00000580569 NPHP4O75161 1426 aaPredicted RBP11.51□□□□□ -0.57
RFFL-207ENST00000580569 MBD5Q9P267 1494 aa11.51□□□□□ -0.57
RFFL-207ENST00000580569 LRRC7Q96NW7 1537 aa11.5□□□□□ -0.57
RFFL-207ENST00000580569 ZC3H13Q5T200 1668 aaKnown RBP11.5□□□□□ -0.57
RFFL-207ENST00000580569 THEMISQ8N1K5 641 aaPredicted RBP11.5□□□□□ -0.57
RFFL-207ENST00000580569 CFDP1Q9UEE9 299 aaPredicted RBP11.5□□□□□ -0.57
RFFL-207ENST00000580569 SPINK5Q9NQ38 1064 aaPredicted RBP11.49□□□□□ -0.57
RFFL-207ENST00000580569 ADGRL2O95490 1459 aa11.49□□□□□ -0.57
RFFL-207ENST00000580569 FBXO31Q5XUX0 539 aaPredicted RBP11.48□□□□□ -0.57
RFFL-207ENST00000580569 RGS17Q9UGC6 210 aaPredicted RBP11.48□□□□□ -0.57
RFFL-207ENST00000580569 ARHGEF5Q12774 1597 aa11.47□□□□□ -0.57
RFFL-207ENST00000580569 ZNF644Q9H582 1327 aaPredicted RBP11.47□□□□□ -0.57
RFFL-207ENST00000580569 CFAP65Q6ZU64 1925 aaKnown RBP11.47□□□□□ -0.57
RFFL-207ENST00000580569 TIMELESSQ9UNS1 1208 aa11.45□□□□□ -0.58
RFFL-207ENST00000580569 UBR1Q8IWV7 1749 aa11.45□□□□□ -0.58
RFFL-207ENST00000580569 DIEXFQ68CQ4 756 aaKnown RBP11.44□□□□□ -0.58
RFFL-207ENST00000580569 RRP7BPQ9NSQ0 103 aa11.44□□□□□ -0.58
RFFL-207ENST00000580569 WASHC2CQ9Y4E1 1318 aa11.43□□□□□ -0.58
RFFL-207ENST00000580569 KIF3BO15066 747 aa11.43□□□□□ -0.58
RFFL-207ENST00000580569 RGL2O15211 777 aa11.43□□□□□ -0.58
RFFL-207ENST00000580569 SIN3AQ96ST3 1273 aa11.43□□□□□ -0.58
RFFL-207ENST00000580569 TSHZ2Q9NRE2 1034 aa11.43□□□□□ -0.58
RFFL-207ENST00000580569 CHIC2Q9UKJ5 165 aa11.42□□□□□ -0.58
RFFL-207ENST00000580569 CCDC141Q6ZP82 1450 aa11.42□□□□□ -0.58
RFFL-207ENST00000580569 RSPH4AQ5TD94 716 aa11.41□□□□□ -0.58
RFFL-207ENST00000580569 FAM135BQ49AJ0 1406 aa11.41□□□□□ -0.58
RFFL-207ENST00000580569 MAST1Q9Y2H9 1570 aa11.41□□□□□ -0.58
RFFL-207ENST00000580569 ACIN1Q9UKV3 1341 aaKnown RBP11.4□□□□□ -0.58
RFFL-207ENST00000580569 EIF2AK4Q9P2K8 1649 aaKnown RBP11.4□□□□□ -0.58
RFFL-207ENST00000580569 SPRYD3Q8NCJ5 442 aa11.4□□□□□ -0.58
RFFL-207ENST00000580569 ABCC3O15438 1527 aa11.39□□□□□ -0.59
RFFL-207ENST00000580569 SLIT1O75093 1534 aa11.39□□□□□ -0.59
RFFL-207ENST00000580569 ERVK-7P63135 1459 aa11.38□□□□□ -0.59
RFFL-207ENST00000580569 SCAF11Q99590 1463 aaKnown RBP11.38□□□□□ -0.59
RFFL-207ENST00000580569 ARHGAP23Q9P227 1491 aa11.38□□□□□ -0.59
RFFL-207ENST00000580569 CAPN15O75808 1086 aa11.38□□□□□ -0.59
RFFL-207ENST00000580569 SETD1AO15047 1707 aaKnown RBP11.38□□□□□ -0.59
RFFL-207ENST00000580569 CEP152O94986 1710 aa11.38□□□□□ -0.59
RFFL-207ENST00000580569 KDM5AP29375 1690 aaKnown RBP11.37□□□□□ -0.59
RFFL-207ENST00000580569 ROBO1Q9Y6N7 1651 aa11.37□□□□□ -0.59
RFFL-207ENST00000580569 PPP1R15AO75807 674 aaPredicted RBP11.37□□□□□ -0.59
RFFL-207ENST00000580569 POTEAQ6S8J7 498 aa11.37□□□□□ -0.59
RFFL-207ENST00000580569 MROH1Q8NDA8 1641 aa11.37□□□□□ -0.59
RFFL-207ENST00000580569 MPHOSPH9Q99550 1183 aa11.35□□□□□ -0.59
RFFL-207ENST00000580569 ANKRD30BQ9BXX2 1392 aa11.34□□□□□ -0.59
RFFL-207ENST00000580569 ANKRD30AQ9BXX3 1397 aa11.34□□□□□ -0.59
RFFL-207ENST00000580569 NEUROD1Q13562 356 aa11.34□□□□□ -0.59
RFFL-207ENST00000580569 ZBTB12Q9Y330 459 aaPredicted RBP11.34□□□□□ -0.59
RFFL-207ENST00000580569 PLCD3Q8N3E9 789 aa11.33□□□□□ -0.6
RFFL-207ENST00000580569 LTKP29376 864 aa11.32□□□□□ -0.6
RFFL-207ENST00000580569 STAG3Q9UJ98 1225 aa11.32□□□□□ -0.6
RFFL-207ENST00000580569 ARHGAP31Q2M1Z3 1444 aa11.32□□□□□ -0.6
RFFL-207ENST00000580569 UNC13BO14795 1591 aa11.32□□□□□ -0.6
RFFL-207ENST00000580569 PHLPP1O60346 1717 aa11.32□□□□□ -0.6
RFFL-207ENST00000580569 RPRD2Q5VT52 1461 aaKnown RBP11.32□□□□□ -0.6
RFFL-207ENST00000580569 ANKRD50Q9ULJ7 1429 aa11.31□□□□□ -0.6
RFFL-207ENST00000580569 PIK3C2BO00750 1634 aa11.31□□□□□ -0.6
RFFL-207ENST00000580569 TET3O43151 1660 aa11.3□□□□□ -0.6
RFFL-207ENST00000580569 TSPY4P0CV99 314 aa11.3□□□□□ -0.6
RFFL-207ENST00000580569 TSPY10P0CW01 314 aa11.3□□□□□ -0.6
RFFL-207ENST00000580569 TXNDC2Q86VQ3 553 aa11.3□□□□□ -0.6
RFFL-207ENST00000580569 TRIM52Q96A61 297 aa11.3□□□□□ -0.6
RFFL-207ENST00000580569 TONSLQ96HA7 1378 aa11.29□□□□□ -0.6
RFFL-207ENST00000580569 NWD1Q149M9 1564 aa11.29□□□□□ -0.6
RFFL-207ENST00000580569 CHGAP10645 457 aaKnown RBP11.29□□□□□ -0.6
RFFL-207ENST00000580569 PRDM15P57071 1507 aaPredicted RBP11.29□□□□□ -0.6
RFFL-207ENST00000580569 TMEM94Q12767 1356 aa11.28□□□□□ -0.6
RFFL-207ENST00000580569 NKTRP30414 1462 aaKnown RBP11.28□□□□□ -0.6
RFFL-207ENST00000580569 EID1Q9Y6B2 187 aa11.28□□□□□ -0.6
RFFL-207ENST00000580569 CHD2O14647 1828 aaKnown RBP11.28□□□□□ -0.6
RFFL-207ENST00000580569 TMEM2Q9UHN6 1383 aa11.28□□□□□ -0.6
RFFL-207ENST00000580569 DUOX2Q9NRD8 1548 aa11.27□□□□□ -0.61
RFFL-207ENST00000580569 ABCB7O75027 752 aa11.27□□□□□ -0.61
RFFL-207ENST00000580569 KCNA6P17658 529 aa11.27□□□□□ -0.61
RFFL-207ENST00000580569 COL16A1Q07092 1604 aaPredicted RBP11.27□□□□□ -0.61
RFFL-207ENST00000580569 IQGAP3Q86VI3 1631 aa11.27□□□□□ -0.61
RFFL-207ENST00000580569 KIF15Q9NS87 1388 aa11.27□□□□□ -0.61
RFFL-207ENST00000580569 MIER1Q8N108 512 aa11.26□□□□□ -0.61
RFFL-207ENST00000580569 JCADQ9P266 1359 aa11.26□□□□□ -0.61
RFFL-207ENST00000580569 SRCAPQ6ZRS2 3230 aa11.26□□□□□ -0.61
RFFL-207ENST00000580569 EFCAB6Q5THR3 1501 aa11.25□□□□□ -0.61
RFFL-207ENST00000580569 SHPRHQ149N8 1683 aa11.25□□□□□ -0.61
RFFL-207ENST00000580569 NBR1Q14596 966 aa11.25□□□□□ -0.61
RFFL-207ENST00000580569 ZNF692Q9BU19 519 aaPredicted RBP11.25□□□□□ -0.61
RFFL-207ENST00000580569 UPF1Q92900 1129 aaKnown RBP eCLIP11.24□□□□□ -0.61
RFFL-207ENST00000580569 CIZ1Q9ULV3 898 aaPredicted RBP11.24□□□□□ -0.61
RFFL-207ENST00000580569 MSH6P52701 1360 aa11.22□□□□□ -0.61
RFFL-207ENST00000580569 PROSER2Q86WR7 435 aaPredicted RBP11.22□□□□□ -0.61
RFFL-207ENST00000580569 MYO5BQ9ULV0 1848 aa11.21□□□□□ -0.61
RFFL-207ENST00000580569 LMTK2Q8IWU2 1503 aa11.21□□□□□ -0.61
RFFL-207ENST00000580569 CDK12Q9NYV4 1490 aaPredicted RBP11.21□□□□□ -0.61
RFFL-207ENST00000580569 ERBINQ96RT1 1412 aa11.21□□□□□ -0.61
RFFL-207ENST00000580569 SPATA31A6Q5VVP1 1343 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms