RNA–Protein interactions for RNA: ENST00000577001.1

PRPF8-216, Transcript of pre-mRNA processing factor 8, human

TSL 5

Gene PRPF8, Length 3,274 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PRPF8-216	ENST00000577001	SEC24B	O95487	1268 aa		19.27	■□□□□ 0.68
PRPF8-216	ENST00000577001	ITSN2	Q9NZM3	1697 aa		19.27	■□□□□ 0.68
PRPF8-216	ENST00000577001	ANO8	Q9HCE9	1232 aa	Predicted RBP	19.27	■□□□□ 0.68
PRPF8-216	ENST00000577001	MORC1	Q86VD1	984 aa		19.27	■□□□□ 0.67
PRPF8-216	ENST00000577001	ARHGEF12	Q9NZN5	1544 aa		19.27	■□□□□ 0.67
PRPF8-216	ENST00000577001	SAMD9L	Q8IVG5	1584 aa		19.27	■□□□□ 0.67
PRPF8-216	ENST00000577001	U2SURP	O15042	1029 aa	Known RBP	19.26	■□□□□ 0.67
PRPF8-216	ENST00000577001	SHROOM2	Q13796	1616 aa		19.26	■□□□□ 0.67
PRPF8-216	ENST00000577001	SCAPER	Q9BY12	1400 aa		19.25	■□□□□ 0.67
PRPF8-216	ENST00000577001	ADCY10	Q96PN6	1610 aa		19.24	■□□□□ 0.67
PRPF8-216	ENST00000577001	FRAT2	O75474	233 aa	Predicted RBP	19.24	■□□□□ 0.67
PRPF8-216	ENST00000577001	ADGB	Q8N7X0	1667 aa		19.23	■□□□□ 0.67
PRPF8-216	ENST00000577001	KDM5D	Q9BY66	1539 aa		19.22	■□□□□ 0.67
PRPF8-216	ENST00000577001	CFAP65	Q6ZU64	1925 aa	Known RBP	19.22	■□□□□ 0.67
PRPF8-216	ENST00000577001	SLFN5	Q08AF3	891 aa		19.22	■□□□□ 0.67
PRPF8-216	ENST00000577001	RSPH4A	Q5TD94	716 aa		19.22	■□□□□ 0.67
PRPF8-216	ENST00000577001	TSR2	Q969E8	191 aa	Known RBP	19.22	■□□□□ 0.67
PRPF8-216	ENST00000577001	CABP2	Q9NPB3	220 aa		19.22	■□□□□ 0.67
PRPF8-216	ENST00000577001	NFKBIB	Q15653	356 aa		19.22	■□□□□ 0.67
PRPF8-216	ENST00000577001	PLPPR3	Q6T4P5	718 aa		19.21	■□□□□ 0.67
PRPF8-216	ENST00000577001	TTC37	Q6PGP7	1564 aa		19.21	■□□□□ 0.67
PRPF8-216	ENST00000577001	U2AF1L5	P0DN76	240 aa	Predicted RBP	19.2	■□□□□ 0.66
PRPF8-216	ENST00000577001	U2AF1	Q01081	240 aa	Known RBP eCLIP	19.2	■□□□□ 0.66
PRPF8-216	ENST00000577001	UGGT1	Q9NYU2	1555 aa		19.2	■□□□□ 0.66
PRPF8-216	ENST00000577001	MTHFS	P49914	203 aa		19.19	■□□□□ 0.66
PRPF8-216	ENST00000577001	COL17A1	Q9UMD9	1497 aa	Predicted RBP	19.19	■□□□□ 0.66
PRPF8-216	ENST00000577001	RLBP1	P12271	317 aa		19.18	■□□□□ 0.66
PRPF8-216	ENST00000577001	GOLGA6L2	Q8N9W4	650 aa	Predicted RBP	19.18	■□□□□ 0.66
PRPF8-216	ENST00000577001	C8orf34	Q49A92	452 aa		19.17	■□□□□ 0.66
PRPF8-216	ENST00000577001	GGNBP2	Q9H3C7	697 aa		19.17	■□□□□ 0.66
PRPF8-216	ENST00000577001	TCP11L2	Q8N4U5	519 aa		19.17	■□□□□ 0.66
PRPF8-216	ENST00000577001	CLASP1	Q7Z460	1538 aa		19.16	■□□□□ 0.66
PRPF8-216	ENST00000577001	ELL2	O00472	640 aa	Predicted RBP	19.15	■□□□□ 0.66
PRPF8-216	ENST00000577001	GEMIN5	Q8TEQ6	1508 aa	Known RBP eCLIP	19.15	■□□□□ 0.66	2e-6	■□□□□ 8.3
PRPF8-216	ENST00000577001	RAPGEF3	O95398	923 aa		19.15	■□□□□ 0.66
PRPF8-216	ENST00000577001	FAM161A	Q3B820	660 aa		19.15	■□□□□ 0.66
PRPF8-216	ENST00000577001	CENPQ	Q7L2Z9	268 aa	Predicted RBP	19.15	■□□□□ 0.66
PRPF8-216	ENST00000577001	CENPJ	Q9HC77	1338 aa	Predicted RBP	19.14	■□□□□ 0.66
PRPF8-216	ENST00000577001	CROCC2	H7BZ55	1655 aa		19.14	■□□□□ 0.65
PRPF8-216	ENST00000577001	WWC1	Q8IX03	1113 aa		19.13	■□□□□ 0.65
PRPF8-216	ENST00000577001	CDC42BPB	Q9Y5S2	1711 aa		19.13	■□□□□ 0.65
PRPF8-216	ENST00000577001	SRPK2	P78362	688 aa	Known RBP	19.12	■□□□□ 0.65
PRPF8-216	ENST00000577001	CDCA8	Q53HL2	280 aa		19.12	■□□□□ 0.65
PRPF8-216	ENST00000577001	GZF1	Q9H116	711 aa	Predicted RBP	19.12	■□□□□ 0.65
PRPF8-216	ENST00000577001	MS4A1	P11836	297 aa		19.12	■□□□□ 0.65
PRPF8-216	ENST00000577001	MINK1	Q8N4C8	1332 aa	Predicted RBP	19.11	■□□□□ 0.65
PRPF8-216	ENST00000577001	WDR7	Q9Y4E6	1490 aa		19.1	■□□□□ 0.65
PRPF8-216	ENST00000577001	MLEC	Q14165	292 aa		19.1	■□□□□ 0.65
PRPF8-216	ENST00000577001	PCDHB15	Q9Y5E8	787 aa		19.1	■□□□□ 0.65
PRPF8-216	ENST00000577001	KDM2B	Q8NHM5	1336 aa		19.1	■□□□□ 0.65
PRPF8-216	ENST00000577001	SHANK2	Q9UPX8	1470 aa		19.1	■□□□□ 0.65
PRPF8-216	ENST00000577001	ABCC2	Q92887	1545 aa		19.1	■□□□□ 0.65
PRPF8-216	ENST00000577001	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	19.1	■□□□□ 0.65
PRPF8-216	ENST00000577001	POLR1A	O95602	1720 aa	Predicted RBP	19.09	■□□□□ 0.65
PRPF8-216	ENST00000577001	EIF5B	O60841	1220 aa	Known RBP	19.09	■□□□□ 0.65
PRPF8-216	ENST00000577001	SOX12	O15370	315 aa		19.08	■□□□□ 0.65
PRPF8-216	ENST00000577001	TRPM1	Q7Z4N2	1603 aa		19.08	■□□□□ 0.65
PRPF8-216	ENST00000577001	NUTM2F	A1L443	756 aa		19.08	■□□□□ 0.64
PRPF8-216	ENST00000577001	GPRASP1	Q5JY77	1395 aa		19.07	■□□□□ 0.64
PRPF8-216	ENST00000577001	FOXD4L1	Q9NU39	408 aa		19.07	■□□□□ 0.64
PRPF8-216	ENST00000577001	WASHC2C	Q9Y4E1	1318 aa		19.07	■□□□□ 0.64
PRPF8-216	ENST00000577001	THUMPD2	Q9BTF0	503 aa	Known RBP	19.06	■□□□□ 0.64
PRPF8-216	ENST00000577001		E9PSI1	815 aa		19.06	■□□□□ 0.64
PRPF8-216	ENST00000577001	DDRGK1	Q96HY6	314 aa		19.06	■□□□□ 0.64
PRPF8-216	ENST00000577001	BLM	P54132	1417 aa	Predicted RBP	19.06	■□□□□ 0.64
PRPF8-216	ENST00000577001	NSD3	Q9BZ95	1437 aa		19.05	■□□□□ 0.64
PRPF8-216	ENST00000577001	MFAP1	P55081	439 aa	Known RBP	19.05	■□□□□ 0.64
PRPF8-216	ENST00000577001	KANK1	Q14678	1352 aa		19.04	■□□□□ 0.64
PRPF8-216	ENST00000577001	PLEKHG5	O94827	1062 aa		19.04	■□□□□ 0.64
PRPF8-216	ENST00000577001	FTSJ3	Q8IY81	847 aa	Known RBP	19.04	■□□□□ 0.64
PRPF8-216	ENST00000577001	ZNF521	Q96K83	1311 aa		19.03	■□□□□ 0.64
PRPF8-216	ENST00000577001	POGK	Q9P215	609 aa		19.03	■□□□□ 0.64
PRPF8-216	ENST00000577001	GSE1	Q14687	1217 aa		19.03	■□□□□ 0.64
PRPF8-216	ENST00000577001	ITPRIP	Q8IWB1	547 aa		19.03	■□□□□ 0.64
PRPF8-216	ENST00000577001	PDZRN3	Q9UPQ7	1066 aa		19.03	■□□□□ 0.64
PRPF8-216	ENST00000577001	NOS1	P29475	1434 aa		19.02	■□□□□ 0.64
PRPF8-216	ENST00000577001	C1orf115	Q9H7X2	142 aa		19.02	■□□□□ 0.64
PRPF8-216	ENST00000577001	PLCH2	O75038	1416 aa		19.01	■□□□□ 0.63
PRPF8-216	ENST00000577001	HMOX1	P09601	288 aa		19.01	■□□□□ 0.63
PRPF8-216	ENST00000577001	PREX2	Q70Z35	1606 aa		19.01	■□□□□ 0.63
PRPF8-216	ENST00000577001	EXOSC9	Q06265	439 aa	Known RBP	19.01	■□□□□ 0.63
PRPF8-216	ENST00000577001	SMC4	Q9NTJ3	1288 aa		19.01	■□□□□ 0.63
PRPF8-216	ENST00000577001	ZCCHC11	Q5TAX3	1644 aa	Known RBP	19.01	■□□□□ 0.63
PRPF8-216	ENST00000577001	NPM1	P06748	294 aa	Known RBP eCLIP	19	■□□□□ 0.63
PRPF8-216	ENST00000577001	RARS	P54136	660 aa	Known RBP	19	■□□□□ 0.63
PRPF8-216	ENST00000577001	STAG3	Q9UJ98	1225 aa		19	■□□□□ 0.63
PRPF8-216	ENST00000577001	ZMYM4	Q5VZL5	1548 aa		19	■□□□□ 0.63
PRPF8-216	ENST00000577001	ATP10A	O60312	1499 aa		18.99	■□□□□ 0.63
PRPF8-216	ENST00000577001	APBB1	O00213	710 aa		18.99	■□□□□ 0.63
PRPF8-216	ENST00000577001	SCAF11	Q99590	1463 aa	Known RBP	18.99	■□□□□ 0.63
PRPF8-216	ENST00000577001	PRDM15	P57071	1507 aa	Predicted RBP	18.98	■□□□□ 0.63
PRPF8-216	ENST00000577001	FBXO31	Q5XUX0	539 aa	Predicted RBP	18.96	■□□□□ 0.63
PRPF8-216	ENST00000577001	RUNDC1	Q96C34	613 aa		18.96	■□□□□ 0.63
PRPF8-216	ENST00000577001	ARHGEF5	Q12774	1597 aa		18.95	■□□□□ 0.62
PRPF8-216	ENST00000577001	UHRF1BP1L	A0JNW5	1464 aa		18.94	■□□□□ 0.62
PRPF8-216	ENST00000577001	EIF3A	Q14152	1382 aa	Known RBP	18.94	■□□□□ 0.62
PRPF8-216	ENST00000577001	ASXL1	Q8IXJ9	1541 aa		18.94	■□□□□ 0.62
PRPF8-216	ENST00000577001	NCKAP5L	Q9HCH0	1330 aa		18.94	■□□□□ 0.62
PRPF8-216	ENST00000577001	NKTR	P30414	1462 aa	Known RBP	18.94	■□□□□ 0.62
PRPF8-216	ENST00000577001	CFAP53	Q96M91	514 aa		18.94	■□□□□ 0.62

Retrieved 100 of 20,778 RNA–protein pairs in 7.4 ms