RNA–Protein interactions for RNA: ENST00000568539.1

SF3B3-212, Transcript of splicing factor 3b subunit 3, humanhuman

TSL 2

Gene SF3B3, Length 555 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3B3-212ENST00000568539 CLTCL1P53675 1640 aa12.31□□□□□ -0.44
SF3B3-212ENST00000568539 NLRP1Q9C000 1473 aa12.31□□□□□ -0.44
SF3B3-212ENST00000568539 SPATA31E1Q6ZUB1 1445 aa12.28□□□□□ -0.44
SF3B3-212ENST00000568539 NEUROD1Q13562 356 aa12.28□□□□□ -0.44
SF3B3-212ENST00000568539 MYO3AQ8NEV4 1616 aa12.27□□□□□ -0.44
SF3B3-212ENST00000568539 A2ML1A8K2U0 1454 aa12.27□□□□□ -0.45
SF3B3-212ENST00000568539 ADGRB3O60242 1522 aa12.27□□□□□ -0.45
SF3B3-212ENST00000568539 CHGAP10645 457 aaKnown RBP12.26□□□□□ -0.45
SF3B3-212ENST00000568539 ATF5Q9Y2D1 282 aaPredicted RBP12.26□□□□□ -0.45
SF3B3-212ENST00000568539 UHRF1BP1Q6BDS2 1440 aa12.26□□□□□ -0.45
SF3B3-212ENST00000568539 NEURL4Q96JN8 1562 aa12.26□□□□□ -0.45
SF3B3-212ENST00000568539 SAMD1Q6SPF0 538 aaPredicted RBP12.25□□□□□ -0.45
SF3B3-212ENST00000568539 CEP170BQ9Y4F5 1589 aaPredicted RBP12.25□□□□□ -0.45
SF3B3-212ENST00000568539 TMEM131LA2VDJ0 1609 aa12.25□□□□□ -0.45
SF3B3-212ENST00000568539 RGL3Q3MIN7 710 aa12.24□□□□□ -0.45
SF3B3-212ENST00000568539 STAG3Q9UJ98 1225 aa12.24□□□□□ -0.45
SF3B3-212ENST00000568539 STRCQ7RTU9 1775 aa12.23□□□□□ -0.45
SF3B3-212ENST00000568539 TONSLQ96HA7 1378 aa12.22□□□□□ -0.45
SF3B3-212ENST00000568539 L3MBTL2Q969R5 705 aa12.22□□□□□ -0.45
SF3B3-212ENST00000568539 TIMELESSQ9UNS1 1208 aa12.22□□□□□ -0.45
SF3B3-212ENST00000568539 KDM5AP29375 1690 aaKnown RBP12.22□□□□□ -0.45
SF3B3-212ENST00000568539 ZNF142P52746 1687 aaPredicted RBP12.22□□□□□ -0.45
SF3B3-212ENST00000568539 TMEM2Q9UHN6 1383 aa12.21□□□□□ -0.45
SF3B3-212ENST00000568539 RPGRIP1LQ68CZ1 1315 aa12.21□□□□□ -0.45
SF3B3-212ENST00000568539 ZNF326Q5BKZ1 582 aaKnown RBP12.21□□□□□ -0.45
SF3B3-212ENST00000568539 THEMISQ8N1K5 641 aaPredicted RBP12.21□□□□□ -0.45
SF3B3-212ENST00000568539 UBR1Q8IWV7 1749 aa12.2□□□□□ -0.46
SF3B3-212ENST00000568539 ARHGAP23Q9P227 1491 aa12.2□□□□□ -0.46
SF3B3-212ENST00000568539 ZFYVE9O95405 1425 aa12.2□□□□□ -0.46
SF3B3-212ENST00000568539 CFAP65Q6ZU64 1925 aaKnown RBP12.19□□□□□ -0.46
SF3B3-212ENST00000568539 DCAF11Q8TEB1 546 aa12.19□□□□□ -0.46
SF3B3-212ENST00000568539 SLIT1O75093 1534 aa12.19□□□□□ -0.46
SF3B3-212ENST00000568539 NEXMIFQ5QGS0 1516 aa12.19□□□□□ -0.46
SF3B3-212ENST00000568539 RIMS2Q9UQ26 1411 aa12.19□□□□□ -0.46
SF3B3-212ENST00000568539 STAC3Q96MF2 364 aa12.18□□□□□ -0.46
SF3B3-212ENST00000568539 KIF1BO60333 1816 aa12.18□□□□□ -0.46
SF3B3-212ENST00000568539 MYOM2P54296 1465 aa12.17□□□□□ -0.46
SF3B3-212ENST00000568539 VGFO15240 615 aaPredicted RBP12.16□□□□□ -0.46
SF3B3-212ENST00000568539 LTKP29376 864 aa12.16□□□□□ -0.46
SF3B3-212ENST00000568539 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.16□□□□□ -0.46
SF3B3-212ENST00000568539 KDM2AQ9Y2K7 1162 aa12.16□□□□□ -0.46
SF3B3-212ENST00000568539 ADGRF5Q8IZF2 1346 aa12.15□□□□□ -0.46
SF3B3-212ENST00000568539 PPP1R15AO75807 674 aaPredicted RBP12.15□□□□□ -0.46
SF3B3-212ENST00000568539 HDGFP51858 240 aaKnown RBP12.15□□□□□ -0.46
SF3B3-212ENST00000568539 NUTM2DQ5VT03 806 aaPredicted RBP12.15□□□□□ -0.46
SF3B3-212ENST00000568539 TXNDC2Q86VQ3 553 aa12.15□□□□□ -0.46
SF3B3-212ENST00000568539 NRXN1Q9ULB1 1477 aa12.14□□□□□ -0.47
SF3B3-212ENST00000568539 ANKLE2Q86XL3 938 aa12.14□□□□□ -0.47
SF3B3-212ENST00000568539 EID1Q9Y6B2 187 aa12.14□□□□□ -0.47
SF3B3-212ENST00000568539 LTBP4Q8N2S1 1624 aa12.14□□□□□ -0.47
SF3B3-212ENST00000568539 SCAF11Q99590 1463 aaKnown RBP12.14□□□□□ -0.47
SF3B3-212ENST00000568539 PRAG1Q86YV5 1406 aa12.13□□□□□ -0.47
SF3B3-212ENST00000568539 SETD1BQ9UPS6 1966 aaKnown RBP12.13□□□□□ -0.47
SF3B3-212ENST00000568539 ZEB1P37275 1124 aaPredicted RBP12.13□□□□□ -0.47
SF3B3-212ENST00000568539 IFT172Q9UG01 1749 aa12.13□□□□□ -0.47
SF3B3-212ENST00000568539 PPLO60437 1756 aa12.13□□□□□ -0.47
SF3B3-212ENST00000568539 PIK3C2GO75747 1445 aa12.12□□□□□ -0.47
SF3B3-212ENST00000568539 MYO5BQ9ULV0 1848 aa12.12□□□□□ -0.47
SF3B3-212ENST00000568539 NBPF8Q3BBV2 869 aa12.12□□□□□ -0.47
SF3B3-212ENST00000568539 PLEKHG1Q9ULL1 1385 aa12.12□□□□□ -0.47
SF3B3-212ENST00000568539 NCKAP5LQ9HCH0 1330 aa12.11□□□□□ -0.47
SF3B3-212ENST00000568539 MED14O60244 1454 aa12.1□□□□□ -0.47
SF3B3-212ENST00000568539 SETBP1Q9Y6X0 1596 aa12.09□□□□□ -0.47
SF3B3-212ENST00000568539 NPHP4O75161 1426 aaPredicted RBP12.09□□□□□ -0.47
SF3B3-212ENST00000568539 CFAP70Q5T0N1 1121 aa12.08□□□□□ -0.48
SF3B3-212ENST00000568539 C14orf93Q9H972 538 aaKnown RBP12.08□□□□□ -0.48
SF3B3-212ENST00000568539 ADAMTS13Q76LX8 1427 aa12.08□□□□□ -0.48
SF3B3-212ENST00000568539 MED1Q15648 1581 aaPredicted RBP12.08□□□□□ -0.48
SF3B3-212ENST00000568539 FKBP8Q14318 412 aa12.07□□□□□ -0.48
SF3B3-212ENST00000568539 BCANQ96GW7 911 aa12.06□□□□□ -0.48
SF3B3-212ENST00000568539 NRXN3Q9Y4C0 1643 aa12.06□□□□□ -0.48
SF3B3-212ENST00000568539 RALGAPBQ86X10 1494 aa12.06□□□□□ -0.48
SF3B3-212ENST00000568539 ALKQ9UM73 1620 aa12.05□□□□□ -0.48
SF3B3-212ENST00000568539 NBPF1Q3BBV0 1214 aa12.05□□□□□ -0.48
SF3B3-212ENST00000568539 SLC26A8Q96RN1 970 aa12.05□□□□□ -0.48
SF3B3-212ENST00000568539 TBX22Q9Y458 520 aa12.05□□□□□ -0.48
SF3B3-212ENST00000568539 ADGRB1O14514 1584 aa12.04□□□□□ -0.48
SF3B3-212ENST00000568539 DIP2AQ14689 1571 aa12.04□□□□□ -0.48
SF3B3-212ENST00000568539 ROCK2O75116 1388 aaKnown RBP12.04□□□□□ -0.48
SF3B3-212ENST00000568539 METP08581 1390 aa12.04□□□□□ -0.48
SF3B3-212ENST00000568539 LAMC1P11047 1609 aa12.04□□□□□ -0.48
SF3B3-212ENST00000568539 GPRASP1Q5JY77 1395 aa12.04□□□□□ -0.48
SF3B3-212ENST00000568539 TRPM1Q7Z4N2 1603 aa12.04□□□□□ -0.48
SF3B3-212ENST00000568539 IQGAP1P46940 1657 aa12.03□□□□□ -0.48
SF3B3-212ENST00000568539 POLR1AO95602 1720 aaPredicted RBP12.03□□□□□ -0.48
SF3B3-212ENST00000568539 ASXL1Q8IXJ9 1541 aa12.03□□□□□ -0.48
SF3B3-212ENST00000568539 TMEM132EQ6IEE7 984 aa12.02□□□□□ -0.49
SF3B3-212ENST00000568539 KIAA1210Q9ULL0 1709 aa12.02□□□□□ -0.49
SF3B3-212ENST00000568539 PIK3R4Q99570 1358 aa12.01□□□□□ -0.49
SF3B3-212ENST00000568539 IQSEC2Q5JU85 1478 aa12.01□□□□□ -0.49
SF3B3-212ENST00000568539 SETD1AO15047 1707 aaKnown RBP12□□□□□ -0.49
SF3B3-212ENST00000568539 CARD11Q9BXL7 1154 aa12□□□□□ -0.49
SF3B3-212ENST00000568539 LRPPRCP42704 1394 aaKnown RBP12□□□□□ -0.49
SF3B3-212ENST00000568539 PTPRUQ92729 1446 aa12□□□□□ -0.49
SF3B3-212ENST00000568539 YTHDC2Q9H6S0 1430 aaKnown RBP11.99□□□□□ -0.49
SF3B3-212ENST00000568539 ABCC11Q96J66 1382 aa11.98□□□□□ -0.49
SF3B3-212ENST00000568539 TECPR2O15040 1411 aa11.97□□□□□ -0.49
SF3B3-212ENST00000568539 STK26Q9P289 416 aa11.97□□□□□ -0.49
SF3B3-212ENST00000568539 ZNF219Q9P2Y4 722 aaPredicted RBP11.97□□□□□ -0.49
SF3B3-212ENST00000568539 AMOTL2Q9Y2J4 779 aa11.97□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 6.8 ms