RNA–Protein interactions for RNA: ENST00000566339.5

SPSB3-208, Transcript of splA/ryanodine receptor domain and SOCS box containing 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SPSB3, Length 1,784 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPSB3-208ENST00000566339 PANK3Q9H999 370 aa28.42■■■□□ 2.14
SPSB3-208ENST00000566339 NPC1L1Q9UHC9 1359 aa28.41■■■□□ 2.14
SPSB3-208ENST00000566339 RTEL1-TNFRSF6BF6WH68 1400 aa28.41■■■□□ 2.14
SPSB3-208ENST00000566339 CDCA8Q53HL2 280 aa28.41■■■□□ 2.14
SPSB3-208ENST00000566339 ZFYVE16Q7Z3T8 1539 aa28.41■■■□□ 2.14
SPSB3-208ENST00000566339 SYNMO15061 1565 aa28.41■■■□□ 2.14
SPSB3-208ENST00000566339 IQGAP1P46940 1657 aa28.4■■■□□ 2.14
SPSB3-208ENST00000566339 AEBP2Q6ZN18 517 aaPredicted RBP28.39■■■□□ 2.14
SPSB3-208ENST00000566339 CEP152O94986 1710 aa28.38■■■□□ 2.13
SPSB3-208ENST00000566339 MADDQ8WXG6 1647 aa28.38■■■□□ 2.13
SPSB3-208ENST00000566339 SCAPERQ9BY12 1400 aa28.38■■■□□ 2.13
SPSB3-208ENST00000566339 TRAPPC8Q9Y2L5 1435 aa28.38■■■□□ 2.13
SPSB3-208ENST00000566339 SPHKAPQ2M3C7 1700 aa28.37■■■□□ 2.13
SPSB3-208ENST00000566339 TRPM2O94759 1503 aa28.37■■■□□ 2.13
SPSB3-208ENST00000566339 EFCAB2Q5VUJ9 269 aa28.37■■■□□ 2.13
SPSB3-208ENST00000566339 CDCA7LQ96GN5 454 aa28.37■■■□□ 2.13
SPSB3-208ENST00000566339 PIK3C2GO75747 1445 aa28.36■■■□□ 2.13
SPSB3-208ENST00000566339 NEURL4Q96JN8 1562 aa28.35■■■□□ 2.13
SPSB3-208ENST00000566339 INO80Q9ULG1 1556 aaPredicted RBP28.35■■■□□ 2.13
SPSB3-208ENST00000566339 SLC24A1O60721 1099 aa28.34■■■□□ 2.13
SPSB3-208ENST00000566339 CENPQQ7L2Z9 268 aaPredicted RBP28.34■■■□□ 2.13
SPSB3-208ENST00000566339 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.34■■■□□ 2.13
SPSB3-208ENST00000566339 EIF3AQ14152 1382 aaKnown RBP28.33■■■□□ 2.13
SPSB3-208ENST00000566339 TET3O43151 1660 aa28.33■■■□□ 2.13
SPSB3-208ENST00000566339 KDM2BQ8NHM5 1336 aa28.33■■■□□ 2.12
SPSB3-208ENST00000566339 VWDEQ8N2E2 1590 aa28.32■■■□□ 2.12
SPSB3-208ENST00000566339 RGL3Q3MIN7 710 aa28.32■■■□□ 2.12
SPSB3-208ENST00000566339 CC2D1BQ5T0F9 858 aaKnown RBP28.32■■■□□ 2.12
SPSB3-208ENST00000566339 CRBNQ96SW2 442 aa28.32■■■□□ 2.12
SPSB3-208ENST00000566339 NGEFQ8N5V2 710 aa28.32■■■□□ 2.12
SPSB3-208ENST00000566339 ZNF521Q96K83 1311 aa28.3■■■□□ 2.12
SPSB3-208ENST00000566339 KIAA1210Q9ULL0 1709 aa28.3■■■□□ 2.12
SPSB3-208ENST00000566339 PTPRTO14522 1441 aa28.29■■■□□ 2.12
SPSB3-208ENST00000566339 SCAF11Q99590 1463 aaKnown RBP28.29■■■□□ 2.12
SPSB3-208ENST00000566339 ASXL1Q8IXJ9 1541 aa28.29■■■□□ 2.12
SPSB3-208ENST00000566339 GRWD1Q9BQ67 446 aaKnown RBP eCLIP28.27■■■□□ 2.121e-6■■■□□ 17.1
SPSB3-208ENST00000566339 SALL2Q9Y467 1007 aaPredicted RBP28.27■■■□□ 2.12
SPSB3-208ENST00000566339 KNSTRNQ9Y448 316 aa28.27■■■□□ 2.12
SPSB3-208ENST00000566339 SENP3-EIF4A1A0A087X0R7 540 aa28.26■■■□□ 2.11
SPSB3-208ENST00000566339 CLTCL1P53675 1640 aa28.25■■■□□ 2.11
SPSB3-208ENST00000566339 PPP2R1AP30153 589 aa28.25■■■□□ 2.11
SPSB3-208ENST00000566339 WDR43Q15061 677 aaKnown RBP eCLIP28.25■■■□□ 2.11
SPSB3-208ENST00000566339 NPM2Q86SE8 214 aaKnown RBP28.25■■■□□ 2.11
SPSB3-208ENST00000566339 DUSP27Q5VZP5 1158 aa28.24■■■□□ 2.11
SPSB3-208ENST00000566339 ADAMTS8Q9UP79 889 aa28.24■■■□□ 2.11
SPSB3-208ENST00000566339 NEO1Q92859 1461 aa28.23■■■□□ 2.11
SPSB3-208ENST00000566339 ATP7AQ04656 1500 aa28.23■■■□□ 2.11
SPSB3-208ENST00000566339 RAPGEF3O95398 923 aa28.22■■■□□ 2.11
SPSB3-208ENST00000566339 GOLGA2Q08379 1002 aa28.22■■■□□ 2.11
SPSB3-208ENST00000566339 AMER1Q5JTC6 1135 aaPredicted RBP28.22■■■□□ 2.11
SPSB3-208ENST00000566339 NEFMP07197 916 aa28.21■■■□□ 2.11
SPSB3-208ENST00000566339 KDM4FA0A1W2PPD8 638 aa28.2■■■□□ 2.11
SPSB3-208ENST00000566339 TRMT2AQ8IZ69 625 aaKnown RBP28.19■■■□□ 2.1
SPSB3-208ENST00000566339 PLEKHH1Q9ULM0 1364 aa28.19■■■□□ 2.1
SPSB3-208ENST00000566339 SPAG9O60271 1321 aaKnown RBP28.19■■■□□ 2.1
SPSB3-208ENST00000566339 PLIN1O60240 522 aa28.19■■■□□ 2.1
SPSB3-208ENST00000566339 FANCAO15360 1455 aa28.18■■■□□ 2.1
SPSB3-208ENST00000566339 MROH1Q8NDA8 1641 aa28.18■■■□□ 2.1
SPSB3-208ENST00000566339 FAM161AQ3B820 660 aa28.17■■■□□ 2.1
SPSB3-208ENST00000566339 NINLQ9Y2I6 1382 aa28.16■■■□□ 2.1
SPSB3-208ENST00000566339 MYOM1P52179 1685 aa28.15■■■□□ 2.1
SPSB3-208ENST00000566339 SLFN5Q08AF3 891 aa28.15■■■□□ 2.1
SPSB3-208ENST00000566339 KDM5AP29375 1690 aaKnown RBP28.14■■■□□ 2.1
SPSB3-208ENST00000566339 CFAP74Q9C0B2 1584 aa28.11■■■□□ 2.09
SPSB3-208ENST00000566339 NKTRP30414 1462 aaKnown RBP28.11■■■□□ 2.09
SPSB3-208ENST00000566339 IFT172Q9UG01 1749 aa28.1■■■□□ 2.09
SPSB3-208ENST00000566339 MYOM2P54296 1465 aa28.09■■■□□ 2.09
SPSB3-208ENST00000566339 LAS1LQ9Y4W2 734 aaKnown RBP28.08■■■□□ 2.09
SPSB3-208ENST00000566339 ADGRL1O94910 1474 aa28.08■■■□□ 2.09
SPSB3-208ENST00000566339 C20orf194Q5TEA3 1177 aa28.07■■■□□ 2.08
SPSB3-208ENST00000566339 FRMPD1Q5SYB0 1578 aa28.07■■■□□ 2.08
SPSB3-208ENST00000566339 E9PSI1 815 aa28.06■■■□□ 2.08
SPSB3-208ENST00000566339 DAXXQ9UER7 740 aaPredicted RBP28.06■■■□□ 2.08
SPSB3-208ENST00000566339 EFCAB6Q5THR3 1501 aa28.05■■■□□ 2.08
SPSB3-208ENST00000566339 AAMPQ13685 434 aa28.04■■■□□ 2.08
SPSB3-208ENST00000566339 AFAP1Q8N556 730 aa28.04■■■□□ 2.08
SPSB3-208ENST00000566339 LMTK2Q8IWU2 1503 aa28.04■■■□□ 2.08
SPSB3-208ENST00000566339 C8orf34Q49A92 452 aa28.04■■■□□ 2.08
SPSB3-208ENST00000566339 KANK1Q14678 1352 aa28.03■■■□□ 2.08
SPSB3-208ENST00000566339 KIDINS220Q9ULH0 1771 aa28.03■■■□□ 2.08
SPSB3-208ENST00000566339 SBNO2Q9Y2G9 1366 aa28.03■■■□□ 2.08
SPSB3-208ENST00000566339 KIF1BO60333 1816 aa28.02■■■□□ 2.08
SPSB3-208ENST00000566339 RICTORQ6R327 1708 aa28.02■■■□□ 2.08
SPSB3-208ENST00000566339 MYO3AQ8NEV4 1616 aa28.02■■■□□ 2.08
SPSB3-208ENST00000566339 ABCA6Q8N139 1617 aa28.01■■■□□ 2.07
SPSB3-208ENST00000566339 ZMYM3Q14202 1370 aa28.01■■■□□ 2.07
SPSB3-208ENST00000566339 CGNL1Q0VF96 1302 aa28■■■□□ 2.07
SPSB3-208ENST00000566339 PDE3AQ14432 1141 aa28■■■□□ 2.07
SPSB3-208ENST00000566339 VIRMAQ69YN4 1812 aaKnown RBP28■■■□□ 2.07
SPSB3-208ENST00000566339 GSE1Q14687 1217 aa27.97■■■□□ 2.07
SPSB3-208ENST00000566339 POLR3AO14802 1390 aaPredicted RBP27.97■■■□□ 2.07
SPSB3-208ENST00000566339 NFKBIBQ15653 356 aa27.96■■■□□ 2.07
SPSB3-208ENST00000566339 MROH2AA6NES4 1674 aa27.96■■■□□ 2.07
SPSB3-208ENST00000566339 NRXN1Q9ULB1 1477 aa27.95■■■□□ 2.07
SPSB3-208ENST00000566339 NCBP3Q53F19 620 aaKnown RBP27.94■■■□□ 2.06
SPSB3-208ENST00000566339 ERVK-7P63135 1459 aa27.94■■■□□ 2.06
SPSB3-208ENST00000566339 MAPK8IP3Q9UPT6 1336 aa27.94■■■□□ 2.06
SPSB3-208ENST00000566339 POGZQ7Z3K3 1410 aa27.92■■■□□ 2.06
SPSB3-208ENST00000566339 SETBP1Q9Y6X0 1596 aa27.91■■■□□ 2.06
SPSB3-208ENST00000566339 ADGRB3O60242 1522 aa27.9■■■□□ 2.06
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms