RNA–Protein interactions for RNA: ENST00000561258.1

VPS13C-210, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 3

Gene VPS13C, Length 614 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-210ENST00000561258 ADGRG1Q9Y653 693 aa11.15□□□□□ -0.62
VPS13C-210ENST00000561258 TRAF7Q6Q0C0 670 aa11.14□□□□□ -0.63
VPS13C-210ENST00000561258 BLOC1S3Q6QNY0 202 aa11.14□□□□□ -0.63
VPS13C-210ENST00000561258 RBM46Q8TBY0 533 aaKnown RBP11.13□□□□□ -0.63
VPS13C-210ENST00000561258 TMEM134Q9H6X4 195 aa11.13□□□□□ -0.63
VPS13C-210ENST00000561258 NRG2O14511 850 aaPredicted RBP11.12□□□□□ -0.63
VPS13C-210ENST00000561258 GGCXP38435 758 aa11.12□□□□□ -0.63
VPS13C-210ENST00000561258 VSIG10Q8N0Z9 540 aa11.12□□□□□ -0.63
VPS13C-210ENST00000561258 RCCD1A6NED2 376 aa11.11□□□□□ -0.63
VPS13C-210ENST00000561258 PRR14Q9BWN1 585 aa11.11□□□□□ -0.63
VPS13C-210ENST00000561258 SEMA3EO15041 775 aa11.1□□□□□ -0.63
VPS13C-210ENST00000561258 TLL1O43897 1013 aa11.09□□□□□ -0.63
VPS13C-210ENST00000561258 BCANQ96GW7 911 aa11.09□□□□□ -0.63
VPS13C-210ENST00000561258 TMUB1Q9BVT8 246 aa11.09□□□□□ -0.63
VPS13C-210ENST00000561258 PDZRN3Q9UPQ7 1066 aa11.08□□□□□ -0.64
VPS13C-210ENST00000561258 RNF223E7ERA6 249 aa11.06□□□□□ -0.64
VPS13C-210ENST00000561258 FCHSD2O94868 740 aa11.06□□□□□ -0.64
VPS13C-210ENST00000561258 CFHP08603 1231 aa11.06□□□□□ -0.64
VPS13C-210ENST00000561258 ACTN4O43707 911 aaKnown RBP11.05□□□□□ -0.64
VPS13C-210ENST00000561258 SLC10A3P09131 477 aa11.05□□□□□ -0.64
VPS13C-210ENST00000561258 KMT5BQ4FZB7 885 aa11.05□□□□□ -0.64
VPS13C-210ENST00000561258 P3H3Q8IVL6 736 aa11.05□□□□□ -0.64
VPS13C-210ENST00000561258 EMID1Q96A84 441 aaPredicted RBP11.05□□□□□ -0.64
VPS13C-210ENST00000561258 PPEF1O14829 653 aaPredicted RBP11.03□□□□□ -0.64
VPS13C-210ENST00000561258 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.01□□□□□ -0.65
VPS13C-210ENST00000561258 S1PR4O95977 384 aa11.01□□□□□ -0.65
VPS13C-210ENST00000561258 SLC19A1P41440 591 aa11.01□□□□□ -0.65
VPS13C-210ENST00000561258 PXYLP1Q8TE99 480 aa11.01□□□□□ -0.65
VPS13C-210ENST00000561258 TRIM67Q6ZTA4 783 aa11□□□□□ -0.65
VPS13C-210ENST00000561258 RBM26Q5T8P6 1007 aaKnown RBP10.99□□□□□ -0.65
VPS13C-210ENST00000561258 KDM2AQ9Y2K7 1162 aa10.99□□□□□ -0.65
VPS13C-210ENST00000561258 OATP04181 439 aa10.97□□□□□ -0.65
VPS13C-210ENST00000561258 FECHP22830 423 aa10.97□□□□□ -0.65
VPS13C-210ENST00000561258 ANKLE1Q8NAG6 615 aa10.97□□□□□ -0.65
VPS13C-210ENST00000561258 HIC1Q14526 733 aa10.96□□□□□ -0.65
VPS13C-210ENST00000561258 SPRYD7Q5W111 196 aa10.96□□□□□ -0.65
VPS13C-210ENST00000561258 LIAT1Q6ZQX7 453 aa10.96□□□□□ -0.65
VPS13C-210ENST00000561258 METTL3Q86U44 580 aaKnown RBP10.96□□□□□ -0.65
VPS13C-210ENST00000561258 TESPA1A2RU30 521 aaPredicted RBP10.95□□□□□ -0.66
VPS13C-210ENST00000561258 NR1I2O75469 434 aa10.95□□□□□ -0.66
VPS13C-210ENST00000561258 ADH1BP00325 375 aa10.95□□□□□ -0.66
VPS13C-210ENST00000561258 PUS10Q3MIT2 529 aaKnown RBP10.95□□□□□ -0.66
VPS13C-210ENST00000561258 PRKCSHP14314 528 aaPredicted RBP10.94□□□□□ -0.66
VPS13C-210ENST00000561258 SCUBE3Q8IX30 993 aa10.94□□□□□ -0.66
VPS13C-210ENST00000561258 ZNF787Q6DD87 383 aa10.93□□□□□ -0.66
VPS13C-210ENST00000561258 ZNF598Q86UK7 904 aaKnown RBP10.93□□□□□ -0.66
VPS13C-210ENST00000561258 PLA2G2CQ5R387 149 aa10.92□□□□□ -0.66
VPS13C-210ENST00000561258 SLC6A16Q9GZN6 736 aa10.92□□□□□ -0.66
VPS13C-210ENST00000561258 NLRP7Q8WX94 980 aa10.91□□□□□ -0.66
VPS13C-210ENST00000561258 GNPATO15228 680 aa10.9□□□□□ -0.66
VPS13C-210ENST00000561258 GPR37O15354 613 aa10.9□□□□□ -0.66
VPS13C-210ENST00000561258 ZNF697Q5TEC3 545 aa10.9□□□□□ -0.66
VPS13C-210ENST00000561258 RSPH4AQ5TD94 716 aa10.88□□□□□ -0.67
VPS13C-210ENST00000561258 SMYD5Q6GMV2 418 aa10.88□□□□□ -0.67
VPS13C-210ENST00000561258 RDH13Q8NBN7 331 aa10.88□□□□□ -0.67
VPS13C-210ENST00000561258 TNFRSF10AO00220 468 aa10.87□□□□□ -0.67
VPS13C-210ENST00000561258 PRR20EP86478 221 aa10.87□□□□□ -0.67
VPS13C-210ENST00000561258 PRR20CP86479 221 aa10.87□□□□□ -0.67
VPS13C-210ENST00000561258 PRR20DP86480 221 aa10.87□□□□□ -0.67
VPS13C-210ENST00000561258 PRR20BP86481 221 aa10.87□□□□□ -0.67
VPS13C-210ENST00000561258 PRR20AP86496 221 aa10.87□□□□□ -0.67
VPS13C-210ENST00000561258 PKDCCQ504Y2 493 aa10.87□□□□□ -0.67
VPS13C-210ENST00000561258 SPSB2Q99619 263 aa10.87□□□□□ -0.67
VPS13C-210ENST00000561258 DAXXQ9UER7 740 aaPredicted RBP10.87□□□□□ -0.67
VPS13C-210ENST00000561258 DDX11L8A8MPP1 907 aa10.86□□□□□ -0.67
VPS13C-210ENST00000561258 GDF9O60383 454 aa10.86□□□□□ -0.67
VPS13C-210ENST00000561258 MYT1Q01538 1121 aa10.86□□□□□ -0.67
VPS13C-210ENST00000561258 FUT2Q10981 343 aa10.84□□□□□ -0.67
VPS13C-210ENST00000561258 MORN1Q5T089 497 aa10.84□□□□□ -0.67
VPS13C-210ENST00000561258 PHOX2BQ99453 314 aa10.84□□□□□ -0.67
VPS13C-210ENST00000561258 FAM187AA6NFU0 413 aa10.83□□□□□ -0.68
VPS13C-210ENST00000561258 DGAT1O75907 488 aa10.83□□□□□ -0.68
VPS13C-210ENST00000561258 ZNF775Q96BV0 537 aaPredicted RBP10.81□□□□□ -0.68
VPS13C-210ENST00000561258 ATP6V1AP38606 617 aa10.8□□□□□ -0.68
VPS13C-210ENST00000561258 THAP11Q96EK4 314 aa10.8□□□□□ -0.68
VPS13C-210ENST00000561258 SLC27A5Q9Y2P5 690 aa10.8□□□□□ -0.68
VPS13C-210ENST00000561258 POTECB2RU33 542 aa10.79□□□□□ -0.68
VPS13C-210ENST00000561258 GCGRP47871 477 aa10.79□□□□□ -0.68
VPS13C-210ENST00000561258 FOXC1Q12948 553 aa10.79□□□□□ -0.68
VPS13C-210ENST00000561258 PKD2L1Q9P0L9 805 aa10.79□□□□□ -0.68
VPS13C-210ENST00000561258 TPRNQ4KMQ1 711 aa10.78□□□□□ -0.68
VPS13C-210ENST00000561258 FAM160A2Q8N612 972 aaPredicted RBP10.78□□□□□ -0.68
VPS13C-210ENST00000561258 FCF1Q9Y324 198 aaKnown RBP10.78□□□□□ -0.68
VPS13C-210ENST00000561258 GPIHBP1Q8IV16 184 aa10.77□□□□□ -0.69
VPS13C-210ENST00000561258 PRDM9Q9NQV7 894 aa10.76□□□□□ -0.69
VPS13C-210ENST00000561258 ST8SIA5O15466 376 aa10.75□□□□□ -0.69
VPS13C-210ENST00000561258 FMNL1O95466 1100 aaPredicted RBP10.75□□□□□ -0.69
VPS13C-210ENST00000561258 SULF1Q8IWU6 871 aa10.75□□□□□ -0.69
VPS13C-210ENST00000561258 RPIAP49247 311 aa10.73□□□□□ -0.69
VPS13C-210ENST00000561258 BRICD5Q6PL45 260 aa10.73□□□□□ -0.69
VPS13C-210ENST00000561258 RNF19BQ6ZMZ0 732 aa10.73□□□□□ -0.69
VPS13C-210ENST00000561258 AAASQ9NRG9 546 aa10.72□□□□□ -0.69
VPS13C-210ENST00000561258 CD2BP2O95400 341 aaKnown RBP10.7□□□□□ -0.7
VPS13C-210ENST00000561258 LMOD2Q6P5Q4 547 aa10.7□□□□□ -0.7
VPS13C-210ENST00000561258 SALL2Q9Y467 1007 aaPredicted RBP10.7□□□□□ -0.7
VPS13C-210ENST00000561258 TOR4AQ9NXH8 423 aa10.68□□□□□ -0.7
VPS13C-210ENST00000561258 MSS51Q4VC12 460 aa10.67□□□□□ -0.7
VPS13C-210ENST00000561258 DACH1Q9UI36 760 aa10.67□□□□□ -0.7
VPS13C-210ENST00000561258 CD46P15529 392 aa10.66□□□□□ -0.7
VPS13C-210ENST00000561258 CYP4X1Q8N118 509 aa10.66□□□□□ -0.7
Retrieved 100 of 20,778 RNA–protein pairs in 12.8 ms