RNA–Protein interactions for RNA: ENST00000560565.1

CCDC33-209, Transcript of coiled-coil domain containing 33, humanhuman

TSL 1 (best)

Gene CCDC33, Length 1,275 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC33-209ENST00000560565 UPF1Q92900 1129 aaKnown RBP eCLIP11.78□□□□□ -0.52
CCDC33-209ENST00000560565 ERVK-7P63135 1459 aa11.77□□□□□ -0.52
CCDC33-209ENST00000560565 TET3O43151 1660 aa11.77□□□□□ -0.53
CCDC33-209ENST00000560565 PLA2R1Q13018 1463 aa11.76□□□□□ -0.53
CCDC33-209ENST00000560565 VWDEQ8N2E2 1590 aa11.76□□□□□ -0.53
CCDC33-209ENST00000560565 BCL11AQ9H165 835 aa11.76□□□□□ -0.53
CCDC33-209ENST00000560565 LMTK2Q8IWU2 1503 aa11.76□□□□□ -0.53
CCDC33-209ENST00000560565 UGGT1Q9NYU2 1555 aa11.75□□□□□ -0.53
CCDC33-209ENST00000560565 PPP1R15AO75807 674 aaPredicted RBP11.75□□□□□ -0.53
CCDC33-209ENST00000560565 ANKLE2Q86XL3 938 aa11.75□□□□□ -0.53
CCDC33-209ENST00000560565 SLC4A1APQ9BWU0 796 aaKnown RBP11.75□□□□□ -0.53
CCDC33-209ENST00000560565 RBM19Q9Y4C8 960 aaKnown RBP11.75□□□□□ -0.53
CCDC33-209ENST00000560565 ZNF335Q9H4Z2 1342 aaPredicted RBP11.75□□□□□ -0.53
CCDC33-209ENST00000560565 NUP155O75694 1391 aa11.75□□□□□ -0.53
CCDC33-209ENST00000560565 TONSLQ96HA7 1378 aa11.73□□□□□ -0.53
CCDC33-209ENST00000560565 ANKRD30BQ9BXX2 1392 aa11.73□□□□□ -0.53
CCDC33-209ENST00000560565 SPHKAPQ2M3C7 1700 aa11.72□□□□□ -0.53
CCDC33-209ENST00000560565 EFCAB6Q5THR3 1501 aa11.72□□□□□ -0.53
CCDC33-209ENST00000560565 PIP4K2BP78356 416 aa11.72□□□□□ -0.53
CCDC33-209ENST00000560565 STAG3Q9UJ98 1225 aa11.72□□□□□ -0.53
CCDC33-209ENST00000560565 E9PCH4 1651 aa11.71□□□□□ -0.53
CCDC33-209ENST00000560565 RPRD2Q5VT52 1461 aaKnown RBP11.71□□□□□ -0.53
CCDC33-209ENST00000560565 IDI1Q13907 227 aa11.71□□□□□ -0.53
CCDC33-209ENST00000560565 POLR1AO95602 1720 aaPredicted RBP11.71□□□□□ -0.54
CCDC33-209ENST00000560565 UBR1Q8IWV7 1749 aa11.7□□□□□ -0.54
CCDC33-209ENST00000560565 SLC52A1Q9NWF4 448 aa11.7□□□□□ -0.54
CCDC33-209ENST00000560565 DDX10Q13206 875 aaKnown RBP11.69□□□□□ -0.54
CCDC33-209ENST00000560565 NOS1P29475 1434 aa11.69□□□□□ -0.54
CCDC33-209ENST00000560565 PIK3C2BO00750 1634 aa11.68□□□□□ -0.54
CCDC33-209ENST00000560565 KIF1BO60333 1816 aa11.67□□□□□ -0.54
CCDC33-209ENST00000560565 SYNMO15061 1565 aa11.67□□□□□ -0.54
CCDC33-209ENST00000560565 TXNDC2Q86VQ3 553 aa11.67□□□□□ -0.54
CCDC33-209ENST00000560565 EID1Q9Y6B2 187 aa11.67□□□□□ -0.54
CCDC33-209ENST00000560565 NEURL4Q96JN8 1562 aa11.67□□□□□ -0.54
CCDC33-209ENST00000560565 MED14O60244 1454 aa11.66□□□□□ -0.54
CCDC33-209ENST00000560565 SIN3AQ96ST3 1273 aa11.66□□□□□ -0.54
CCDC33-209ENST00000560565 SENP3Q9H4L4 574 aaPredicted RBP11.66□□□□□ -0.54
CCDC33-209ENST00000560565 NPHP4O75161 1426 aaPredicted RBP11.66□□□□□ -0.54
CCDC33-209ENST00000560565 KDM5AP29375 1690 aaKnown RBP11.65□□□□□ -0.54
CCDC33-209ENST00000560565 LTKP29376 864 aa11.65□□□□□ -0.54
CCDC33-209ENST00000560565 PPP4R2Q9NY27 417 aa11.65□□□□□ -0.54
CCDC33-209ENST00000560565 TMEM2Q9UHN6 1383 aa11.65□□□□□ -0.55
CCDC33-209ENST00000560565 SLIT1O75093 1534 aa11.65□□□□□ -0.55
CCDC33-209ENST00000560565 TRPM2O94759 1503 aa11.65□□□□□ -0.55
CCDC33-209ENST00000560565 IQGAP1P46940 1657 aa11.64□□□□□ -0.55
CCDC33-209ENST00000560565 SCAF11Q99590 1463 aaKnown RBP11.63□□□□□ -0.55
CCDC33-209ENST00000560565 ARHGAP23Q9P227 1491 aa11.63□□□□□ -0.55
CCDC33-209ENST00000560565 CHGAP10645 457 aaKnown RBP11.63□□□□□ -0.55
CCDC33-209ENST00000560565 ADGRB3O60242 1522 aa11.62□□□□□ -0.55
CCDC33-209ENST00000560565 TOM1O60784 492 aa11.62□□□□□ -0.55
CCDC33-209ENST00000560565 HDGFP51858 240 aaKnown RBP11.62□□□□□ -0.55
CCDC33-209ENST00000560565 BCANQ96GW7 911 aa11.62□□□□□ -0.55
CCDC33-209ENST00000560565 CCDC144AA2RUR9 1427 aa11.61□□□□□ -0.55
CCDC33-209ENST00000560565 MYO5BQ9ULV0 1848 aa11.61□□□□□ -0.55
CCDC33-209ENST00000560565 FOXD1Q16676 465 aa11.6□□□□□ -0.55
CCDC33-209ENST00000560565 TMEM131LA2VDJ0 1609 aa11.6□□□□□ -0.55
CCDC33-209ENST00000560565 CLTCL1P53675 1640 aa11.58□□□□□ -0.56
CCDC33-209ENST00000560565 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.58□□□□□ -0.56
CCDC33-209ENST00000560565 CPS1P31327 1500 aa11.58□□□□□ -0.56
CCDC33-209ENST00000560565 IFT172Q9UG01 1749 aa11.57□□□□□ -0.56
CCDC33-209ENST00000560565 RBM33Q96EV2 1170 aaKnown RBP11.57□□□□□ -0.56
CCDC33-209ENST00000560565 RIMS2Q9UQ26 1411 aa11.57□□□□□ -0.56
CCDC33-209ENST00000560565 STAC3Q96MF2 364 aa11.56□□□□□ -0.56
CCDC33-209ENST00000560565 SLC26A8Q96RN1 970 aa11.56□□□□□ -0.56
CCDC33-209ENST00000560565 ZFYVE9O95405 1425 aa11.55□□□□□ -0.56
CCDC33-209ENST00000560565 HNRNPUQ00839 825 aaKnown RBP eCLIP11.55□□□□□ -0.56
CCDC33-209ENST00000560565 ZNF326Q5BKZ1 582 aaKnown RBP11.55□□□□□ -0.56
CCDC33-209ENST00000560565 NUTM2DQ5VT03 806 aaPredicted RBP11.55□□□□□ -0.56
CCDC33-209ENST00000560565 L3MBTL2Q969R5 705 aa11.55□□□□□ -0.56
CCDC33-209ENST00000560565 KIAA1210Q9ULL0 1709 aa11.55□□□□□ -0.56
CCDC33-209ENST00000560565 STRCP1A6NGW2 1772 aa11.54□□□□□ -0.56
CCDC33-209ENST00000560565 EIF4G2P78344 907 aaKnown RBP eCLIP11.54□□□□□ -0.56
CCDC33-209ENST00000560565 ZBED9Q6R2W3 1325 aa11.54□□□□□ -0.56
CCDC33-209ENST00000560565 PLEKHG1Q9ULL1 1385 aa11.54□□□□□ -0.56
CCDC33-209ENST00000560565 LAMC1P11047 1609 aa11.53□□□□□ -0.56
CCDC33-209ENST00000560565 TRPM1Q7Z4N2 1603 aa11.53□□□□□ -0.56
CCDC33-209ENST00000560565 SPATA31E1Q6ZUB1 1445 aa11.52□□□□□ -0.56
CCDC33-209ENST00000560565 PPLO60437 1756 aa11.52□□□□□ -0.57
CCDC33-209ENST00000560565 KCNA6P17658 529 aa11.52□□□□□ -0.57
CCDC33-209ENST00000560565 SETBP1Q9Y6X0 1596 aa11.52□□□□□ -0.57
CCDC33-209ENST00000560565 ALKQ9UM73 1620 aa11.51□□□□□ -0.57
CCDC33-209ENST00000560565 TBX22Q9Y458 520 aa11.51□□□□□ -0.57
CCDC33-209ENST00000560565 RALGAPBQ86X10 1494 aa11.51□□□□□ -0.57
CCDC33-209ENST00000560565 LRRC7Q96NW7 1537 aa11.5□□□□□ -0.57
CCDC33-209ENST00000560565 SLC34A2O95436 690 aa11.5□□□□□ -0.57
CCDC33-209ENST00000560565 ANP32AP39687 249 aaKnown RBP11.5□□□□□ -0.57
CCDC33-209ENST00000560565 RTL5Q5HYW3 569 aaPredicted RBP11.49□□□□□ -0.57
CCDC33-209ENST00000560565 PROSER2Q86WR7 435 aaPredicted RBP11.49□□□□□ -0.57
CCDC33-209ENST00000560565 CHD2O14647 1828 aaKnown RBP11.48□□□□□ -0.57
CCDC33-209ENST00000560565 MYOM2P54296 1465 aa11.47□□□□□ -0.57
CCDC33-209ENST00000560565 PRAG1Q86YV5 1406 aa11.47□□□□□ -0.57
CCDC33-209ENST00000560565 RPGRIP1LQ68CZ1 1315 aa11.47□□□□□ -0.57
CCDC33-209ENST00000560565 VGFO15240 615 aaPredicted RBP11.47□□□□□ -0.57
CCDC33-209ENST00000560565 NOP58Q9Y2X3 529 aaKnown RBP11.47□□□□□ -0.57
CCDC33-209ENST00000560565 ADAMTS13Q76LX8 1427 aa11.46□□□□□ -0.57
CCDC33-209ENST00000560565 XIRP1Q702N8 1843 aaKnown RBP11.46□□□□□ -0.58
CCDC33-209ENST00000560565 DIP2AQ14689 1571 aa11.45□□□□□ -0.58
CCDC33-209ENST00000560565 TMEM94Q12767 1356 aa11.45□□□□□ -0.58
CCDC33-209ENST00000560565 KTN1Q86UP2 1357 aaKnown RBP11.45□□□□□ -0.58
CCDC33-209ENST00000560565 PIK3R4Q99570 1358 aa11.45□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 16.3 ms