RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 OATP04181 439 aa12.7□□□□□ -0.38
VPS13C-208ENST00000559119 COPS2P61201 443 aa12.7□□□□□ -0.38
VPS13C-208ENST00000559119 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.68□□□□□ -0.38
VPS13C-208ENST00000559119 PCDHB3Q9Y5E6 796 aa12.67□□□□□ -0.38
VPS13C-208ENST00000559119 PPP1R18Q6NYC8 613 aa12.66□□□□□ -0.38
VPS13C-208ENST00000559119 GNPATO15228 680 aa12.65□□□□□ -0.38
VPS13C-208ENST00000559119 KMT5BQ4FZB7 885 aa12.65□□□□□ -0.38
VPS13C-208ENST00000559119 PXYLP1Q8TE99 480 aa12.65□□□□□ -0.38
VPS13C-208ENST00000559119 VSIG10Q8N0Z9 540 aa12.64□□□□□ -0.39
VPS13C-208ENST00000559119 NKX2-3Q8TAU0 364 aa12.63□□□□□ -0.39
VPS13C-208ENST00000559119 ZPR1O75312 459 aa12.62□□□□□ -0.39
VPS13C-208ENST00000559119 METTL3Q86U44 580 aaKnown RBP12.62□□□□□ -0.39
VPS13C-208ENST00000559119 EIF4ENIF1Q9NRA8 985 aaKnown RBP12.62□□□□□ -0.39
VPS13C-208ENST00000559119 CFHP08603 1231 aa12.61□□□□□ -0.39
VPS13C-208ENST00000559119 FECHP22830 423 aa12.61□□□□□ -0.39
VPS13C-208ENST00000559119 GGCXP38435 758 aa12.61□□□□□ -0.39
VPS13C-208ENST00000559119 BLOC1S3Q6QNY0 202 aa12.61□□□□□ -0.39
VPS13C-208ENST00000559119 GPR37O15354 613 aa12.59□□□□□ -0.39
VPS13C-208ENST00000559119 ACTN4O43707 911 aaKnown RBP12.59□□□□□ -0.39
VPS13C-208ENST00000559119 RSPH4AQ5TD94 716 aa12.59□□□□□ -0.39
VPS13C-208ENST00000559119 GPIHBP1Q8IV16 184 aa12.59□□□□□ -0.39
VPS13C-208ENST00000559119 PRKD2Q9BZL6 878 aa12.58□□□□□ -0.4
VPS13C-208ENST00000559119 SLC10A3P09131 477 aa12.57□□□□□ -0.4
VPS13C-208ENST00000559119 TULP1O00294 542 aaPredicted RBP12.56□□□□□ -0.4
VPS13C-208ENST00000559119 TMUB1Q9BVT8 246 aa12.54□□□□□ -0.4
VPS13C-208ENST00000559119 V9GY48 417 aaPredicted RBP12.53□□□□□ -0.4
VPS13C-208ENST00000559119 DAXXQ9UER7 740 aaPredicted RBP12.52□□□□□ -0.41
VPS13C-208ENST00000559119 LAPTM4AQ15012 233 aa12.51□□□□□ -0.41
VPS13C-208ENST00000559119 TLL1O43897 1013 aa12.5□□□□□ -0.41
VPS13C-208ENST00000559119 NR1I2O75469 434 aa12.5□□□□□ -0.41
VPS13C-208ENST00000559119 Q6ZNB5 142 aa12.5□□□□□ -0.41
VPS13C-208ENST00000559119 RDH13Q8NBN7 331 aa12.5□□□□□ -0.41
VPS13C-208ENST00000559119 DDX11L8A8MPP1 907 aa12.48□□□□□ -0.41
VPS13C-208ENST00000559119 GFRA3O60609 400 aa12.48□□□□□ -0.41
VPS13C-208ENST00000559119 NLRP7Q8WX94 980 aa12.48□□□□□ -0.41
VPS13C-208ENST00000559119 SULF1Q8IWU6 871 aa12.46□□□□□ -0.41
VPS13C-208ENST00000559119 RNF223E7ERA6 249 aa12.45□□□□□ -0.42
VPS13C-208ENST00000559119 PUS10Q3MIT2 529 aaKnown RBP12.45□□□□□ -0.42
VPS13C-208ENST00000559119 ADH1BP00325 375 aa12.44□□□□□ -0.42
VPS13C-208ENST00000559119 PHOX2BQ99453 314 aa12.44□□□□□ -0.42
VPS13C-208ENST00000559119 SCUBE3Q8IX30 993 aa12.43□□□□□ -0.42
VPS13C-208ENST00000559119 S1PR4O95977 384 aa12.42□□□□□ -0.42
VPS13C-208ENST00000559119 MAP2K5Q13163 448 aa12.41□□□□□ -0.42
VPS13C-208ENST00000559119 ANKLE1Q8NAG6 615 aa12.4□□□□□ -0.42
VPS13C-208ENST00000559119 SLC6A16Q9GZN6 736 aa12.4□□□□□ -0.42
VPS13C-208ENST00000559119 NRG2O14511 850 aaPredicted RBP12.39□□□□□ -0.43
VPS13C-208ENST00000559119 PPEF1O14829 653 aaPredicted RBP12.39□□□□□ -0.43
VPS13C-208ENST00000559119 SLC19A1P41440 591 aa12.39□□□□□ -0.43
VPS13C-208ENST00000559119 GCGRP47871 477 aa12.39□□□□□ -0.43
VPS13C-208ENST00000559119 FUT2Q10981 343 aa12.39□□□□□ -0.43
VPS13C-208ENST00000559119 ATP6V1AP38606 617 aa12.38□□□□□ -0.43
VPS13C-208ENST00000559119 SPSB2Q99619 263 aa12.38□□□□□ -0.43
VPS13C-208ENST00000559119 PDZRN3Q9UPQ7 1066 aa12.38□□□□□ -0.43
VPS13C-208ENST00000559119 IRF6O14896 467 aa12.36□□□□□ -0.43
VPS13C-208ENST00000559119 MORN1Q5T089 497 aa12.36□□□□□ -0.43
VPS13C-208ENST00000559119 MINK1Q8N4C8 1332 aaPredicted RBP12.35□□□□□ -0.43
VPS13C-208ENST00000559119 GRIPAP1Q4V328 841 aa12.33□□□□□ -0.44
VPS13C-208ENST00000559119 TRAF7Q6Q0C0 670 aa12.32□□□□□ -0.44
VPS13C-208ENST00000559119 SLC27A5Q9Y2P5 690 aa12.32□□□□□ -0.44
VPS13C-208ENST00000559119 FMNL1O95466 1100 aaPredicted RBP12.31□□□□□ -0.44
VPS13C-208ENST00000559119 SPRYD7Q5W111 196 aa12.31□□□□□ -0.44
VPS13C-208ENST00000559119 EMID1Q96A84 441 aaPredicted RBP12.31□□□□□ -0.44
VPS13C-208ENST00000559119 MDM2Q00987 491 aaPredicted RBP12.3□□□□□ -0.44
VPS13C-208ENST00000559119 ZNF598Q86UK7 904 aaKnown RBP12.3□□□□□ -0.44
VPS13C-208ENST00000559119 CD46P15529 392 aa12.29□□□□□ -0.44
VPS13C-208ENST00000559119 LIAT1Q6ZQX7 453 aa12.29□□□□□ -0.44
VPS13C-208ENST00000559119 DHX30Q7L2E3 1194 aaKnown RBP eCLIP12.29□□□□□ -0.44
VPS13C-208ENST00000559119 CCDC102AQ96A19 550 aa12.29□□□□□ -0.44
VPS13C-208ENST00000559119 THAP11Q96EK4 314 aa12.28□□□□□ -0.44
VPS13C-208ENST00000559119 ZNF697Q5TEC3 545 aa12.27□□□□□ -0.45
VPS13C-208ENST00000559119 SALL2Q9Y467 1007 aaPredicted RBP12.27□□□□□ -0.45
VPS13C-208ENST00000559119 PLA2G2CQ5R387 149 aa12.25□□□□□ -0.45
VPS13C-208ENST00000559119 LMOD2Q6P5Q4 547 aa12.25□□□□□ -0.45
VPS13C-208ENST00000559119 KDM4AO75164 1064 aa12.24□□□□□ -0.45
VPS13C-208ENST00000559119 BRICD5Q6PL45 260 aa12.24□□□□□ -0.45
VPS13C-208ENST00000559119 TRIM67Q6ZTA4 783 aa12.24□□□□□ -0.45
VPS13C-208ENST00000559119 KRI1Q8N9T8 703 aaKnown RBP12.24□□□□□ -0.45
VPS13C-208ENST00000559119 LCE2BO14633 110 aa12.23□□□□□ -0.45
VPS13C-208ENST00000559119 CLCN1P35523 988 aa12.23□□□□□ -0.45
VPS13C-208ENST00000559119 Q3C1V9 767 aa12.23□□□□□ -0.45
VPS13C-208ENST00000559119 FAM160A2Q8N612 972 aaPredicted RBP12.23□□□□□ -0.45
VPS13C-208ENST00000559119 RNF19BQ6ZMZ0 732 aa12.22□□□□□ -0.45
VPS13C-208ENST00000559119 GPCPD1Q9NPB8 672 aa12.22□□□□□ -0.45
VPS13C-208ENST00000559119 FCF1Q9Y324 198 aaKnown RBP12.22□□□□□ -0.45
VPS13C-208ENST00000559119 PRR20EP86478 221 aa12.21□□□□□ -0.45
VPS13C-208ENST00000559119 PRR20CP86479 221 aa12.21□□□□□ -0.45
VPS13C-208ENST00000559119 PRR20DP86480 221 aa12.21□□□□□ -0.45
VPS13C-208ENST00000559119 PRR20BP86481 221 aa12.21□□□□□ -0.45
VPS13C-208ENST00000559119 PRR20AP86496 221 aa12.21□□□□□ -0.45
VPS13C-208ENST00000559119 USP46P62068 366 aa12.2□□□□□ -0.46
VPS13C-208ENST00000559119 PRDM9Q9NQV7 894 aa12.2□□□□□ -0.46
VPS13C-208ENST00000559119 MSS51Q4VC12 460 aa12.19□□□□□ -0.46
VPS13C-208ENST00000559119 TNFRSF10AO00220 468 aa12.18□□□□□ -0.46
VPS13C-208ENST00000559119 RPIAP49247 311 aa12.18□□□□□ -0.46
VPS13C-208ENST00000559119 PKDCCQ504Y2 493 aa12.18□□□□□ -0.46
VPS13C-208ENST00000559119 FAM217BQ9NTX9 383 aaPredicted RBP12.17□□□□□ -0.46
VPS13C-208ENST00000559119 GDF9O60383 454 aa12.16□□□□□ -0.46
VPS13C-208ENST00000559119 CD2BP2O95400 341 aaKnown RBP12.16□□□□□ -0.46
VPS13C-208ENST00000559119 ZBTB24O43167 697 aaPredicted RBP12.15□□□□□ -0.46
VPS13C-208ENST00000559119 DGAT1O75907 488 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms