RNA–Protein interactions for RNA: ENST00000558768.5

TRPM1-208, Transcript of transient receptor potential cation channel subfamily M member 1, human

APPRIS ALT2 TSL 1 (best)

Gene TRPM1, Length 4,581 nt, Biotype protein coding, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
TRPM1-208	ENST00000558768	MYOM3	Q5VTT5	1437 aa		11.8	□□□□□ -0.52
TRPM1-208	ENST00000558768	TSPY4	P0CV99	314 aa		11.8	□□□□□ -0.52
TRPM1-208	ENST00000558768	TSPY10	P0CW01	314 aa		11.8	□□□□□ -0.52
TRPM1-208	ENST00000558768	NBPF8	Q3BBV2	869 aa		11.8	□□□□□ -0.52
TRPM1-208	ENST00000558768	CGNL1	Q0VF96	1302 aa		11.8	□□□□□ -0.52
TRPM1-208	ENST00000558768	CHGA	P10645	457 aa	Known RBP	11.8	□□□□□ -0.52
TRPM1-208	ENST00000558768	TMF1	P82094	1093 aa		11.8	□□□□□ -0.52
TRPM1-208	ENST00000558768	DCAF11	Q8TEB1	546 aa		11.8	□□□□□ -0.52
TRPM1-208	ENST00000558768	KIAA0754	O94854	1291 aa		11.79	□□□□□ -0.52
TRPM1-208	ENST00000558768	IPO7	O95373	1038 aa	Known RBP	11.79	□□□□□ -0.52
TRPM1-208	ENST00000558768	PKD2	Q13563	968 aa		11.79	□□□□□ -0.52
TRPM1-208	ENST00000558768	INCENP	Q9NQS7	918 aa		11.79	□□□□□ -0.52
TRPM1-208	ENST00000558768	TRAK2	O60296	914 aa		11.79	□□□□□ -0.52
TRPM1-208	ENST00000558768	CDCA7L	Q96GN5	454 aa		11.79	□□□□□ -0.52
TRPM1-208	ENST00000558768	NAIP	Q13075	1403 aa		11.79	□□□□□ -0.52
TRPM1-208	ENST00000558768	CASKIN1	Q8WXD9	1431 aa		11.79	□□□□□ -0.52
TRPM1-208	ENST00000558768	FOXD4L1	Q9NU39	408 aa		11.79	□□□□□ -0.52
TRPM1-208	ENST00000558768	CUX1	P39880	1505 aa		11.79	□□□□□ -0.52
TRPM1-208	ENST00000558768	NCOA2	Q15596	1464 aa		11.78	□□□□□ -0.52
TRPM1-208	ENST00000558768	ST20-MTHFS	A0A0A6YYL1	179 aa		11.78	□□□□□ -0.52
TRPM1-208	ENST00000558768	CGN	Q9P2M7	1197 aa	Known RBP	11.78	□□□□□ -0.52
TRPM1-208	ENST00000558768	EIF3A	Q14152	1382 aa	Known RBP	11.78	□□□□□ -0.52
TRPM1-208	ENST00000558768	UQCRHL	A0A096LP55	91 aa		11.77	□□□□□ -0.52
TRPM1-208	ENST00000558768	UQCRH	P07919	91 aa		11.77	□□□□□ -0.52
TRPM1-208	ENST00000558768	FYCO1	Q9BQS8	1478 aa		11.77	□□□□□ -0.52
TRPM1-208	ENST00000558768	SSR1	P43307	286 aa	Known RBP	11.77	□□□□□ -0.52
TRPM1-208	ENST00000558768	GOLGA6L7	A0A1B0GV03	622 aa		11.77	□□□□□ -0.53
TRPM1-208	ENST00000558768	MIA2	Q96PC5	1412 aa		11.76	□□□□□ -0.53
TRPM1-208	ENST00000558768	CAVIN1	Q6NZI2	390 aa	Known RBP	11.76	□□□□□ -0.53
TRPM1-208	ENST00000558768	MCM4	P33991	863 aa		11.76	□□□□□ -0.53
TRPM1-208	ENST00000558768	NUCB2	P80303	420 aa		11.76	□□□□□ -0.53
TRPM1-208	ENST00000558768	RSPH4A	Q5TD94	716 aa		11.76	□□□□□ -0.53
TRPM1-208	ENST00000558768	CFDP1	Q9UEE9	299 aa	Predicted RBP	11.76	□□□□□ -0.53
TRPM1-208	ENST00000558768	NEXN	Q0ZGT2	675 aa		11.75	□□□□□ -0.53
TRPM1-208	ENST00000558768	SF3A1	Q15459	793 aa	Known RBP	11.75	□□□□□ -0.53
TRPM1-208	ENST00000558768	DNAJC2	Q99543	621 aa	Known RBP	11.75	□□□□□ -0.53
TRPM1-208	ENST00000558768	HMGB1	P09429	215 aa	Known RBP	11.74	□□□□□ -0.53
TRPM1-208	ENST00000558768	RGL3	Q3MIN7	710 aa		11.74	□□□□□ -0.53
TRPM1-208	ENST00000558768	GRPEL1	Q9HAV7	217 aa		11.74	□□□□□ -0.53
TRPM1-208	ENST00000558768	GPATCH11	Q8N954	259 aa		11.74	□□□□□ -0.53
TRPM1-208	ENST00000558768	RRAGD	Q9NQL2	400 aa	Predicted RBP	11.74	□□□□□ -0.53
TRPM1-208	ENST00000558768	ZRSR2	Q15696	482 aa	Known RBP	11.73	□□□□□ -0.53
TRPM1-208	ENST00000558768	ZHX1	Q9UKY1	873 aa	Predicted RBP	11.73	□□□□□ -0.53
TRPM1-208	ENST00000558768	CENPJ	Q9HC77	1338 aa	Predicted RBP	11.72	□□□□□ -0.53
TRPM1-208	ENST00000558768	PES1	O00541	588 aa	Known RBP	11.72	□□□□□ -0.53
TRPM1-208	ENST00000558768	EIF3J	O75822	258 aa	Known RBP	11.72	□□□□□ -0.53
TRPM1-208	ENST00000558768	CCDC112	Q8NEF3	446 aa		11.72	□□□□□ -0.53
TRPM1-208	ENST00000558768	TPD52L1	Q16890	204 aa	Predicted RBP	11.71	□□□□□ -0.53
TRPM1-208	ENST00000558768	SKAP1	Q86WV1	359 aa		11.71	□□□□□ -0.53
TRPM1-208	ENST00000558768	ERICH4	A6NGS2	130 aa		11.71	□□□□□ -0.54
TRPM1-208	ENST00000558768		E9PSI1	815 aa		11.71	□□□□□ -0.54
TRPM1-208	ENST00000558768	NGEF	Q8N5V2	710 aa		11.71	□□□□□ -0.54
TRPM1-208	ENST00000558768	CHMP4C	Q96CF2	233 aa		11.71	□□□□□ -0.54
TRPM1-208	ENST00000558768	AXDND1	Q5T1B0	1012 aa	Predicted RBP	11.7	□□□□□ -0.54
TRPM1-208	ENST00000558768	IPO4	Q8TEX9	1081 aa	Known RBP	11.7	□□□□□ -0.54
TRPM1-208	ENST00000558768	XRCC6	P12956	609 aa	Known RBP eCLIP	11.7	□□□□□ -0.54
TRPM1-208	ENST00000558768	TIGD1	Q96MW7	591 aa		11.7	□□□□□ -0.54
TRPM1-208	ENST00000558768	CT47B1	P0C2W7	299 aa	Predicted RBP	11.7	□□□□□ -0.54
TRPM1-208	ENST00000558768	FOXD4L5	Q5VV16	416 aa	Predicted RBP	11.7	□□□□□ -0.54
TRPM1-208	ENST00000558768	ZSCAN30	Q86W11	494 aa		11.7	□□□□□ -0.54
TRPM1-208	ENST00000558768	FOXD4L4	Q8WXT5	416 aa	Predicted RBP	11.7	□□□□□ -0.54
TRPM1-208	ENST00000558768	FAM107B	Q9H098	131 aa		11.7	□□□□□ -0.54
TRPM1-208	ENST00000558768	PRDM10	Q9NQV6	1147 aa		11.69	□□□□□ -0.54
TRPM1-208	ENST00000558768	CLUAP1	Q96AJ1	413 aa		11.69	□□□□□ -0.54
TRPM1-208	ENST00000558768	CCP110	O43303	1012 aa		11.69	□□□□□ -0.54
TRPM1-208	ENST00000558768	CLSTN1	O94985	981 aa		11.69	□□□□□ -0.54
TRPM1-208	ENST00000558768	MBD3	O95983	291 aa		11.69	□□□□□ -0.54
TRPM1-208	ENST00000558768	STAG3	Q9UJ98	1225 aa		11.69	□□□□□ -0.54
TRPM1-208	ENST00000558768	GTF2A1	P52655	376 aa	Predicted RBP	11.69	□□□□□ -0.54
TRPM1-208	ENST00000558768	CREBRF	Q8IUR6	639 aa		11.68	□□□□□ -0.54
TRPM1-208	ENST00000558768	C22orf23	Q9BZE7	217 aa		11.68	□□□□□ -0.54
TRPM1-208	ENST00000558768	PANK3	Q9H999	370 aa		11.68	□□□□□ -0.54
TRPM1-208	ENST00000558768	PTPN23	Q9H3S7	1636 aa		11.68	□□□□□ -0.54
TRPM1-208	ENST00000558768	COG6	Q9Y2V7	657 aa		11.68	□□□□□ -0.54
TRPM1-208	ENST00000558768	FGD5	Q6ZNL6	1462 aa		11.68	□□□□□ -0.54
TRPM1-208	ENST00000558768	C8orf34	Q49A92	452 aa		11.68	□□□□□ -0.54
TRPM1-208	ENST00000558768	CAGE1	Q8TC20	777 aa		11.68	□□□□□ -0.54
TRPM1-208	ENST00000558768	ITPRIP	Q8IWB1	547 aa		11.67	□□□□□ -0.54
TRPM1-208	ENST00000558768	ANKRD20A12P	Q8NF67	263 aa		11.67	□□□□□ -0.54
TRPM1-208	ENST00000558768	ERLIN1	O75477	346 aa		11.67	□□□□□ -0.54
TRPM1-208	ENST00000558768	RNF20	Q5VTR2	975 aa		11.67	□□□□□ -0.54
TRPM1-208	ENST00000558768	CTR9	Q6PD62	1173 aa		11.67	□□□□□ -0.54
TRPM1-208	ENST00000558768	LETM1	O95202	739 aa	Predicted RBP	11.67	□□□□□ -0.54
TRPM1-208	ENST00000558768	CBX1	P83916	185 aa		11.67	□□□□□ -0.54
TRPM1-208	ENST00000558768	SASS6	Q6UVJ0	657 aa		11.67	□□□□□ -0.54
TRPM1-208	ENST00000558768	PDE3A	Q14432	1141 aa		11.66	□□□□□ -0.54
TRPM1-208	ENST00000558768	DHX8	Q14562	1220 aa	Known RBP	11.66	□□□□□ -0.54
TRPM1-208	ENST00000558768	EFCAB5	A4FU69	1503 aa		11.66	□□□□□ -0.54
TRPM1-208	ENST00000558768	GRWD1	Q9BQ67	446 aa	Known RBP eCLIP	11.66	□□□□□ -0.54
TRPM1-208	ENST00000558768	NUP155	O75694	1391 aa		11.66	□□□□□ -0.54
TRPM1-208	ENST00000558768	ANKRD30B	Q9BXX2	1392 aa		11.65	□□□□□ -0.54
TRPM1-208	ENST00000558768	ANKRD30A	Q9BXX3	1397 aa		11.65	□□□□□ -0.54
TRPM1-208	ENST00000558768	PAIP2	Q9BPZ3	127 aa	Known RBP	11.65	□□□□□ -0.54
TRPM1-208	ENST00000558768	PLEKHH2	Q8IVE3	1493 aa		11.65	□□□□□ -0.54
TRPM1-208	ENST00000558768	CLGN	O14967	610 aa		11.65	□□□□□ -0.54
TRPM1-208	ENST00000558768	AQR	O60306	1485 aa	Known RBP eCLIP	11.65	□□□□□ -0.54
TRPM1-208	ENST00000558768	APBB1	O00213	710 aa		11.65	□□□□□ -0.55
TRPM1-208	ENST00000558768	C20orf194	Q5TEA3	1177 aa		11.65	□□□□□ -0.55
TRPM1-208	ENST00000558768	NOL8	Q76FK4	1167 aa	Known RBP	11.65	□□□□□ -0.55
TRPM1-208	ENST00000558768	GOLGA6L10	A6NI86	522 aa		11.64	□□□□□ -0.55

Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms