RNA–Protein interactions for RNA: ENST00000558088.1

VPS13C-205, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 549 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-205ENST00000558088 V9GY48 417 aaPredicted RBP7.84□□□□□ -1.15
VPS13C-205ENST00000558088 SEMA3EO15041 775 aa7.83□□□□□ -1.16
VPS13C-205ENST00000558088 GFRA3O60609 400 aa7.83□□□□□ -1.16
VPS13C-205ENST00000558088 ZPR1O75312 459 aa7.83□□□□□ -1.16
VPS13C-205ENST00000558088 RCCD1A6NED2 376 aa7.82□□□□□ -1.16
VPS13C-205ENST00000558088 PLCB2Q00722 1185 aa7.82□□□□□ -1.16
VPS13C-205ENST00000558088 NKX2-3Q8TAU0 364 aa7.82□□□□□ -1.16
VPS13C-205ENST00000558088 TMUB1Q9BVT8 246 aa7.82□□□□□ -1.16
VPS13C-205ENST00000558088 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP7.81□□□□□ -1.16
VPS13C-205ENST00000558088 OATP04181 439 aa7.81□□□□□ -1.16
VPS13C-205ENST00000558088 RSPH4AQ5TD94 716 aa7.81□□□□□ -1.16
VPS13C-205ENST00000558088 CFHP08603 1231 aa7.8□□□□□ -1.16
VPS13C-205ENST00000558088 HIC1Q14526 733 aa7.79□□□□□ -1.16
VPS13C-205ENST00000558088 FAM161AQ3B820 660 aa7.79□□□□□ -1.16
VPS13C-205ENST00000558088 BLOC1S3Q6QNY0 202 aa7.79□□□□□ -1.16
VPS13C-205ENST00000558088 NRG2O14511 850 aaPredicted RBP7.78□□□□□ -1.16
VPS13C-205ENST00000558088 ACTN4O43707 911 aaKnown RBP7.78□□□□□ -1.16
VPS13C-205ENST00000558088 NR1I2O75469 434 aa7.77□□□□□ -1.17
VPS13C-205ENST00000558088 TESPA1A2RU30 521 aaPredicted RBP7.76□□□□□ -1.17
VPS13C-205ENST00000558088 PXYLP1Q8TE99 480 aa7.76□□□□□ -1.17
VPS13C-205ENST00000558088 TRAF7Q6Q0C0 670 aa7.75□□□□□ -1.17
VPS13C-205ENST00000558088 PDZRN3Q9UPQ7 1066 aa7.75□□□□□ -1.17
VPS13C-205ENST00000558088 GNPATO15228 680 aa7.74□□□□□ -1.17
VPS13C-205ENST00000558088 TLL1O43897 1013 aa7.74□□□□□ -1.17
VPS13C-205ENST00000558088 RBM26Q5T8P6 1007 aaKnown RBP7.74□□□□□ -1.17
VPS13C-205ENST00000558088 METTL3Q86U44 580 aaKnown RBP7.74□□□□□ -1.17
VPS13C-205ENST00000558088 RNF223E7ERA6 249 aa7.73□□□□□ -1.17
VPS13C-205ENST00000558088 HAP1P54257 671 aaPredicted RBP7.73□□□□□ -1.17
VPS13C-205ENST00000558088 SLC10A3P09131 477 aa7.72□□□□□ -1.17
VPS13C-205ENST00000558088 SLC19A1P41440 591 aa7.72□□□□□ -1.17
VPS13C-205ENST00000558088 ANKLE1Q8NAG6 615 aa7.72□□□□□ -1.17
VPS13C-205ENST00000558088 ADH1BP00325 375 aa7.71□□□□□ -1.18
VPS13C-205ENST00000558088 RDH13Q8NBN7 331 aa7.71□□□□□ -1.18
VPS13C-205ENST00000558088 TULP1O00294 542 aaPredicted RBP7.7□□□□□ -1.18
VPS13C-205ENST00000558088 S1PR4O95977 384 aa7.7□□□□□ -1.18
VPS13C-205ENST00000558088 SULF1Q8IWU6 871 aa7.69□□□□□ -1.18
VPS13C-205ENST00000558088 SLC6A16Q9GZN6 736 aa7.69□□□□□ -1.18
VPS13C-205ENST00000558088 DAXXQ9UER7 740 aaPredicted RBP7.69□□□□□ -1.18
VPS13C-205ENST00000558088 GPIHBP1Q8IV16 184 aa7.68□□□□□ -1.18
VPS13C-205ENST00000558088 DDX11L8A8MPP1 907 aa7.67□□□□□ -1.18
VPS13C-205ENST00000558088 SCUBE3Q8IX30 993 aa7.67□□□□□ -1.18
VPS13C-205ENST00000558088 FECHP22830 423 aa7.66□□□□□ -1.18
VPS13C-205ENST00000558088 PUS10Q3MIT2 529 aaKnown RBP7.66□□□□□ -1.18
VPS13C-205ENST00000558088 SPRYD7Q5W111 196 aa7.66□□□□□ -1.18
VPS13C-205ENST00000558088 ZNF598Q86UK7 904 aaKnown RBP7.66□□□□□ -1.18
VPS13C-205ENST00000558088 SPSB2Q99619 263 aa7.66□□□□□ -1.18
VPS13C-205ENST00000558088 PPEF1O14829 653 aaPredicted RBP7.65□□□□□ -1.18
VPS13C-205ENST00000558088 PKDCCQ504Y2 493 aa7.65□□□□□ -1.18
VPS13C-205ENST00000558088 ZNF697Q5TEC3 545 aa7.65□□□□□ -1.18
VPS13C-205ENST00000558088 GPR37O15354 613 aa7.64□□□□□ -1.19
VPS13C-205ENST00000558088 LCE2BO14633 110 aa7.63□□□□□ -1.19
VPS13C-205ENST00000558088 ATP6V1AP38606 617 aa7.63□□□□□ -1.19
VPS13C-205ENST00000558088 GRIPAP1Q4V328 841 aa7.63□□□□□ -1.19
VPS13C-205ENST00000558088 PRR20EP86478 221 aa7.62□□□□□ -1.19
VPS13C-205ENST00000558088 PRR20CP86479 221 aa7.62□□□□□ -1.19
VPS13C-205ENST00000558088 PRR20DP86480 221 aa7.62□□□□□ -1.19
VPS13C-205ENST00000558088 PRR20BP86481 221 aa7.62□□□□□ -1.19
VPS13C-205ENST00000558088 PRR20AP86496 221 aa7.62□□□□□ -1.19
VPS13C-205ENST00000558088 FUT2Q10981 343 aa7.62□□□□□ -1.19
VPS13C-205ENST00000558088 LIAT1Q6ZQX7 453 aa7.62□□□□□ -1.19
VPS13C-205ENST00000558088 DGAT1O75907 488 aa7.61□□□□□ -1.19
VPS13C-205ENST00000558088 FMNL1O95466 1100 aaPredicted RBP7.61□□□□□ -1.19
VPS13C-205ENST00000558088 GCGRP47871 477 aa7.61□□□□□ -1.19
VPS13C-205ENST00000558088 MORN1Q5T089 497 aa7.61□□□□□ -1.19
VPS13C-205ENST00000558088 ZNF787Q6DD87 383 aa7.61□□□□□ -1.19
VPS13C-205ENST00000558088 NLRP7Q8WX94 980 aa7.61□□□□□ -1.19
VPS13C-205ENST00000558088 TRIM67Q6ZTA4 783 aa7.6□□□□□ -1.19
VPS13C-205ENST00000558088 EMID1Q96A84 441 aaPredicted RBP7.6□□□□□ -1.19
VPS13C-205ENST00000558088 FAM187AA6NFU0 413 aa7.59□□□□□ -1.19
VPS13C-205ENST00000558088 TNFRSF10AO00220 468 aa7.59□□□□□ -1.19
VPS13C-205ENST00000558088 CD2BP2O95400 341 aaKnown RBP7.58□□□□□ -1.2
VPS13C-205ENST00000558088 LMOD2Q6P5Q4 547 aa7.58□□□□□ -1.2
VPS13C-205ENST00000558088 KDM2AQ9Y2K7 1162 aa7.58□□□□□ -1.2
VPS13C-205ENST00000558088 SLC27A5Q9Y2P5 690 aa7.58□□□□□ -1.2
VPS13C-205ENST00000558088 SALL2Q9Y467 1007 aaPredicted RBP7.58□□□□□ -1.2
VPS13C-205ENST00000558088 RPIAP49247 311 aa7.57□□□□□ -1.2
VPS13C-205ENST00000558088 MAP2K5Q13163 448 aa7.57□□□□□ -1.2
VPS13C-205ENST00000558088 Q3C1V9 767 aa7.57□□□□□ -1.2
VPS13C-205ENST00000558088 VSIG10Q8N0Z9 540 aa7.57□□□□□ -1.2
VPS13C-205ENST00000558088 PHOX2BQ99453 314 aa7.57□□□□□ -1.2
VPS13C-205ENST00000558088 FCF1Q9Y324 198 aaKnown RBP7.57□□□□□ -1.2
VPS13C-205ENST00000558088 ZBTB24O43167 697 aaPredicted RBP7.56□□□□□ -1.2
VPS13C-205ENST00000558088 FOXC1Q12948 553 aa7.56□□□□□ -1.2
VPS13C-205ENST00000558088 PLA2G2CQ5R387 149 aa7.56□□□□□ -1.2
VPS13C-205ENST00000558088 THAP11Q96EK4 314 aa7.56□□□□□ -1.2
VPS13C-205ENST00000558088 GDF9O60383 454 aa7.55□□□□□ -1.2
VPS13C-205ENST00000558088 MYT1Q01538 1121 aa7.54□□□□□ -1.2
VPS13C-205ENST00000558088 BRICD5Q6PL45 260 aa7.54□□□□□ -1.2
VPS13C-205ENST00000558088 MSS51Q4VC12 460 aa7.53□□□□□ -1.2
VPS13C-205ENST00000558088 FAM160A2Q8N612 972 aaPredicted RBP7.53□□□□□ -1.2
VPS13C-205ENST00000558088 MINK1Q8N4C8 1332 aaPredicted RBP7.52□□□□□ -1.2
VPS13C-205ENST00000558088 IRF6O14896 467 aa7.52□□□□□ -1.21
VPS13C-205ENST00000558088 KDM4AO75164 1064 aa7.52□□□□□ -1.21
VPS13C-205ENST00000558088 USP46P62068 366 aa7.52□□□□□ -1.21
VPS13C-205ENST00000558088 MDM2Q00987 491 aaPredicted RBP7.52□□□□□ -1.21
VPS13C-205ENST00000558088 CYP4X1Q8N118 509 aa7.52□□□□□ -1.21
VPS13C-205ENST00000558088 KRI1Q8N9T8 703 aaKnown RBP7.52□□□□□ -1.21
VPS13C-205ENST00000558088 CD46P15529 392 aa7.51□□□□□ -1.21
VPS13C-205ENST00000558088 RNF19BQ6ZMZ0 732 aa7.51□□□□□ -1.21
VPS13C-205ENST00000558088 PRDM9Q9NQV7 894 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms