RNA–Protein interactions for RNA: ENST00000557529.1

SHMT2-233, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,369 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-233ENST00000557529 KIF7Q2M1P5 1343 aa17.39■□□□□ 0.37
SHMT2-233ENST00000557529 C11orf95C9JLR9 678 aaPredicted RBP17.39■□□□□ 0.37
SHMT2-233ENST00000557529 SPATA31D1Q6ZQQ2 1576 aa17.38■□□□□ 0.37
SHMT2-233ENST00000557529 ST20-MTHFSA0A0A6YYL1 179 aa17.38■□□□□ 0.37
SHMT2-233ENST00000557529 FBXO31Q5XUX0 539 aaPredicted RBP17.37■□□□□ 0.37
SHMT2-233ENST00000557529 PPLO60437 1756 aa17.36■□□□□ 0.37
SHMT2-233ENST00000557529 ADGRF5Q8IZF2 1346 aa17.36■□□□□ 0.37
SHMT2-233ENST00000557529 ZMYM3Q14202 1370 aa17.36■□□□□ 0.37
SHMT2-233ENST00000557529 VGFO15240 615 aaPredicted RBP17.35■□□□□ 0.37
SHMT2-233ENST00000557529 ANP32CO43423 234 aa17.35■□□□□ 0.37
SHMT2-233ENST00000557529 SCAF11Q99590 1463 aaKnown RBP17.35■□□□□ 0.37
SHMT2-233ENST00000557529 ZFYVE9O95405 1425 aa17.34■□□□□ 0.37
SHMT2-233ENST00000557529 TMEM131LA2VDJ0 1609 aa17.34■□□□□ 0.37
SHMT2-233ENST00000557529 PIK3C2GO75747 1445 aa17.33■□□□□ 0.37
SHMT2-233ENST00000557529 NEXMIFQ5QGS0 1516 aa17.33■□□□□ 0.36
SHMT2-233ENST00000557529 EIF3AQ14152 1382 aaKnown RBP17.33■□□□□ 0.36
SHMT2-233ENST00000557529 IQGAP1P46940 1657 aa17.31■□□□□ 0.36
SHMT2-233ENST00000557529 SETBP1Q9Y6X0 1596 aa17.31■□□□□ 0.36
SHMT2-233ENST00000557529 CFAP70Q5T0N1 1121 aa17.3■□□□□ 0.36
SHMT2-233ENST00000557529 STAG3Q9UJ98 1225 aa17.3■□□□□ 0.36
SHMT2-233ENST00000557529 C14orf93Q9H972 538 aaKnown RBP17.29■□□□□ 0.36
SHMT2-233ENST00000557529 TESK2Q96S53 571 aa17.28■□□□□ 0.36
SHMT2-233ENST00000557529 SLC24A1O60721 1099 aa17.28■□□□□ 0.36
SHMT2-233ENST00000557529 TNRQ92752 1358 aa17.27■□□□□ 0.36
SHMT2-233ENST00000557529 CCER2I3L3R5 266 aa17.27■□□□□ 0.35
SHMT2-233ENST00000557529 TMF1P82094 1093 aa17.27■□□□□ 0.35
SHMT2-233ENST00000557529 A2ML1A8K2U0 1454 aa17.26■□□□□ 0.35
SHMT2-233ENST00000557529 POLR3GLQ9BT43 218 aa17.25■□□□□ 0.35
SHMT2-233ENST00000557529 MYO5BQ9ULV0 1848 aa17.24■□□□□ 0.35
SHMT2-233ENST00000557529 CDCA8Q53HL2 280 aa17.24■□□□□ 0.35
SHMT2-233ENST00000557529 ADGRB1O14514 1584 aa17.23■□□□□ 0.35
SHMT2-233ENST00000557529 KDM5AP29375 1690 aaKnown RBP17.22■□□□□ 0.35
SHMT2-233ENST00000557529 DISP3Q9P2K9 1392 aa17.21■□□□□ 0.35
SHMT2-233ENST00000557529 FER1L4A9Z1Z3 1794 aa17.21■□□□□ 0.35
SHMT2-233ENST00000557529 NUTM2DQ5VT03 806 aaPredicted RBP17.21■□□□□ 0.35
SHMT2-233ENST00000557529 ABCF1Q8NE71 845 aaKnown RBP eCLIP17.21■□□□□ 0.35
SHMT2-233ENST00000557529 NLRP1Q9C000 1473 aa17.21■□□□□ 0.35
SHMT2-233ENST00000557529 RIMS2Q9UQ26 1411 aa17.21■□□□□ 0.35
SHMT2-233ENST00000557529 HDGFP51858 240 aaKnown RBP17.2■□□□□ 0.34
SHMT2-233ENST00000557529 SBNO2Q9Y2G9 1366 aa17.2■□□□□ 0.34
SHMT2-233ENST00000557529 MYO3AQ8NEV4 1616 aa17.19■□□□□ 0.34
SHMT2-233ENST00000557529 CENPBP07199 599 aaPredicted RBP17.18■□□□□ 0.34
SHMT2-233ENST00000557529 CENPJQ9HC77 1338 aaPredicted RBP17.17■□□□□ 0.34
SHMT2-233ENST00000557529 C3P01024 1663 aa17.17■□□□□ 0.34
SHMT2-233ENST00000557529 YTHDC1Q96MU7 727 aaKnown RBP17.15■□□□□ 0.34
SHMT2-233ENST00000557529 PRKRIP1Q9H875 184 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-233ENST00000557529 CEBPAP49715 358 aaPredicted RBP17.15■□□□□ 0.34
SHMT2-233ENST00000557529 TMEM132EQ6IEE7 984 aa17.15■□□□□ 0.34
SHMT2-233ENST00000557529 TRAK1Q9UPV9 953 aa17.15■□□□□ 0.34
SHMT2-233ENST00000557529 TMEM2Q9UHN6 1383 aa17.13■□□□□ 0.33
SHMT2-233ENST00000557529 UBR1Q8IWV7 1749 aa17.13■□□□□ 0.33
SHMT2-233ENST00000557529 ALKQ9UM73 1620 aa17.13■□□□□ 0.33
SHMT2-233ENST00000557529 ASXL1Q8IXJ9 1541 aa17.12■□□□□ 0.33
SHMT2-233ENST00000557529 KTN1Q86UP2 1357 aaKnown RBP17.11■□□□□ 0.33
SHMT2-233ENST00000557529 YTHDC2Q9H6S0 1430 aaKnown RBP17.09■□□□□ 0.33
SHMT2-233ENST00000557529 ARHGEF28Q8N1W1 1705 aaKnown RBP17.09■□□□□ 0.33
SHMT2-233ENST00000557529 ADAMTSL3P82987 1691 aa17.08■□□□□ 0.32
SHMT2-233ENST00000557529 QRICH2Q9H0J4 1663 aa17.08■□□□□ 0.32
SHMT2-233ENST00000557529 PUS7Q96PZ0 661 aaKnown RBP17.07■□□□□ 0.32
SHMT2-233ENST00000557529 PANK3Q9H999 370 aa17.07■□□□□ 0.32
SHMT2-233ENST00000557529 RIMS1Q86UR5 1692 aaKnown RBP17.07■□□□□ 0.32
SHMT2-233ENST00000557529 RALBP1Q15311 655 aa17.06■□□□□ 0.32
SHMT2-233ENST00000557529 LRPPRCP42704 1394 aaKnown RBP17.06■□□□□ 0.32
SHMT2-233ENST00000557529 PER1O15534 1290 aaPredicted RBP17.05■□□□□ 0.32
SHMT2-233ENST00000557529 THEMISQ8N1K5 641 aaPredicted RBP17.05■□□□□ 0.32
SHMT2-233ENST00000557529 STK26Q9P289 416 aa17.05■□□□□ 0.32
SHMT2-233ENST00000557529 EID1Q9Y6B2 187 aa17.05■□□□□ 0.32
SHMT2-233ENST00000557529 PTPRMP28827 1452 aa17.05■□□□□ 0.32
SHMT2-233ENST00000557529 SLIT1O75093 1534 aa17.05■□□□□ 0.32
SHMT2-233ENST00000557529 DLC1Q96QB1 1528 aa17.05■□□□□ 0.32
SHMT2-233ENST00000557529 PLPPR3Q6T4P5 718 aa17.04■□□□□ 0.32
SHMT2-233ENST00000557529 EVC2Q86UK5 1308 aa17.04■□□□□ 0.32
SHMT2-233ENST00000557529 PLEKHG1Q9ULL1 1385 aa17.04■□□□□ 0.32
SHMT2-233ENST00000557529 ARHGAP23Q9P227 1491 aa17.04■□□□□ 0.32
SHMT2-233ENST00000557529 NRXN3Q9Y4C0 1643 aa17.04■□□□□ 0.32
SHMT2-233ENST00000557529 SETD1AO15047 1707 aaKnown RBP17.04■□□□□ 0.32
SHMT2-233ENST00000557529 ABCC11Q96J66 1382 aa17.02■□□□□ 0.32
SHMT2-233ENST00000557529 SENP3Q9H4L4 574 aaPredicted RBP17.02■□□□□ 0.32
SHMT2-233ENST00000557529 TXNDC2Q86VQ3 553 aa17.02■□□□□ 0.31
SHMT2-233ENST00000557529 BCANQ96GW7 911 aa17.02■□□□□ 0.31
SHMT2-233ENST00000557529 POGKQ9P215 609 aa17.02■□□□□ 0.31
SHMT2-233ENST00000557529 MYOM1P52179 1685 aa17.01■□□□□ 0.31
SHMT2-233ENST00000557529 PRAM1Q96QH2 718 aa17.01■□□□□ 0.31
SHMT2-233ENST00000557529 MRS2Q9HD23 443 aa17.01■□□□□ 0.31
SHMT2-233ENST00000557529 KNSTRNQ9Y448 316 aa17.01■□□□□ 0.31
SHMT2-233ENST00000557529 PARD3Q8TEW0 1356 aa17■□□□□ 0.31
SHMT2-233ENST00000557529 LTKP29376 864 aa17■□□□□ 0.31
SHMT2-233ENST00000557529 SIRT1Q96EB6 747 aa17■□□□□ 0.31
SHMT2-233ENST00000557529 CEP170BQ9Y4F5 1589 aaPredicted RBP16.99■□□□□ 0.31
SHMT2-233ENST00000557529 MYBBP1AQ9BQG0 1328 aaKnown RBP16.99■□□□□ 0.31
SHMT2-233ENST00000557529 TULP4Q9NRJ4 1543 aa16.99■□□□□ 0.31
SHMT2-233ENST00000557529 TECPR2O15040 1411 aa16.98■□□□□ 0.31
SHMT2-233ENST00000557529 ADAMTS13Q76LX8 1427 aa16.98■□□□□ 0.31
SHMT2-233ENST00000557529 METP08581 1390 aa16.98■□□□□ 0.31
SHMT2-233ENST00000557529 NPC1L1Q9UHC9 1359 aa16.97■□□□□ 0.31
SHMT2-233ENST00000557529 FAM135BQ49AJ0 1406 aa16.97■□□□□ 0.31
SHMT2-233ENST00000557529 NINLQ9Y2I6 1382 aa16.96■□□□□ 0.31
SHMT2-233ENST00000557529 CNGB1Q14028 1251 aaPredicted RBP16.96■□□□□ 0.31
SHMT2-233ENST00000557529 SAFB2Q14151 953 aaKnown RBP eCLIP16.96■□□□□ 0.31
SHMT2-233ENST00000557529 KNDC1Q76NI1 1749 aa16.96■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 68.9 ms