RNA–Protein interactions for RNA: ENST00000556956.1

SLIRP-208, Transcript of SRA stem-loop interacting RNA binding protein, humanhuman

TSL 2

Gene SLIRP, Length 450 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SLIRP-208ENST00000556956 TOR4AQ9NXH8 423 aa6.37□□□□□ -1.39
SLIRP-208ENST00000556956 FAM198AQ9UFP1 575 aa6.37□□□□□ -1.39
SLIRP-208ENST00000556956 S1PR4O95977 384 aa6.36□□□□□ -1.39
SLIRP-208ENST00000556956 NCKAP5LQ9HCH0 1330 aa6.35□□□□□ -1.39
SLIRP-208ENST00000556956 SLC16A10Q8TF71 515 aa6.35□□□□□ -1.39
SLIRP-208ENST00000556956 PSMG3-AS1Q96PY0 264 aa6.35□□□□□ -1.39
SLIRP-208ENST00000556956 EMILIN3Q9NT22 766 aa6.35□□□□□ -1.39
SLIRP-208ENST00000556956 LMOD2Q6P5Q4 547 aa6.32□□□□□ -1.4
SLIRP-208ENST00000556956 BLOC1S3Q6QNY0 202 aa6.32□□□□□ -1.4
SLIRP-208ENST00000556956 EPAS1Q99814 870 aa6.32□□□□□ -1.4
SLIRP-208ENST00000556956 ERBB4Q15303 1308 aa6.31□□□□□ -1.4
SLIRP-208ENST00000556956 TMEM151AQ8N4L1 468 aa6.31□□□□□ -1.4
SLIRP-208ENST00000556956 VEGFBP49765 207 aa6.3□□□□□ -1.4
SLIRP-208ENST00000556956 TSR1Q2NL82 804 aaKnown RBP6.3□□□□□ -1.4
SLIRP-208ENST00000556956 IRF7Q92985 503 aa6.3□□□□□ -1.4
SLIRP-208ENST00000556956 TATDN2Q93075 761 aa6.3□□□□□ -1.4
SLIRP-208ENST00000556956 SENP2Q9HC62 589 aa6.3□□□□□ -1.4
SLIRP-208ENST00000556956 NXF1Q9UBU9 619 aaKnown RBP6.3□□□□□ -1.4
SLIRP-208ENST00000556956 GDF11O95390 407 aa6.29□□□□□ -1.4
SLIRP-208ENST00000556956 CYP4X1Q8N118 509 aa6.29□□□□□ -1.4
SLIRP-208ENST00000556956 PNMA3Q9UL41 463 aa6.29□□□□□ -1.4
SLIRP-208ENST00000556956 PCDHB3Q9Y5E6 796 aa6.29□□□□□ -1.4
SLIRP-208ENST00000556956 RASSF7Q02833 373 aa6.28□□□□□ -1.4
SLIRP-208ENST00000556956 CDCA7LQ96GN5 454 aa6.28□□□□□ -1.4
SLIRP-208ENST00000556956 RGL2O15211 777 aa6.26□□□□□ -1.41
SLIRP-208ENST00000556956 PDE4AP27815 886 aa6.26□□□□□ -1.41
SLIRP-208ENST00000556956 HDGFP51858 240 aaKnown RBP6.25□□□□□ -1.41
SLIRP-208ENST00000556956 NBPF26B4DH59 902 aa6.24□□□□□ -1.41
SLIRP-208ENST00000556956 H3BM21 787 aa6.24□□□□□ -1.41
SLIRP-208ENST00000556956 PRSS12P56730 875 aa6.24□□□□□ -1.41
SLIRP-208ENST00000556956 SWT1Q5T5J6 900 aaKnown RBP6.24□□□□□ -1.41
SLIRP-208ENST00000556956 GPAT2Q6NUI2 795 aa6.23□□□□□ -1.41
SLIRP-208ENST00000556956 DDX12PQ92771 950 aa6.23□□□□□ -1.41
SLIRP-208ENST00000556956 KIFC2Q96AC6 838 aa6.23□□□□□ -1.41
SLIRP-208ENST00000556956 DDX27Q96GQ7 796 aaKnown RBP6.23□□□□□ -1.41
SLIRP-208ENST00000556956 LARP6Q9BRS8 491 aaKnown RBP6.23□□□□□ -1.41
SLIRP-208ENST00000556956 SMPD1P17405 629 aa6.22□□□□□ -1.41
SLIRP-208ENST00000556956 NUDT18Q6ZVK8 323 aa6.22□□□□□ -1.41
SLIRP-208ENST00000556956 NECTIN2Q92692 538 aa6.22□□□□□ -1.41
SLIRP-208ENST00000556956 TTC24A2A3L6 582 aaPredicted RBP6.21□□□□□ -1.42
SLIRP-208ENST00000556956 ECM2O94769 699 aaPredicted RBP6.21□□□□□ -1.42
SLIRP-208ENST00000556956 EN1Q05925 392 aaPredicted RBP6.21□□□□□ -1.42
SLIRP-208ENST00000556956 LCE3BQ5TA77 95 aa6.21□□□□□ -1.42
SLIRP-208ENST00000556956 NPAS3Q8IXF0 933 aa6.21□□□□□ -1.42
SLIRP-208ENST00000556956 MAP3K7O43318 606 aa6.2□□□□□ -1.42
SLIRP-208ENST00000556956 SLF2Q8IX21 1173 aa6.2□□□□□ -1.42
SLIRP-208ENST00000556956 ADH1BP00325 375 aa6.19□□□□□ -1.42
SLIRP-208ENST00000556956 MFSD10Q14728 455 aa6.18□□□□□ -1.42
SLIRP-208ENST00000556956 SLC6A16Q9GZN6 736 aa6.18□□□□□ -1.42
SLIRP-208ENST00000556956 KRTAP9-9Q9BYP9 154 aa6.17□□□□□ -1.42
SLIRP-208ENST00000556956 KRTAP9-4Q9BYQ2 154 aa6.17□□□□□ -1.42
SLIRP-208ENST00000556956 RPIAP49247 311 aa6.16□□□□□ -1.42
SLIRP-208ENST00000556956 NBR1Q14596 966 aa6.16□□□□□ -1.42
SLIRP-208ENST00000556956 PRR14Q9BWN1 585 aa6.16□□□□□ -1.42
SLIRP-208ENST00000556956 J3QL48 77 aa6.15□□□□□ -1.42
SLIRP-208ENST00000556956 HPS1Q92902 700 aa6.15□□□□□ -1.42
SLIRP-208ENST00000556956 ADAM23O75077 832 aa6.14□□□□□ -1.43
SLIRP-208ENST00000556956 DPYSL4O14531 572 aa6.13□□□□□ -1.43
SLIRP-208ENST00000556956 CD2BP2O95400 341 aaKnown RBP6.13□□□□□ -1.43
SLIRP-208ENST00000556956 IGHA1P01876 353 aa6.13□□□□□ -1.43
SLIRP-208ENST00000556956 KRTAP4-8A0A0G2JLE6 195 aa6.12□□□□□ -1.43
SLIRP-208ENST00000556956 PRIM1P49642 420 aaKnown RBP6.12□□□□□ -1.43
SLIRP-208ENST00000556956 SNIP1Q8TAD8 396 aaKnown RBP6.12□□□□□ -1.43
SLIRP-208ENST00000556956 KRTAP4-12Q9BQ66 201 aa6.12□□□□□ -1.43
SLIRP-208ENST00000556956 DNMT3AQ9Y6K1 912 aaPredicted RBP6.11□□□□□ -1.43
SLIRP-208ENST00000556956 ADAMTS8Q9UP79 889 aa6.1□□□□□ -1.43
SLIRP-208ENST00000556956 RNF225M0QZC1 329 aaPredicted RBP6.09□□□□□ -1.43
SLIRP-208ENST00000556956 BMP1P13497 986 aa6.09□□□□□ -1.43
SLIRP-208ENST00000556956 NKX1-1Q15270 411 aaPredicted RBP6.09□□□□□ -1.43
SLIRP-208ENST00000556956 CERKQ8TCT0 537 aa6.09□□□□□ -1.43
SLIRP-208ENST00000556956 FCF1Q9Y324 198 aaKnown RBP6.09□□□□□ -1.43
SLIRP-208ENST00000556956 ACTN4O43707 911 aaKnown RBP6.08□□□□□ -1.44
SLIRP-208ENST00000556956 TRIM46Q7Z4K8 759 aa6.08□□□□□ -1.44
SLIRP-208ENST00000556956 HS6ST3Q8IZP7 471 aa6.08□□□□□ -1.44
SLIRP-208ENST00000556956 Q8N3U1 123 aa6.08□□□□□ -1.44
SLIRP-208ENST00000556956 VSIG8P0DPA2 414 aa6.07□□□□□ -1.44
SLIRP-208ENST00000556956 WNT7AO00755 349 aa6.06□□□□□ -1.44
SLIRP-208ENST00000556956 SLC4A3P48751 1232 aa6.06□□□□□ -1.44
SLIRP-208ENST00000556956 PKD2Q13563 968 aa6.06□□□□□ -1.44
SLIRP-208ENST00000556956 CDHR5Q9HBB8 845 aa6.06□□□□□ -1.44
SLIRP-208ENST00000556956 IRS1P35568 1242 aa6.05□□□□□ -1.44
SLIRP-208ENST00000556956 MRGPRX2Q96LB1 330 aa6.05□□□□□ -1.44
SLIRP-208ENST00000556956 NR1I2O75469 434 aa6.04□□□□□ -1.44
SLIRP-208ENST00000556956 SCUBE3Q8IX30 993 aa6.04□□□□□ -1.44
SLIRP-208ENST00000556956 SPSB2Q99619 263 aa6.04□□□□□ -1.44
SLIRP-208ENST00000556956 TTC13Q8NBP0 860 aa6.03□□□□□ -1.44
SLIRP-208ENST00000556956 EYA1Q99502 592 aa6.03□□□□□ -1.44
SLIRP-208ENST00000556956 RBM27Q9P2N5 1060 aaKnown RBP6.03□□□□□ -1.44
SLIRP-208ENST00000556956 FOXK2Q01167 660 aa6.02□□□□□ -1.45
SLIRP-208ENST00000556956 CAMK2BQ13554 666 aa6.02□□□□□ -1.45
SLIRP-208ENST00000556956 KMT5BQ4FZB7 885 aa6.02□□□□□ -1.45
SLIRP-208ENST00000556956 BTBD11A6QL63 1104 aa6.01□□□□□ -1.45
SLIRP-208ENST00000556956 CFHP08603 1231 aa6.01□□□□□ -1.45
SLIRP-208ENST00000556956 PADI6Q6TGC4 694 aa6.01□□□□□ -1.45
SLIRP-208ENST00000556956 KRT76Q01546 638 aa5.98□□□□□ -1.45
SLIRP-208ENST00000556956 PUS10Q3MIT2 529 aaKnown RBP5.98□□□□□ -1.45
SLIRP-208ENST00000556956 SOBPA7XYQ1 873 aa5.97□□□□□ -1.45
SLIRP-208ENST00000556956 AMER1Q5JTC6 1135 aaPredicted RBP5.97□□□□□ -1.45
SLIRP-208ENST00000556956 ZFP42Q96MM3 310 aa5.97□□□□□ -1.45
SLIRP-208ENST00000556956 MSTNO14793 375 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 18.8 ms