RNA–Protein interactions for RNA: ENST00000556718.1

PRPF39-210, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 3

Gene PRPF39, Length 499 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-210ENST00000556718 SLC4A3P48751 1232 aa11.07□□□□□ -0.64
PRPF39-210ENST00000556718 RBM46Q8TBY0 533 aaKnown RBP11.06□□□□□ -0.64
PRPF39-210ENST00000556718 TMEM134Q9H6X4 195 aa11.06□□□□□ -0.64
PRPF39-210ENST00000556718 RCCD1A6NED2 376 aa11.05□□□□□ -0.64
PRPF39-210ENST00000556718 TLL1O43897 1013 aa11.05□□□□□ -0.64
PRPF39-210ENST00000556718 SEMA3EO15041 775 aa11.04□□□□□ -0.64
PRPF39-210ENST00000556718 GGCXP38435 758 aa11.04□□□□□ -0.64
PRPF39-210ENST00000556718 EMID1Q96A84 441 aaPredicted RBP11.03□□□□□ -0.64
PRPF39-210ENST00000556718 TMUB1Q9BVT8 246 aa11.03□□□□□ -0.64
PRPF39-210ENST00000556718 PRR14Q9BWN1 585 aa11.03□□□□□ -0.64
PRPF39-210ENST00000556718 PDZRN3Q9UPQ7 1066 aa11.03□□□□□ -0.64
PRPF39-210ENST00000556718 RNF223E7ERA6 249 aa11.02□□□□□ -0.65
PRPF39-210ENST00000556718 SLC10A3P09131 477 aa11.01□□□□□ -0.65
PRPF39-210ENST00000556718 CFHP08603 1231 aa11□□□□□ -0.65
PRPF39-210ENST00000556718 PPEF1O14829 653 aaPredicted RBP10.99□□□□□ -0.65
PRPF39-210ENST00000556718 ACTN4O43707 911 aaKnown RBP10.99□□□□□ -0.65
PRPF39-210ENST00000556718 FCHSD2O94868 740 aa10.99□□□□□ -0.65
PRPF39-210ENST00000556718 TRIM67Q6ZTA4 783 aa10.98□□□□□ -0.65
PRPF39-210ENST00000556718 SLC19A1P41440 591 aa10.97□□□□□ -0.65
PRPF39-210ENST00000556718 KMT5BQ4FZB7 885 aa10.97□□□□□ -0.65
PRPF39-210ENST00000556718 S1PR4O95977 384 aa10.96□□□□□ -0.65
PRPF39-210ENST00000556718 P3H3Q8IVL6 736 aa10.96□□□□□ -0.65
PRPF39-210ENST00000556718 PXYLP1Q8TE99 480 aa10.95□□□□□ -0.66
PRPF39-210ENST00000556718 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP10.94□□□□□ -0.66
PRPF39-210ENST00000556718 RBM26Q5T8P6 1007 aaKnown RBP10.93□□□□□ -0.66
PRPF39-210ENST00000556718 LIAT1Q6ZQX7 453 aa10.92□□□□□ -0.66
PRPF39-210ENST00000556718 FECHP22830 423 aa10.91□□□□□ -0.66
PRPF39-210ENST00000556718 SPRYD7Q5W111 196 aa10.91□□□□□ -0.66
PRPF39-210ENST00000556718 ANKLE1Q8NAG6 615 aa10.91□□□□□ -0.66
PRPF39-210ENST00000556718 ADH1BP00325 375 aa10.9□□□□□ -0.66
PRPF39-210ENST00000556718 OATP04181 439 aa10.9□□□□□ -0.66
PRPF39-210ENST00000556718 PUS10Q3MIT2 529 aaKnown RBP10.9□□□□□ -0.66
PRPF39-210ENST00000556718 METTL3Q86U44 580 aaKnown RBP10.9□□□□□ -0.66
PRPF39-210ENST00000556718 TESPA1A2RU30 521 aaPredicted RBP10.89□□□□□ -0.67
PRPF39-210ENST00000556718 PLA2G2CQ5R387 149 aa10.89□□□□□ -0.67
PRPF39-210ENST00000556718 NR1I2O75469 434 aa10.88□□□□□ -0.67
PRPF39-210ENST00000556718 HIC1Q14526 733 aa10.88□□□□□ -0.67
PRPF39-210ENST00000556718 ZNF787Q6DD87 383 aa10.88□□□□□ -0.67
PRPF39-210ENST00000556718 ZNF598Q86UK7 904 aaKnown RBP10.88□□□□□ -0.67
PRPF39-210ENST00000556718 SCUBE3Q8IX30 993 aa10.88□□□□□ -0.67
PRPF39-210ENST00000556718 GPR37O15354 613 aa10.87□□□□□ -0.67
PRPF39-210ENST00000556718 NLRP7Q8WX94 980 aa10.86□□□□□ -0.67
PRPF39-210ENST00000556718 SLC6A16Q9GZN6 736 aa10.86□□□□□ -0.67
PRPF39-210ENST00000556718 ZNF697Q5TEC3 545 aa10.85□□□□□ -0.67
PRPF39-210ENST00000556718 TNFRSF10AO00220 468 aa10.83□□□□□ -0.68
PRPF39-210ENST00000556718 GNPATO15228 680 aa10.83□□□□□ -0.68
PRPF39-210ENST00000556718 GDF9O60383 454 aa10.82□□□□□ -0.68
PRPF39-210ENST00000556718 PRR20EP86478 221 aa10.82□□□□□ -0.68
PRPF39-210ENST00000556718 PRR20CP86479 221 aa10.82□□□□□ -0.68
PRPF39-210ENST00000556718 PRR20DP86480 221 aa10.82□□□□□ -0.68
PRPF39-210ENST00000556718 PRR20BP86481 221 aa10.82□□□□□ -0.68
PRPF39-210ENST00000556718 PRR20AP86496 221 aa10.82□□□□□ -0.68
PRPF39-210ENST00000556718 MYT1Q01538 1121 aa10.82□□□□□ -0.68
PRPF39-210ENST00000556718 PKDCCQ504Y2 493 aa10.81□□□□□ -0.68
PRPF39-210ENST00000556718 SPSB2Q99619 263 aa10.81□□□□□ -0.68
PRPF39-210ENST00000556718 RDH13Q8NBN7 331 aa10.8□□□□□ -0.68
PRPF39-210ENST00000556718 PHOX2BQ99453 314 aa10.8□□□□□ -0.68
PRPF39-210ENST00000556718 DAXXQ9UER7 740 aaPredicted RBP10.8□□□□□ -0.68
PRPF39-210ENST00000556718 DDX11L8A8MPP1 907 aa10.79□□□□□ -0.68
PRPF39-210ENST00000556718 DGAT1O75907 488 aa10.79□□□□□ -0.68
PRPF39-210ENST00000556718 PLCB2Q00722 1185 aa10.79□□□□□ -0.68
PRPF39-210ENST00000556718 RSPH4AQ5TD94 716 aa10.79□□□□□ -0.68
PRPF39-210ENST00000556718 MORN1Q5T089 497 aa10.78□□□□□ -0.68
PRPF39-210ENST00000556718 SMYD5Q6GMV2 418 aa10.78□□□□□ -0.68
PRPF39-210ENST00000556718 ZNF775Q96BV0 537 aaPredicted RBP10.78□□□□□ -0.68
PRPF39-210ENST00000556718 FAM187AA6NFU0 413 aa10.77□□□□□ -0.69
PRPF39-210ENST00000556718 POTECB2RU33 542 aa10.77□□□□□ -0.69
PRPF39-210ENST00000556718 FUT2Q10981 343 aa10.77□□□□□ -0.69
PRPF39-210ENST00000556718 THAP11Q96EK4 314 aa10.77□□□□□ -0.69
PRPF39-210ENST00000556718 PKD2L1Q9P0L9 805 aa10.75□□□□□ -0.69
PRPF39-210ENST00000556718 FOXC1Q12948 553 aa10.74□□□□□ -0.69
PRPF39-210ENST00000556718 FAM160A2Q8N612 972 aaPredicted RBP10.74□□□□□ -0.69
PRPF39-210ENST00000556718 SLC27A5Q9Y2P5 690 aa10.74□□□□□ -0.69
PRPF39-210ENST00000556718 ATP6V1AP38606 617 aa10.73□□□□□ -0.69
PRPF39-210ENST00000556718 GCGRP47871 477 aa10.73□□□□□ -0.69
PRPF39-210ENST00000556718 PRDM9Q9NQV7 894 aa10.72□□□□□ -0.69
PRPF39-210ENST00000556718 FCF1Q9Y324 198 aaKnown RBP10.72□□□□□ -0.69
PRPF39-210ENST00000556718 ST8SIA5O15466 376 aa10.71□□□□□ -0.69
PRPF39-210ENST00000556718 FMNL1O95466 1100 aaPredicted RBP10.7□□□□□ -0.7
PRPF39-210ENST00000556718 GPIHBP1Q8IV16 184 aa10.69□□□□□ -0.7
PRPF39-210ENST00000556718 RPIAP49247 311 aa10.68□□□□□ -0.7
PRPF39-210ENST00000556718 RNF19BQ6ZMZ0 732 aa10.68□□□□□ -0.7
PRPF39-210ENST00000556718 BRICD5Q6PL45 260 aa10.67□□□□□ -0.7
PRPF39-210ENST00000556718 SULF1Q8IWU6 871 aa10.67□□□□□ -0.7
PRPF39-210ENST00000556718 AAASQ9NRG9 546 aa10.67□□□□□ -0.7
PRPF39-210ENST00000556718 KDM2AQ9Y2K7 1162 aa10.66□□□□□ -0.7
PRPF39-210ENST00000556718 HAP1P54257 671 aaPredicted RBP10.64□□□□□ -0.71
PRPF39-210ENST00000556718 LMOD2Q6P5Q4 547 aa10.64□□□□□ -0.71
PRPF39-210ENST00000556718 TOR4AQ9NXH8 423 aa10.64□□□□□ -0.71
PRPF39-210ENST00000556718 DACH1Q9UI36 760 aa10.64□□□□□ -0.71
PRPF39-210ENST00000556718 SALL2Q9Y467 1007 aaPredicted RBP10.64□□□□□ -0.71
PRPF39-210ENST00000556718 CD2BP2O95400 341 aaKnown RBP10.62□□□□□ -0.71
PRPF39-210ENST00000556718 MSS51Q4VC12 460 aa10.61□□□□□ -0.71
PRPF39-210ENST00000556718 CD46P15529 392 aa10.6□□□□□ -0.71
PRPF39-210ENST00000556718 CYP4X1Q8N118 509 aa10.59□□□□□ -0.71
PRPF39-210ENST00000556718 HLA-CQ95604 372 aa10.59□□□□□ -0.71
PRPF39-210ENST00000556718 AVPP01185 164 aa10.57□□□□□ -0.72
PRPF39-210ENST00000556718 MAP2K5Q13163 448 aa10.57□□□□□ -0.72
PRPF39-210ENST00000556718 GRIPAP1Q4V328 841 aa10.57□□□□□ -0.72
PRPF39-210ENST00000556718 CRIPAKQ8N1N5 446 aa10.57□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 22.2 ms