RNA–Protein interactions for RNA: ENST00000555518.5

LINC00643-203, long intergenic non-protein coding RNA 643, humanhuman

TSL 4

Gene LINC00643, Length 552 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00643-203ENST00000555518 ZNF516Q92618 1163 aa11.46□□□□□ -0.57
LINC00643-203ENST00000555518 EYA1Q99502 592 aa11.46□□□□□ -0.57
LINC00643-203ENST00000555518 ZPR1O75312 459 aa11.42□□□□□ -0.58
LINC00643-203ENST00000555518 DNAJB2P25686 324 aa11.42□□□□□ -0.58
LINC00643-203ENST00000555518 RBM46Q8TBY0 533 aaKnown RBP11.42□□□□□ -0.58
LINC00643-203ENST00000555518 COPS2P61201 443 aa11.41□□□□□ -0.58
LINC00643-203ENST00000555518 PCDHB3Q9Y5E6 796 aa11.41□□□□□ -0.58
LINC00643-203ENST00000555518 PTGDRQ13258 359 aa11.39□□□□□ -0.59
LINC00643-203ENST00000555518 NKX2-3Q8TAU0 364 aa11.38□□□□□ -0.59
LINC00643-203ENST00000555518 CECR2Q9BXF3 1484 aa11.38□□□□□ -0.59
LINC00643-203ENST00000555518 KMT5BQ4FZB7 885 aa11.37□□□□□ -0.59
LINC00643-203ENST00000555518 PDZRN3Q9UPQ7 1066 aa11.37□□□□□ -0.59
LINC00643-203ENST00000555518 P3H3Q8IVL6 736 aa11.36□□□□□ -0.59
LINC00643-203ENST00000555518 TMEM134Q9H6X4 195 aa11.36□□□□□ -0.59
LINC00643-203ENST00000555518 MLLT3P42568 568 aaPredicted RBP11.35□□□□□ -0.59
LINC00643-203ENST00000555518 KCNV2Q8TDN2 545 aa11.33□□□□□ -0.6
LINC00643-203ENST00000555518 ADGRG1Q9Y653 693 aa11.33□□□□□ -0.6
LINC00643-203ENST00000555518 LCE2BO14633 110 aa11.32□□□□□ -0.6
LINC00643-203ENST00000555518 ACTN4O43707 911 aaKnown RBP11.31□□□□□ -0.6
LINC00643-203ENST00000555518 RSF1Q96T23 1441 aaPredicted RBP11.3□□□□□ -0.6
LINC00643-203ENST00000555518 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.3□□□□□ -0.6
LINC00643-203ENST00000555518 NUTM2FA1L443 756 aa11.3□□□□□ -0.6
LINC00643-203ENST00000555518 FCHSD2O94868 740 aa11.3□□□□□ -0.6
LINC00643-203ENST00000555518 BLOC1S3Q6QNY0 202 aa11.3□□□□□ -0.6
LINC00643-203ENST00000555518 MROH2BQ7Z745 1585 aa11.29□□□□□ -0.6
LINC00643-203ENST00000555518 RCCD1A6NED2 376 aa11.29□□□□□ -0.6
LINC00643-203ENST00000555518 SLC19A1P41440 591 aa11.29□□□□□ -0.6
LINC00643-203ENST00000555518 RSPH4AQ5TD94 716 aa11.29□□□□□ -0.6
LINC00643-203ENST00000555518 ANKLE1Q8NAG6 615 aa11.29□□□□□ -0.6
LINC00643-203ENST00000555518 TSHZ2Q9NRE2 1034 aa11.29□□□□□ -0.6
LINC00643-203ENST00000555518 RNF223E7ERA6 249 aa11.28□□□□□ -0.6
LINC00643-203ENST00000555518 OATP04181 439 aa11.28□□□□□ -0.6
LINC00643-203ENST00000555518 BAZ1AQ9NRL2 1556 aaPredicted RBP11.28□□□□□ -0.6
LINC00643-203ENST00000555518 NR1I2O75469 434 aa11.27□□□□□ -0.61
LINC00643-203ENST00000555518 CFHP08603 1231 aa11.26□□□□□ -0.61
LINC00643-203ENST00000555518 SMARCA4P51532 1647 aa11.26□□□□□ -0.61
LINC00643-203ENST00000555518 ZNF787Q6DD87 383 aa11.24□□□□□ -0.61
LINC00643-203ENST00000555518 ZNF598Q86UK7 904 aaKnown RBP11.24□□□□□ -0.61
LINC00643-203ENST00000555518 PRR20EP86478 221 aa11.23□□□□□ -0.61
LINC00643-203ENST00000555518 PRR20CP86479 221 aa11.23□□□□□ -0.61
LINC00643-203ENST00000555518 PRR20DP86480 221 aa11.23□□□□□ -0.61
LINC00643-203ENST00000555518 PRR20BP86481 221 aa11.23□□□□□ -0.61
LINC00643-203ENST00000555518 PRR20AP86496 221 aa11.23□□□□□ -0.61
LINC00643-203ENST00000555518 ADH1BP00325 375 aa11.22□□□□□ -0.61
LINC00643-203ENST00000555518 SPRYD7Q5W111 196 aa11.22□□□□□ -0.61
LINC00643-203ENST00000555518 SUPT5HO00267 1087 aaKnown RBP11.21□□□□□ -0.61
LINC00643-203ENST00000555518 DGAT1O75907 488 aa11.21□□□□□ -0.61
LINC00643-203ENST00000555518 HIC1Q14526 733 aa11.21□□□□□ -0.61
LINC00643-203ENST00000555518 TLL1O43897 1013 aa11.2□□□□□ -0.62
LINC00643-203ENST00000555518 PKDCCQ504Y2 493 aa11.2□□□□□ -0.62
LINC00643-203ENST00000555518 SMYD5Q6GMV2 418 aa11.2□□□□□ -0.62
LINC00643-203ENST00000555518 S1PR4O95977 384 aa11.19□□□□□ -0.62
LINC00643-203ENST00000555518 PXYLP1Q8TE99 480 aa11.19□□□□□ -0.62
LINC00643-203ENST00000555518 SLC6A16Q9GZN6 736 aa11.18□□□□□ -0.62
LINC00643-203ENST00000555518 WIZO95785 1651 aa11.17□□□□□ -0.62
LINC00643-203ENST00000555518 EIF4G1Q04637 1599 aaKnown RBP11.17□□□□□ -0.62
LINC00643-203ENST00000555518 SLC10A3P09131 477 aa11.17□□□□□ -0.62
LINC00643-203ENST00000555518 TRIM67Q6ZTA4 783 aa11.17□□□□□ -0.62
LINC00643-203ENST00000555518 PEG3Q9GZU2 1588 aa11.16□□□□□ -0.62
LINC00643-203ENST00000555518 FAM161AQ3B820 660 aa11.16□□□□□ -0.62
LINC00643-203ENST00000555518 SEMA3EO15041 775 aa11.15□□□□□ -0.62
LINC00643-203ENST00000555518 ZNF697Q5TEC3 545 aa11.15□□□□□ -0.62
LINC00643-203ENST00000555518 LMOD2Q6P5Q4 547 aa11.15□□□□□ -0.62
LINC00643-203ENST00000555518 METTL3Q86U44 580 aaKnown RBP11.14□□□□□ -0.63
LINC00643-203ENST00000555518 SCUBE3Q8IX30 993 aa11.14□□□□□ -0.63
LINC00643-203ENST00000555518 EMID1Q96A84 441 aaPredicted RBP11.14□□□□□ -0.63
LINC00643-203ENST00000555518 LIAT1Q6ZQX7 453 aa11.12□□□□□ -0.63
LINC00643-203ENST00000555518 PPEF1O14829 653 aaPredicted RBP11.11□□□□□ -0.63
LINC00643-203ENST00000555518 SPSB2Q99619 263 aa11.11□□□□□ -0.63
LINC00643-203ENST00000555518 DAXXQ9UER7 740 aaPredicted RBP11.11□□□□□ -0.63
LINC00643-203ENST00000555518 ATAD2BQ9ULI0 1458 aa11.11□□□□□ -0.63
LINC00643-203ENST00000555518 GNPATO15228 680 aa11.1□□□□□ -0.63
LINC00643-203ENST00000555518 MYT1Q01538 1121 aa11.1□□□□□ -0.63
LINC00643-203ENST00000555518 TESPA1A2RU30 521 aaPredicted RBP11.09□□□□□ -0.63
LINC00643-203ENST00000555518 GDF9O60383 454 aa11.09□□□□□ -0.63
LINC00643-203ENST00000555518 SULF1Q8IWU6 871 aa11.08□□□□□ -0.64
LINC00643-203ENST00000555518 TOP2AP11388 1531 aaKnown RBP11.08□□□□□ -0.64
LINC00643-203ENST00000555518 FAM187AA6NFU0 413 aa11.07□□□□□ -0.64
LINC00643-203ENST00000555518 RPIAP49247 311 aa11.07□□□□□ -0.64
LINC00643-203ENST00000555518 SMARCA2P51531 1590 aa11.07□□□□□ -0.64
LINC00643-203ENST00000555518 RDH13Q8NBN7 331 aa11.06□□□□□ -0.64
LINC00643-203ENST00000555518 ZNF775Q96BV0 537 aaPredicted RBP11.06□□□□□ -0.64
LINC00643-203ENST00000555518 ATP6V1AP38606 617 aa11.05□□□□□ -0.64
LINC00643-203ENST00000555518 PUS10Q3MIT2 529 aaKnown RBP11.05□□□□□ -0.64
LINC00643-203ENST00000555518 SALL2Q9Y467 1007 aaPredicted RBP11.05□□□□□ -0.64
LINC00643-203ENST00000555518 TNFRSF10AO00220 468 aa11.04□□□□□ -0.64
LINC00643-203ENST00000555518 CD2BP2O95400 341 aaKnown RBP11.04□□□□□ -0.64
LINC00643-203ENST00000555518 MORN1Q5T089 497 aa11.04□□□□□ -0.64
LINC00643-203ENST00000555518 NCAPD3P42695 1498 aa11.04□□□□□ -0.64
LINC00643-203ENST00000555518 FMNL1O95466 1100 aaPredicted RBP11.03□□□□□ -0.64
LINC00643-203ENST00000555518 CC2D2AQ9P2K1 1620 aa11.02□□□□□ -0.64
LINC00643-203ENST00000555518 GRIPAP1Q4V328 841 aa11.02□□□□□ -0.65
LINC00643-203ENST00000555518 PLA2G2CQ5R387 149 aa11.02□□□□□ -0.65
LINC00643-203ENST00000555518 RBM26Q5T8P6 1007 aaKnown RBP11.02□□□□□ -0.65
LINC00643-203ENST00000555518 HMGXB3Q12766 1538 aa11.02□□□□□ -0.65
LINC00643-203ENST00000555518 DDX11L8A8MPP1 907 aa11□□□□□ -0.65
LINC00643-203ENST00000555518 FUT2Q10981 343 aa11□□□□□ -0.65
LINC00643-203ENST00000555518 BAZ1BQ9UIG0 1483 aaKnown RBP11□□□□□ -0.65
LINC00643-203ENST00000555518 GCGRP47871 477 aa10.99□□□□□ -0.65
LINC00643-203ENST00000555518 CRIPAKQ8N1N5 446 aa10.99□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 22.1 ms