RNA–Protein interactions for RNA: ENST00000554429.5

PRPF39-206, Transcript of pre-mRNA processing factor 39, humanhuman

TSL 5

Gene PRPF39, Length 2,977 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF39-206ENST00000554429 ATP10AO60312 1499 aa4.25□□□□□ -1.73
PRPF39-206ENST00000554429 CDC42BPBQ9Y5S2 1711 aa4.24□□□□□ -1.73
PRPF39-206ENST00000554429 ZNF142P52746 1687 aaPredicted RBP4.24□□□□□ -1.73
PRPF39-206ENST00000554429 MKRN3Q13064 507 aaKnown RBP4.24□□□□□ -1.73
PRPF39-206ENST00000554429 KIF14Q15058 1648 aa4.24□□□□□ -1.73
PRPF39-206ENST00000554429 DIP2CQ9Y2E4 1556 aa4.24□□□□□ -1.73
PRPF39-206ENST00000554429 MLH3Q9UHC1 1453 aa4.24□□□□□ -1.73
PRPF39-206ENST00000554429 FAM135AQ9P2D6 1515 aa4.24□□□□□ -1.73
PRPF39-206ENST00000554429 C3P01024 1663 aa4.23□□□□□ -1.73
PRPF39-206ENST00000554429 UBTFP17480 764 aaKnown RBP4.23□□□□□ -1.73
PRPF39-206ENST00000554429 PTPRTO14522 1441 aa4.23□□□□□ -1.73
PRPF39-206ENST00000554429 ZNF518AQ6AHZ1 1483 aa4.23□□□□□ -1.73
PRPF39-206ENST00000554429 FMN1Q68DA7 1419 aa4.23□□□□□ -1.73
PRPF39-206ENST00000554429 ABCC1P33527 1531 aa4.22□□□□□ -1.73
PRPF39-206ENST00000554429 ABCA6Q8N139 1617 aa4.22□□□□□ -1.73
PRPF39-206ENST00000554429 A0A0G2JS52 829 aa4.22□□□□□ -1.73
PRPF39-206ENST00000554429 CDC42BPAQ5VT25 1732 aa4.22□□□□□ -1.73
PRPF39-206ENST00000554429 PLXNC1O60486 1568 aa4.22□□□□□ -1.73
PRPF39-206ENST00000554429 KIDINS220Q9ULH0 1771 aa4.22□□□□□ -1.73
PRPF39-206ENST00000554429 HRCP23327 699 aa4.22□□□□□ -1.73
PRPF39-206ENST00000554429 GOLGA2Q08379 1002 aa4.22□□□□□ -1.73
PRPF39-206ENST00000554429 CCDC18Q5T9S5 1454 aa4.22□□□□□ -1.73
PRPF39-206ENST00000554429 TROQ12816 1431 aaPredicted RBP4.21□□□□□ -1.73
PRPF39-206ENST00000554429 NPATQ14207 1427 aa4.21□□□□□ -1.74
PRPF39-206ENST00000554429 YEATS2Q9ULM3 1422 aa4.21□□□□□ -1.74
PRPF39-206ENST00000554429 LTBP4Q8N2S1 1624 aa4.21□□□□□ -1.74
PRPF39-206ENST00000554429 KDM2AQ9Y2K7 1162 aa4.21□□□□□ -1.74
PRPF39-206ENST00000554429 CDK13Q14004 1512 aaKnown RBP4.21□□□□□ -1.74
PRPF39-206ENST00000554429 CNTLNQ9NXG0 1405 aa4.21□□□□□ -1.74
PRPF39-206ENST00000554429 INO80Q9ULG1 1556 aaPredicted RBP4.2□□□□□ -1.74
PRPF39-206ENST00000554429 ARHGAP35Q9NRY4 1499 aa4.2□□□□□ -1.74
PRPF39-206ENST00000554429 Q6ZNB5 142 aa4.2□□□□□ -1.74
PRPF39-206ENST00000554429 FAM212AQ96EL1 285 aa4.2□□□□□ -1.74
PRPF39-206ENST00000554429 KCNH8Q96L42 1107 aa4.2□□□□□ -1.74
PRPF39-206ENST00000554429 FBXO3Q9UK99 471 aa4.2□□□□□ -1.74
PRPF39-206ENST00000554429 PLEKHD1A6NEE1 506 aa4.2□□□□□ -1.74
PRPF39-206ENST00000554429 ADGBQ8N7X0 1667 aa4.2□□□□□ -1.74
PRPF39-206ENST00000554429 RAPGEF3O95398 923 aa4.2□□□□□ -1.74
PRPF39-206ENST00000554429 PDIA4P13667 645 aaKnown RBP4.2□□□□□ -1.74
PRPF39-206ENST00000554429 SCAPERQ9BY12 1400 aa4.2□□□□□ -1.74
PRPF39-206ENST00000554429 PLA2R1Q13018 1463 aa4.19□□□□□ -1.74
PRPF39-206ENST00000554429 LOC100996750A0A140TA64 210 aa4.19□□□□□ -1.74
PRPF39-206ENST00000554429 KRTAP4-6Q9BYQ5 205 aa4.19□□□□□ -1.74
PRPF39-206ENST00000554429 CASKIN1Q8WXD9 1431 aa4.19□□□□□ -1.74
PRPF39-206ENST00000554429 SAMD9LQ8IVG5 1584 aa4.19□□□□□ -1.74
PRPF39-206ENST00000554429 CLIP1P30622 1438 aa4.19□□□□□ -1.74
PRPF39-206ENST00000554429 FYCO1Q9BQS8 1478 aa4.19□□□□□ -1.74
PRPF39-206ENST00000554429 KIAA1107Q9UPP5 1409 aa4.18□□□□□ -1.74
PRPF39-206ENST00000554429 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP4.18□□□□□ -1.745e-7■■■■□ 22.8
PRPF39-206ENST00000554429 BOLA1Q9Y3E2 137 aa4.18□□□□□ -1.74
PRPF39-206ENST00000554429 MYO3AQ8NEV4 1616 aa4.18□□□□□ -1.74
PRPF39-206ENST00000554429 NCOA1Q15788 1441 aa4.18□□□□□ -1.74
PRPF39-206ENST00000554429 PLEKHH2Q8IVE3 1493 aa4.18□□□□□ -1.74
PRPF39-206ENST00000554429 CHMP4AQ9BY43 222 aa4.18□□□□□ -1.74
PRPF39-206ENST00000554429 UHRF1BP1Q6BDS2 1440 aa4.18□□□□□ -1.74
PRPF39-206ENST00000554429 ARHGAP5Q13017 1502 aa4.17□□□□□ -1.74
PRPF39-206ENST00000554429 ZNF316A6NFI3 1004 aaPredicted RBP4.17□□□□□ -1.74
PRPF39-206ENST00000554429 TK2O00142 265 aa4.17□□□□□ -1.74
PRPF39-206ENST00000554429 CERKQ8TCT0 537 aa4.17□□□□□ -1.74
PRPF39-206ENST00000554429 TRAPPC8Q9Y2L5 1435 aa4.17□□□□□ -1.74
PRPF39-206ENST00000554429 POLR1AO95602 1720 aaPredicted RBP4.17□□□□□ -1.74
PRPF39-206ENST00000554429 EFCAB2Q5VUJ9 269 aa4.17□□□□□ -1.74
PRPF39-206ENST00000554429 GPR153Q6NV75 609 aa4.17□□□□□ -1.74
PRPF39-206ENST00000554429 TCOF1Q13428 1488 aaKnown RBP4.17□□□□□ -1.74
PRPF39-206ENST00000554429 FKBP8Q14318 412 aa4.17□□□□□ -1.74
PRPF39-206ENST00000554429 PROM2Q8N271 834 aa4.17□□□□□ -1.74
PRPF39-206ENST00000554429 SPATA31D1Q6ZQQ2 1576 aa4.16□□□□□ -1.74
PRPF39-206ENST00000554429 DEPDC5O75140 1603 aa4.16□□□□□ -1.74
PRPF39-206ENST00000554429 VSIG10Q8N0Z9 540 aa4.16□□□□□ -1.74
PRPF39-206ENST00000554429 NUBP1P53384 320 aa4.16□□□□□ -1.74
PRPF39-206ENST00000554429 CDK11AQ9UQ88 783 aaPredicted RBP4.16□□□□□ -1.74
PRPF39-206ENST00000554429 ATP7AQ04656 1500 aa4.16□□□□□ -1.74
PRPF39-206ENST00000554429 SUPT6HQ7KZ85 1726 aaKnown RBP4.16□□□□□ -1.74
PRPF39-206ENST00000554429 RTEL1-TNFRSF6BF6WH68 1400 aa4.15□□□□□ -1.74
PRPF39-206ENST00000554429 CLTCQ00610 1675 aaKnown RBP4.15□□□□□ -1.74
PRPF39-206ENST00000554429 ZC3H13Q5T200 1668 aaKnown RBP4.15□□□□□ -1.74
PRPF39-206ENST00000554429 CEP170BQ9Y4F5 1589 aaPredicted RBP4.15□□□□□ -1.75
PRPF39-206ENST00000554429 DHX37Q8IY37 1157 aaKnown RBP4.15□□□□□ -1.75
PRPF39-206ENST00000554429 RNF17Q9BXT8 1623 aaKnown RBP4.15□□□□□ -1.75
PRPF39-206ENST00000554429 MAST1Q9Y2H9 1570 aa4.15□□□□□ -1.75
PRPF39-206ENST00000554429 GPATCH8Q9UKJ3 1502 aaKnown RBP4.15□□□□□ -1.75
PRPF39-206ENST00000554429 CAMSAP1Q5T5Y3 1602 aa4.14□□□□□ -1.75
PRPF39-206ENST00000554429 EIF2AK4Q9P2K8 1649 aaKnown RBP4.14□□□□□ -1.75
PRPF39-206ENST00000554429 CPS1P31327 1500 aa4.14□□□□□ -1.75
PRPF39-206ENST00000554429 PTPRKQ15262 1439 aa4.14□□□□□ -1.75
PRPF39-206ENST00000554429 ZNF467Q7Z7K2 595 aaPredicted RBP4.14□□□□□ -1.75
PRPF39-206ENST00000554429 MIER1Q8N108 512 aa4.14□□□□□ -1.75
PRPF39-206ENST00000554429 KDM5AP29375 1690 aaKnown RBP4.14□□□□□ -1.75
PRPF39-206ENST00000554429 ARHGEF5Q12774 1597 aa4.14□□□□□ -1.75
PRPF39-206ENST00000554429 DNMT1P26358 1616 aaKnown RBP4.14□□□□□ -1.75
PRPF39-206ENST00000554429 P3H3Q8IVL6 736 aa4.14□□□□□ -1.75
PRPF39-206ENST00000554429 SYNMO15061 1565 aa4.14□□□□□ -1.75
PRPF39-206ENST00000554429 A2ML1A8K2U0 1454 aa4.13□□□□□ -1.75
PRPF39-206ENST00000554429 ARID4BQ4LE39 1312 aaPredicted RBP4.13□□□□□ -1.75
PRPF39-206ENST00000554429 TIAM1Q13009 1591 aa4.13□□□□□ -1.75
PRPF39-206ENST00000554429 NEURL4Q96JN8 1562 aa4.13□□□□□ -1.75
PRPF39-206ENST00000554429 TRAF7Q6Q0C0 670 aa4.13□□□□□ -1.75
PRPF39-206ENST00000554429 EHBP1L1Q8N3D4 1523 aa4.13□□□□□ -1.75
PRPF39-206ENST00000554429 SYCP2Q9BX26 1530 aa4.13□□□□□ -1.75
PRPF39-206ENST00000554429 KDM5DQ9BY66 1539 aa4.13□□□□□ -1.75
Retrieved 100 of 20,778 RNA–protein pairs in 11.6 ms