RNA–Protein interactions for RNA: ENST00000552590.6

PRIM1-208, Transcript of DNA primase subunit 1, humanhuman

TSL 5

Gene PRIM1, Length 1,459 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRIM1-208ENST00000552590 PCDHB13Q9Y5F0 798 aa14.29□□□□□ -0.12
PRIM1-208ENST00000552590 FAM135BQ49AJ0 1406 aa14.29□□□□□ -0.12
PRIM1-208ENST00000552590 PLEKHG5O94827 1062 aa14.28□□□□□ -0.12
PRIM1-208ENST00000552590 MED14O60244 1454 aa14.28□□□□□ -0.12
PRIM1-208ENST00000552590 PROM2Q8N271 834 aa14.27□□□□□ -0.12
PRIM1-208ENST00000552590 SNPHO15079 494 aa14.26□□□□□ -0.13
PRIM1-208ENST00000552590 ABCC1P33527 1531 aa14.26□□□□□ -0.13
PRIM1-208ENST00000552590 FBXO31Q5XUX0 539 aaPredicted RBP14.25□□□□□ -0.13
PRIM1-208ENST00000552590 CDC42BPBQ9Y5S2 1711 aa14.25□□□□□ -0.13
PRIM1-208ENST00000552590 IQGAP1P46940 1657 aa14.25□□□□□ -0.13
PRIM1-208ENST00000552590 ITSN2Q9NZM3 1697 aa14.25□□□□□ -0.13
PRIM1-208ENST00000552590 THEMISQ8N1K5 641 aaPredicted RBP14.25□□□□□ -0.13
PRIM1-208ENST00000552590 MARVELD3Q96A59 401 aa14.25□□□□□ -0.13
PRIM1-208ENST00000552590 TNRQ92752 1358 aa14.24□□□□□ -0.13
PRIM1-208ENST00000552590 ATP1B4Q9UN42 357 aaPredicted RBP14.24□□□□□ -0.13
PRIM1-208ENST00000552590 DEPDC5O75140 1603 aa14.24□□□□□ -0.13
PRIM1-208ENST00000552590 XIRP1Q702N8 1843 aaKnown RBP14.23□□□□□ -0.13
PRIM1-208ENST00000552590 ZNF772Q68DY9 489 aaPredicted RBP14.22□□□□□ -0.13
PRIM1-208ENST00000552590 RXRBP28702 533 aa14.21□□□□□ -0.13
PRIM1-208ENST00000552590 MIER1Q8N108 512 aa14.21□□□□□ -0.13
PRIM1-208ENST00000552590 ROBO1Q9Y6N7 1651 aa14.21□□□□□ -0.14
PRIM1-208ENST00000552590 IRX5P78411 483 aaPredicted RBP14.2□□□□□ -0.14
PRIM1-208ENST00000552590 TMEM106CQ9BVX2 250 aa14.2□□□□□ -0.14
PRIM1-208ENST00000552590 CDK11AQ9UQ88 783 aaPredicted RBP14.2□□□□□ -0.14
PRIM1-208ENST00000552590 SAMD9LQ8IVG5 1584 aa14.2□□□□□ -0.14
PRIM1-208ENST00000552590 SPAG9O60271 1321 aaKnown RBP14.19□□□□□ -0.14
PRIM1-208ENST00000552590 PLXNC1O60486 1568 aa14.18□□□□□ -0.14
PRIM1-208ENST00000552590 SETBP1Q9Y6X0 1596 aa14.18□□□□□ -0.14
PRIM1-208ENST00000552590 FAM135AQ9P2D6 1515 aa14.18□□□□□ -0.14
PRIM1-208ENST00000552590 JCADQ9P266 1359 aa14.18□□□□□ -0.14
PRIM1-208ENST00000552590 UGGT1Q9NYU2 1555 aa14.18□□□□□ -0.14
PRIM1-208ENST00000552590 TROQ12816 1431 aaPredicted RBP14.18□□□□□ -0.14
PRIM1-208ENST00000552590 MEX3CQ5U5Q3 659 aaKnown RBP14.18□□□□□ -0.14
PRIM1-208ENST00000552590 IFNL1Q8IU54 200 aa14.18□□□□□ -0.14
PRIM1-208ENST00000552590 A2MP01023 1474 aa14.17□□□□□ -0.14
PRIM1-208ENST00000552590 LRP6O75581 1613 aa14.17□□□□□ -0.14
PRIM1-208ENST00000552590 PREX2Q70Z35 1606 aa14.15□□□□□ -0.14
PRIM1-208ENST00000552590 EIF2AK3Q9NZJ5 1116 aaKnown RBP14.14□□□□□ -0.15
PRIM1-208ENST00000552590 CLIP1P30622 1438 aa14.14□□□□□ -0.15
PRIM1-208ENST00000552590 CDK12Q9NYV4 1490 aaPredicted RBP14.14□□□□□ -0.15
PRIM1-208ENST00000552590 ZC3H13Q5T200 1668 aaKnown RBP14.13□□□□□ -0.15
PRIM1-208ENST00000552590 PHLPP1O60346 1717 aa14.13□□□□□ -0.15
PRIM1-208ENST00000552590 HNRNPMP52272 730 aaKnown RBP eCLIP14.12□□□□□ -0.15
PRIM1-208ENST00000552590 RBM33Q96EV2 1170 aaKnown RBP14.12□□□□□ -0.15
PRIM1-208ENST00000552590 ZNF777Q9ULD5 760 aaPredicted RBP14.12□□□□□ -0.15
PRIM1-208ENST00000552590 MIA2Q96PC5 1412 aa14.12□□□□□ -0.15
PRIM1-208ENST00000552590 ATP7AQ04656 1500 aa14.12□□□□□ -0.15
PRIM1-208ENST00000552590 OCEL1Q9H607 264 aa14.12□□□□□ -0.15
PRIM1-208ENST00000552590 PZPP20742 1482 aa14.11□□□□□ -0.15
PRIM1-208ENST00000552590 NLRP1Q9C000 1473 aa14.11□□□□□ -0.15
PRIM1-208ENST00000552590 EP400Q96L91 3159 aa14.11□□□□□ -0.15
PRIM1-208ENST00000552590 TMEM94Q12767 1356 aa14.1□□□□□ -0.15
PRIM1-208ENST00000552590 NUTM2BA6NNL0 878 aaPredicted RBP14.1□□□□□ -0.15
PRIM1-208ENST00000552590 NUTM2EB1AL46 878 aaPredicted RBP14.1□□□□□ -0.15
PRIM1-208ENST00000552590 NUTM2DQ5VT03 806 aaPredicted RBP14.1□□□□□ -0.15
PRIM1-208ENST00000552590 NUTM2AQ8IVF1 878 aaPredicted RBP14.1□□□□□ -0.15
PRIM1-208ENST00000552590 SYCP2Q9BX26 1530 aa14.09□□□□□ -0.15
PRIM1-208ENST00000552590 KDM5DQ9BY66 1539 aa14.09□□□□□ -0.15
PRIM1-208ENST00000552590 RGS12O14924 1447 aa14.08□□□□□ -0.15
PRIM1-208ENST00000552590 SPATA31A6Q5VVP1 1343 aa14.08□□□□□ -0.16
PRIM1-208ENST00000552590 EMP3P54852 163 aa14.07□□□□□ -0.16
PRIM1-208ENST00000552590 KRTAP3-3Q9BYR6 98 aa14.07□□□□□ -0.16
PRIM1-208ENST00000552590 KRTAP3-2Q9BYR7 98 aa14.07□□□□□ -0.16
PRIM1-208ENST00000552590 INO80Q9ULG1 1556 aaPredicted RBP14.07□□□□□ -0.16
PRIM1-208ENST00000552590 CDC42BPAQ5VT25 1732 aa14.06□□□□□ -0.16
PRIM1-208ENST00000552590 LRRC9Q6ZRR7 1453 aa14.05□□□□□ -0.16
PRIM1-208ENST00000552590 COL16A1Q07092 1604 aaPredicted RBP14.05□□□□□ -0.16
PRIM1-208ENST00000552590 LTKP29376 864 aa14.04□□□□□ -0.16
PRIM1-208ENST00000552590 SLAIN2Q9P270 581 aa14.04□□□□□ -0.16
PRIM1-208ENST00000552590 MAP3K1Q13233 1512 aa14.03□□□□□ -0.16
PRIM1-208ENST00000552590 SCAF11Q99590 1463 aaKnown RBP14.03□□□□□ -0.16
PRIM1-208ENST00000552590 AFF2P51816 1311 aa14.03□□□□□ -0.16
PRIM1-208ENST00000552590 WASHC2CQ9Y4E1 1318 aa14.02□□□□□ -0.16
PRIM1-208ENST00000552590 ADGBQ8N7X0 1667 aa14.02□□□□□ -0.16
PRIM1-208ENST00000552590 NUBP1P53384 320 aa14.02□□□□□ -0.16
PRIM1-208ENST00000552590 PROSER2Q86WR7 435 aaPredicted RBP14.02□□□□□ -0.16
PRIM1-208ENST00000552590 IFFO2Q5TF58 517 aa14.01□□□□□ -0.17
PRIM1-208ENST00000552590 HS3ST6Q96QI5 342 aa14.01□□□□□ -0.17
PRIM1-208ENST00000552590 LRRIQ1Q96JM4 1722 aa14.01□□□□□ -0.17
PRIM1-208ENST00000552590 FMN1Q68DA7 1419 aa14.01□□□□□ -0.17
PRIM1-208ENST00000552590 FGD6Q6ZV73 1430 aa14.01□□□□□ -0.17
PRIM1-208ENST00000552590 KIF3BO15066 747 aa14□□□□□ -0.17
PRIM1-208ENST00000552590 RBM6P78332 1123 aaKnown RBP14□□□□□ -0.17
PRIM1-208ENST00000552590 TXNDC2Q86VQ3 553 aa14□□□□□ -0.17
PRIM1-208ENST00000552590 ATAD2Q6PL18 1390 aa14□□□□□ -0.17
PRIM1-208ENST00000552590 POTEB3A0JP26 581 aa13.99□□□□□ -0.17
PRIM1-208ENST00000552590 POTEBQ6S5H4 581 aa13.99□□□□□ -0.17
PRIM1-208ENST00000552590 QTRT2Q9H974 415 aaKnown RBP13.99□□□□□ -0.17
PRIM1-208ENST00000552590 PLCD3Q8N3E9 789 aa13.98□□□□□ -0.17
PRIM1-208ENST00000552590 SHPRHQ149N8 1683 aa13.97□□□□□ -0.17
PRIM1-208ENST00000552590 FAM205CA6NFA0 338 aa13.97□□□□□ -0.17
PRIM1-208ENST00000552590 KCNA6P17658 529 aa13.97□□□□□ -0.17
PRIM1-208ENST00000552590 MSH6P52701 1360 aa13.96□□□□□ -0.17
PRIM1-208ENST00000552590 DHX29Q7Z478 1369 aaKnown RBP13.96□□□□□ -0.17
PRIM1-208ENST00000552590 KIAA1107Q9UPP5 1409 aa13.96□□□□□ -0.17
PRIM1-208ENST00000552590 UBR1Q8IWV7 1749 aa13.95□□□□□ -0.18
PRIM1-208ENST00000552590 FAM212AQ96EL1 285 aa13.95□□□□□ -0.18
PRIM1-208ENST00000552590 ZBTB47Q9UFB7 747 aaPredicted RBP13.95□□□□□ -0.18
PRIM1-208ENST00000552590 NCOA2Q15596 1464 aa13.94□□□□□ -0.18
PRIM1-208ENST00000552590 PRDM15P57071 1507 aaPredicted RBP13.93□□□□□ -0.18
Retrieved 100 of 20,778 RNA–protein pairs in 34.4 ms