RNA–Protein interactions for RNA: ENST00000549414.6

CUX1-213, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,452 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-213ENST00000549414 AMPHP49418 695 aa20.59■□□□□ 0.89
CUX1-213ENST00000549414 CENPQQ7L2Z9 268 aaPredicted RBP20.59■□□□□ 0.89
CUX1-213ENST00000549414 ZNF330Q9Y3S2 320 aaPredicted RBP20.58■□□□□ 0.89
CUX1-213ENST00000549414 STAC3Q96MF2 364 aa20.58■□□□□ 0.88
CUX1-213ENST00000549414 COG3Q96JB2 828 aa20.57■□□□□ 0.88
CUX1-213ENST00000549414 DIAPH1O60610 1272 aaKnown RBP20.56■□□□□ 0.88
CUX1-213ENST00000549414 RIPK4P57078 832 aa20.55■□□□□ 0.88
CUX1-213ENST00000549414 HMOX1P09601 288 aa20.55■□□□□ 0.88
CUX1-213ENST00000549414 PANK1Q8TE04 598 aa20.55■□□□□ 0.88
CUX1-213ENST00000549414 ZKSCAN2Q63HK3 967 aa20.54■□□□□ 0.88
CUX1-213ENST00000549414 CCDC9Q9Y3X0 531 aaKnown RBP20.54■□□□□ 0.88
CUX1-213ENST00000549414 RUNDC1Q96C34 613 aa20.54■□□□□ 0.88
CUX1-213ENST00000549414 TRIM44Q96DX7 344 aaPredicted RBP20.54■□□□□ 0.88
CUX1-213ENST00000549414 TAOK2Q9UL54 1235 aa20.53■□□□□ 0.88
CUX1-213ENST00000549414 CCDC141Q6ZP82 1450 aa20.53■□□□□ 0.88
CUX1-213ENST00000549414 TCP11L2Q8N4U5 519 aa20.53■□□□□ 0.88
CUX1-213ENST00000549414 STK31Q9BXU1 1019 aa20.52■□□□□ 0.88
CUX1-213ENST00000549414 KCNJ4P48050 445 aa20.52■□□□□ 0.87
CUX1-213ENST00000549414 PLEKHH2Q8IVE3 1493 aa20.51■□□□□ 0.87
CUX1-213ENST00000549414 FAM161AQ3B820 660 aa20.51■□□□□ 0.87
CUX1-213ENST00000549414 GZF1Q9H116 711 aaPredicted RBP20.51■□□□□ 0.87
CUX1-213ENST00000549414 ERBINQ96RT1 1412 aa20.5■□□□□ 0.87
CUX1-213ENST00000549414 RPRD2Q5VT52 1461 aaKnown RBP20.49■□□□□ 0.87
CUX1-213ENST00000549414 PRAM1Q96QH2 718 aa20.49■□□□□ 0.87
CUX1-213ENST00000549414 LMOD3Q0VAK6 560 aa20.48■□□□□ 0.87
CUX1-213ENST00000549414 FANCIQ9NVI1 1328 aa20.48■□□□□ 0.87
CUX1-213ENST00000549414 GPATCH8Q9UKJ3 1502 aaKnown RBP20.48■□□□□ 0.87
CUX1-213ENST00000549414 FOXD4L1Q9NU39 408 aa20.47■□□□□ 0.87
CUX1-213ENST00000549414 ANKRD45Q5TZF3 282 aa20.45■□□□□ 0.86
CUX1-213ENST00000549414 BCAR3O75815 825 aa20.45■□□□□ 0.86
CUX1-213ENST00000549414 DZIP1LQ8IYY4 767 aaKnown RBP20.45■□□□□ 0.86
CUX1-213ENST00000549414 NUP153P49790 1475 aaKnown RBP20.44■□□□□ 0.86
CUX1-213ENST00000549414 UGGT2Q9NYU1 1516 aa20.44■□□□□ 0.86
CUX1-213ENST00000549414 NECTIN2Q92692 538 aa20.43■□□□□ 0.86
CUX1-213ENST00000549414 FGD1P98174 961 aa20.42■□□□□ 0.86
CUX1-213ENST00000549414 KIF14Q15058 1648 aa20.42■□□□□ 0.86
CUX1-213ENST00000549414 NUTM2GQ5VZR2 741 aa20.41■□□□□ 0.86
CUX1-213ENST00000549414 NAP1L2Q9ULW6 460 aaPredicted RBP20.41■□□□□ 0.86
CUX1-213ENST00000549414 NGEFQ8N5V2 710 aa20.4■□□□□ 0.86
CUX1-213ENST00000549414 TXNDC2Q86VQ3 553 aa20.4■□□□□ 0.86
CUX1-213ENST00000549414 TSR2Q969E8 191 aaKnown RBP20.4■□□□□ 0.86
CUX1-213ENST00000549414 PLCB2Q00722 1185 aa20.39■□□□□ 0.86
CUX1-213ENST00000549414 TRIM6-TRIM34B2RNG4 842 aa20.39■□□□□ 0.85
CUX1-213ENST00000549414 CABP1Q9NZU7 370 aa20.38■□□□□ 0.85
CUX1-213ENST00000549414 ATP10BO94823 1461 aa20.38■□□□□ 0.85
CUX1-213ENST00000549414 PTMAP06454 111 aaKnown RBP20.38■□□□□ 0.85
CUX1-213ENST00000549414 ADGRF5Q8IZF2 1346 aa20.37■□□□□ 0.85
CUX1-213ENST00000549414 NOL8Q76FK4 1167 aaKnown RBP20.37■□□□□ 0.85
CUX1-213ENST00000549414 SMG6Q86US8 1419 aaKnown RBP20.37■□□□□ 0.85
CUX1-213ENST00000549414 HMMRO75330 724 aa20.36■□□□□ 0.85
CUX1-213ENST00000549414 MCCP23508 829 aa20.36■□□□□ 0.85
CUX1-213ENST00000549414 DDX19BQ9UMR2 479 aa20.36■□□□□ 0.85
CUX1-213ENST00000549414 PRKAR2BP31323 418 aa20.35■□□□□ 0.85
CUX1-213ENST00000549414 EXOSC9Q06265 439 aaKnown RBP20.35■□□□□ 0.85
CUX1-213ENST00000549414 SKAP1Q86WV1 359 aa20.35■□□□□ 0.85
CUX1-213ENST00000549414 LNPKQ9C0E8 428 aa20.35■□□□□ 0.85
CUX1-213ENST00000549414 ABCF1Q8NE71 845 aaKnown RBP eCLIP20.33■□□□□ 0.85
CUX1-213ENST00000549414 CDK19Q9BWU1 502 aa20.33■□□□□ 0.85
CUX1-213ENST00000549414 CTTNBP2Q8WZ74 1663 aa20.33■□□□□ 0.85
CUX1-213ENST00000549414 RAPGEF6Q8TEU7 1601 aa20.33■□□□□ 0.84
CUX1-213ENST00000549414 EIF2S2P20042 333 aaKnown RBP20.32■□□□□ 0.84
CUX1-213ENST00000549414 KIAA1211Q6ZU35 1233 aa20.32■□□□□ 0.84
CUX1-213ENST00000549414 SLC52A1Q9NWF4 448 aa20.31■□□□□ 0.84
CUX1-213ENST00000549414 DISP3Q9P2K9 1392 aa20.3■□□□□ 0.84
CUX1-213ENST00000549414 ADGRL1O94910 1474 aa20.29■□□□□ 0.84
CUX1-213ENST00000549414 C20orf194Q5TEA3 1177 aa20.29■□□□□ 0.84
CUX1-213ENST00000549414 SLC26A8Q96RN1 970 aa20.28■□□□□ 0.84
CUX1-213ENST00000549414 CHMP3Q9Y3E7 222 aa20.28■□□□□ 0.84
CUX1-213ENST00000549414 CD109Q6YHK3 1445 aa20.28■□□□□ 0.84
CUX1-213ENST00000549414 GNAI1P63096 354 aa20.27■□□□□ 0.84
CUX1-213ENST00000549414 NSD3Q9BZ95 1437 aa20.27■□□□□ 0.84
CUX1-213ENST00000549414 NLRP6P59044 892 aa20.27■□□□□ 0.84
CUX1-213ENST00000549414 TEFQ10587 303 aa20.27■□□□□ 0.84
CUX1-213ENST00000549414 GBP4Q96PP9 640 aa20.27■□□□□ 0.84
CUX1-213ENST00000549414 FOXD4L5Q5VV16 416 aaPredicted RBP20.27■□□□□ 0.83
CUX1-213ENST00000549414 FOXD4L4Q8WXT5 416 aaPredicted RBP20.27■□□□□ 0.83
CUX1-213ENST00000549414 CFAP44Q96MT7 982 aa20.27■□□□□ 0.83
CUX1-213ENST00000549414 CFAP43Q8NDM7 1665 aa20.26■□□□□ 0.83
CUX1-213ENST00000549414 KIF16BQ96L93 1317 aa20.26■□□□□ 0.83
CUX1-213ENST00000549414 FBXO31Q5XUX0 539 aaPredicted RBP20.26■□□□□ 0.83
CUX1-213ENST00000549414 RILPL2Q969X0 211 aa20.26■□□□□ 0.83
CUX1-213ENST00000549414 ADAMTS12P58397 1594 aa20.25■□□□□ 0.83
CUX1-213ENST00000549414 PSME1Q06323 249 aa20.25■□□□□ 0.83
CUX1-213ENST00000549414 WAPLQ7Z5K2 1190 aa20.25■□□□□ 0.83
CUX1-213ENST00000549414 IDI1Q13907 227 aa20.24■□□□□ 0.83
CUX1-213ENST00000549414 API5Q9BZZ5 524 aaKnown RBP20.24■□□□□ 0.83
CUX1-213ENST00000549414 TSPYL4Q9UJ04 414 aa20.24■□□□□ 0.83
CUX1-213ENST00000549414 KIF21AQ7Z4S6 1674 aa20.24■□□□□ 0.83
CUX1-213ENST00000549414 WDR62O43379 1518 aa20.24■□□□□ 0.83
CUX1-213ENST00000549414 FKBP5Q13451 457 aaPredicted RBP20.24■□□□□ 0.83
CUX1-213ENST00000549414 NAP1L5Q96NT1 182 aaPredicted RBP20.24■□□□□ 0.83
CUX1-213ENST00000549414 C1orf115Q9H7X2 142 aa20.23■□□□□ 0.83
CUX1-213ENST00000549414 DNTTIP2Q5QJE6 756 aaKnown RBP20.23■□□□□ 0.83
CUX1-213ENST00000549414 WWC1Q8IX03 1113 aa20.23■□□□□ 0.83
CUX1-213ENST00000549414 L1TD1Q5T7N2 865 aaKnown RBP20.22■□□□□ 0.83
CUX1-213ENST00000549414 RRS1Q15050 365 aaKnown RBP20.22■□□□□ 0.83
CUX1-213ENST00000549414 KIAA0556O60303 1618 aa20.22■□□□□ 0.83
CUX1-213ENST00000549414 TULP1O00294 542 aaPredicted RBP20.22■□□□□ 0.83
CUX1-213ENST00000549414 SLFN5Q08AF3 891 aa20.21■□□□□ 0.83
CUX1-213ENST00000549414 ZRSR1Q15695 479 aaKnown RBP20.21■□□□□ 0.83
Retrieved 100 of 20,778 RNA–protein pairs in 13.9 ms