RNA–Protein interactions for RNA: ENST00000547856.5

RAPGEF3-216, Transcript of Rap guanine nucleotide exchange factor 3, humanhuman

TSL 2

Gene RAPGEF3, Length 2,659 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RAPGEF3-216ENST00000547856 ARID3AQ99856 593 aa18.33■□□□□ 0.53
RAPGEF3-216ENST00000547856 KDM5DQ9BY66 1539 aa18.33■□□□□ 0.53
RAPGEF3-216ENST00000547856 CCDC141Q6ZP82 1450 aa18.33■□□□□ 0.52
RAPGEF3-216ENST00000547856 TBC1D2Q9BYX2 928 aa18.33■□□□□ 0.52
RAPGEF3-216ENST00000547856 GRPEL1Q9HAV7 217 aa18.33■□□□□ 0.52
RAPGEF3-216ENST00000547856 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP18.32■□□□□ 0.52
RAPGEF3-216ENST00000547856 PRDM4Q9UKN5 801 aa18.31■□□□□ 0.52
RAPGEF3-216ENST00000547856 KIAA1211Q6ZU35 1233 aa18.31■□□□□ 0.52
RAPGEF3-216ENST00000547856 ABCC2Q92887 1545 aa18.3■□□□□ 0.52
RAPGEF3-216ENST00000547856 TPM2P07951 284 aa18.3■□□□□ 0.52
RAPGEF3-216ENST00000547856 SYCP2Q9BX26 1530 aa18.3■□□□□ 0.52
RAPGEF3-216ENST00000547856 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.29■□□□□ 0.52
RAPGEF3-216ENST00000547856 ARHGAP5Q13017 1502 aa18.28■□□□□ 0.52
RAPGEF3-216ENST00000547856 DUSP27Q5VZP5 1158 aa18.28■□□□□ 0.52
RAPGEF3-216ENST00000547856 CALD1Q05682 793 aaKnown RBP18.27■□□□□ 0.52
RAPGEF3-216ENST00000547856 ADAMTS8Q9UP79 889 aa18.27■□□□□ 0.52
RAPGEF3-216ENST00000547856 RSPH4AQ5TD94 716 aa18.26■□□□□ 0.51
RAPGEF3-216ENST00000547856 KDM5CP41229 1560 aa18.26■□□□□ 0.51
RAPGEF3-216ENST00000547856 PARD3Q8TEW0 1356 aa18.25■□□□□ 0.51
RAPGEF3-216ENST00000547856 BCAR3O75815 825 aa18.25■□□□□ 0.51
RAPGEF3-216ENST00000547856 AAMPQ13685 434 aa18.25■□□□□ 0.51
RAPGEF3-216ENST00000547856 UPF2Q9HAU5 1272 aaKnown RBP18.25■□□□□ 0.51
RAPGEF3-216ENST00000547856 MYO5CQ9NQX4 1742 aa18.25■□□□□ 0.51
RAPGEF3-216ENST00000547856 UHRF1BP1Q6BDS2 1440 aa18.25■□□□□ 0.51
RAPGEF3-216ENST00000547856 FAM13BQ9NYF5 915 aa18.25■□□□□ 0.51
RAPGEF3-216ENST00000547856 FAM135AQ9P2D6 1515 aa18.24■□□□□ 0.51
RAPGEF3-216ENST00000547856 MAST1Q9Y2H9 1570 aa18.22■□□□□ 0.51
RAPGEF3-216ENST00000547856 CLASP1Q7Z460 1538 aa18.22■□□□□ 0.51
RAPGEF3-216ENST00000547856 ARHGEF12Q9NZN5 1544 aa18.22■□□□□ 0.51
RAPGEF3-216ENST00000547856 PLEKHH1Q9ULM0 1364 aa18.22■□□□□ 0.51
RAPGEF3-216ENST00000547856 CENPJQ9HC77 1338 aaPredicted RBP18.21■□□□□ 0.51
RAPGEF3-216ENST00000547856 ZCCHC11Q5TAX3 1644 aaKnown RBP18.21■□□□□ 0.51
RAPGEF3-216ENST00000547856 GAS2L3Q86XJ1 694 aa18.21■□□□□ 0.51
RAPGEF3-216ENST00000547856 RALGAPBQ86X10 1494 aa18.21■□□□□ 0.51
RAPGEF3-216ENST00000547856 GOLGA2Q08379 1002 aa18.2■□□□□ 0.5
RAPGEF3-216ENST00000547856 TBC1D32Q96NH3 1257 aa18.2■□□□□ 0.5
RAPGEF3-216ENST00000547856 BLMP54132 1417 aaPredicted RBP18.2■□□□□ 0.5
RAPGEF3-216ENST00000547856 PER1O15534 1290 aaPredicted RBP18.19■□□□□ 0.5
RAPGEF3-216ENST00000547856 CHMP5Q9NZZ3 219 aa18.18■□□□□ 0.5
RAPGEF3-216ENST00000547856 UNC13BO14795 1591 aa18.18■□□□□ 0.5
RAPGEF3-216ENST00000547856 RIPK4P57078 832 aa18.17■□□□□ 0.5
RAPGEF3-216ENST00000547856 NLRP1Q9C000 1473 aa18.17■□□□□ 0.5
RAPGEF3-216ENST00000547856 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.17■□□□□ 0.5
RAPGEF3-216ENST00000547856 PRDM10Q9NQV6 1147 aa18.17■□□□□ 0.5
RAPGEF3-216ENST00000547856 COG6Q9Y2V7 657 aa18.17■□□□□ 0.5
RAPGEF3-216ENST00000547856 ZMYM4Q5VZL5 1548 aa18.17■□□□□ 0.5
RAPGEF3-216ENST00000547856 PLEKHH2Q8IVE3 1493 aa18.17■□□□□ 0.5
RAPGEF3-216ENST00000547856 ZHX1Q9UKY1 873 aaPredicted RBP18.16■□□□□ 0.5
RAPGEF3-216ENST00000547856 MAPK8IP3Q9UPT6 1336 aa18.16■□□□□ 0.5
RAPGEF3-216ENST00000547856 PLXNC1O60486 1568 aa18.16■□□□□ 0.5
RAPGEF3-216ENST00000547856 WDR43Q15061 677 aaKnown RBP eCLIP18.16■□□□□ 0.5
RAPGEF3-216ENST00000547856 CCDC146Q8IYE0 955 aa18.16■□□□□ 0.5
RAPGEF3-216ENST00000547856 PANK1Q8TE04 598 aa18.16■□□□□ 0.5
RAPGEF3-216ENST00000547856 PANK3Q9H999 370 aa18.16■□□□□ 0.5
RAPGEF3-216ENST00000547856 SPINK5Q9NQ38 1064 aaPredicted RBP18.16■□□□□ 0.5
RAPGEF3-216ENST00000547856 PLCH2O75038 1416 aa18.15■□□□□ 0.5
RAPGEF3-216ENST00000547856 CANXP27824 592 aaKnown RBP18.15■□□□□ 0.5
RAPGEF3-216ENST00000547856 PLA2R1Q13018 1463 aa18.15■□□□□ 0.5
RAPGEF3-216ENST00000547856 FGD1P98174 961 aa18.15■□□□□ 0.5
RAPGEF3-216ENST00000547856 R3HCC1Q9Y3T6 440 aaKnown RBP18.15■□□□□ 0.5
RAPGEF3-216ENST00000547856 UHRF1BP1LA0JNW5 1464 aa18.14■□□□□ 0.5
RAPGEF3-216ENST00000547856 CCDC144AA2RUR9 1427 aa18.12■□□□□ 0.49
RAPGEF3-216ENST00000547856 MFAP1P55081 439 aaKnown RBP18.12■□□□□ 0.49
RAPGEF3-216ENST00000547856 SLFN5Q08AF3 891 aa18.12■□□□□ 0.49
RAPGEF3-216ENST00000547856 EIF3AQ14152 1382 aaKnown RBP18.12■□□□□ 0.49
RAPGEF3-216ENST00000547856 IQGAP3Q86VI3 1631 aa18.12■□□□□ 0.49
RAPGEF3-216ENST00000547856 DDX11L8A8MPP1 907 aa18.11■□□□□ 0.49
RAPGEF3-216ENST00000547856 CLUAP1Q96AJ1 413 aa18.11■□□□□ 0.49
RAPGEF3-216ENST00000547856 EFCAB2Q5VUJ9 269 aa18.11■□□□□ 0.49
RAPGEF3-216ENST00000547856 DUOX2Q9NRD8 1548 aa18.1■□□□□ 0.49
RAPGEF3-216ENST00000547856 MSNP26038 577 aaKnown RBP18.1■□□□□ 0.49
RAPGEF3-216ENST00000547856 RGL3Q3MIN7 710 aa18.1■□□□□ 0.49
RAPGEF3-216ENST00000547856 TRAPPC8Q9Y2L5 1435 aa18.09■□□□□ 0.49
RAPGEF3-216ENST00000547856 OFD1O75665 1012 aa18.09■□□□□ 0.49
RAPGEF3-216ENST00000547856 ABCC1P33527 1531 aa18.09■□□□□ 0.49
RAPGEF3-216ENST00000547856 TRPM1Q7Z4N2 1603 aa18.08■□□□□ 0.49
RAPGEF3-216ENST00000547856 ZSCAN30Q86W11 494 aa18.08■□□□□ 0.48
RAPGEF3-216ENST00000547856 C22orf23Q9BZE7 217 aa18.07■□□□□ 0.48
RAPGEF3-216ENST00000547856 PRAG1Q86YV5 1406 aa18.07■□□□□ 0.48
RAPGEF3-216ENST00000547856 PDZRN3Q9UPQ7 1066 aa18.07■□□□□ 0.48
RAPGEF3-216ENST00000547856 MAGI2Q86UL8 1455 aa18.07■□□□□ 0.48
RAPGEF3-216ENST00000547856 NBPF1Q3BBV0 1214 aa18.06■□□□□ 0.48
RAPGEF3-216ENST00000547856 PDZRN4Q6ZMN7 1036 aaPredicted RBP18.06■□□□□ 0.48
RAPGEF3-216ENST00000547856 FOXD4L1Q9NU39 408 aa18.06■□□□□ 0.48
RAPGEF3-216ENST00000547856 A2MP01023 1474 aa18.06■□□□□ 0.48
RAPGEF3-216ENST00000547856 ZNF521Q96K83 1311 aa18.06■□□□□ 0.48
RAPGEF3-216ENST00000547856 ERBINQ96RT1 1412 aa18.06■□□□□ 0.48
RAPGEF3-216ENST00000547856 NASPP49321 788 aaPredicted RBP18.05■□□□□ 0.48
RAPGEF3-216ENST00000547856 TNPO1Q92973 898 aaKnown RBP18.05■□□□□ 0.48
RAPGEF3-216ENST00000547856 ISY1Q9ULR0 285 aaKnown RBP18.05■□□□□ 0.48
RAPGEF3-216ENST00000547856 APAF1O14727 1248 aa18.05■□□□□ 0.48
RAPGEF3-216ENST00000547856 HSCBQ8IWL3 235 aa18.05■□□□□ 0.48
RAPGEF3-216ENST00000547856 CGNL1Q0VF96 1302 aa18.04■□□□□ 0.48
RAPGEF3-216ENST00000547856 UQCRHLA0A096LP55 91 aa18.04■□□□□ 0.48
RAPGEF3-216ENST00000547856 UQCRHP07919 91 aa18.04■□□□□ 0.48
RAPGEF3-216ENST00000547856 CCDC173Q0VFZ6 552 aa18.04■□□□□ 0.48
RAPGEF3-216ENST00000547856 AFAP1Q8N556 730 aa18.04■□□□□ 0.48
RAPGEF3-216ENST00000547856 DMRT2Q9Y5R5 561 aa18.04■□□□□ 0.48
RAPGEF3-216ENST00000547856 XPCQ01831 940 aaPredicted RBP18.03■□□□□ 0.48
RAPGEF3-216ENST00000547856 ANP32BQ92688 251 aaKnown RBP18.03■□□□□ 0.48
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms