RNA–Protein interactions for RNA: ENST00000546084.5

TRAF1-203, Transcript of TNF receptor associated factor 1, humanhuman

TSL 2 BASIC

Gene TRAF1, Length 3,715 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-203ENST00000546084 SMC4Q9NTJ3 1288 aa12.55□□□□□ -0.4
TRAF1-203ENST00000546084 GPATCH8Q9UKJ3 1502 aaKnown RBP12.55□□□□□ -0.4
TRAF1-203ENST00000546084 GSE1Q14687 1217 aa12.55□□□□□ -0.4
TRAF1-203ENST00000546084 SCAPERQ9BY12 1400 aa12.55□□□□□ -0.4
TRAF1-203ENST00000546084 HMOX1P09601 288 aa12.54□□□□□ -0.4
TRAF1-203ENST00000546084 PZPP20742 1482 aa12.54□□□□□ -0.4
TRAF1-203ENST00000546084 GRIN2AQ12879 1464 aa12.54□□□□□ -0.4
TRAF1-203ENST00000546084 RSPH4AQ5TD94 716 aa12.54□□□□□ -0.4
TRAF1-203ENST00000546084 LMOD2Q6P5Q4 547 aa12.53□□□□□ -0.4
TRAF1-203ENST00000546084 PLEKHH2Q8IVE3 1493 aa12.53□□□□□ -0.4
TRAF1-203ENST00000546084 ZNF428Q96B54 188 aa12.52□□□□□ -0.4
TRAF1-203ENST00000546084 ADGRF5Q8IZF2 1346 aa12.52□□□□□ -0.4
TRAF1-203ENST00000546084 IFT140Q96RY7 1462 aa12.52□□□□□ -0.41
TRAF1-203ENST00000546084 TCP11L2Q8N4U5 519 aa12.52□□□□□ -0.41
TRAF1-203ENST00000546084 TNNQ9UQP3 1299 aa12.51□□□□□ -0.41
TRAF1-203ENST00000546084 LRPPRCP42704 1394 aaKnown RBP12.51□□□□□ -0.41
TRAF1-203ENST00000546084 SPINK5Q9NQ38 1064 aaPredicted RBP12.5□□□□□ -0.41
TRAF1-203ENST00000546084 MAGI1Q96QZ7 1491 aaPredicted RBP12.5□□□□□ -0.41
TRAF1-203ENST00000546084 FAM161AQ3B820 660 aa12.5□□□□□ -0.41
TRAF1-203ENST00000546084 PDE4CQ08493 712 aa12.49□□□□□ -0.41
TRAF1-203ENST00000546084 CENPQQ7L2Z9 268 aaPredicted RBP12.49□□□□□ -0.41
TRAF1-203ENST00000546084 NCLP19338 710 aaKnown RBP12.49□□□□□ -0.41
TRAF1-203ENST00000546084 THUMPD2Q9BTF0 503 aaKnown RBP12.48□□□□□ -0.41
TRAF1-203ENST00000546084 SYNJ2O15056 1496 aa12.48□□□□□ -0.41
TRAF1-203ENST00000546084 WDR62O43379 1518 aa12.48□□□□□ -0.41
TRAF1-203ENST00000546084 FRAT2O75474 233 aaPredicted RBP12.48□□□□□ -0.41
TRAF1-203ENST00000546084 NECTIN2Q92692 538 aa12.48□□□□□ -0.41
TRAF1-203ENST00000546084 DMRT2Q9Y5R5 561 aa12.48□□□□□ -0.41
TRAF1-203ENST00000546084 ATP10BO94823 1461 aa12.48□□□□□ -0.41
TRAF1-203ENST00000546084 BCORL1Q5H9F3 1711 aa12.48□□□□□ -0.41
TRAF1-203ENST00000546084 ABCA5Q8WWZ7 1642 aa12.47□□□□□ -0.41
TRAF1-203ENST00000546084 LTV1Q96GA3 475 aaPredicted RBP12.47□□□□□ -0.41
TRAF1-203ENST00000546084 C1orf115Q9H7X2 142 aa12.47□□□□□ -0.41
TRAF1-203ENST00000546084 VSIG10Q8N0Z9 540 aa12.47□□□□□ -0.41
TRAF1-203ENST00000546084 ERBINQ96RT1 1412 aa12.46□□□□□ -0.41
TRAF1-203ENST00000546084 PER1O15534 1290 aaPredicted RBP12.46□□□□□ -0.41
TRAF1-203ENST00000546084 TESK2Q96S53 571 aa12.46□□□□□ -0.41
TRAF1-203ENST00000546084 DNMT1P26358 1616 aaKnown RBP12.46□□□□□ -0.42
TRAF1-203ENST00000546084 BECN1Q14457 450 aa12.46□□□□□ -0.42
TRAF1-203ENST00000546084 RALGAPBQ86X10 1494 aa12.45□□□□□ -0.42
TRAF1-203ENST00000546084 TAOK2Q9UL54 1235 aa12.45□□□□□ -0.42
TRAF1-203ENST00000546084 NUTM2GQ5VZR2 741 aa12.44□□□□□ -0.42
TRAF1-203ENST00000546084 LNPKQ9C0E8 428 aa12.44□□□□□ -0.42
TRAF1-203ENST00000546084 E9PSI1 815 aa12.44□□□□□ -0.42
TRAF1-203ENST00000546084 RIPK4P57078 832 aa12.44□□□□□ -0.42
TRAF1-203ENST00000546084 FOXD4L5Q5VV16 416 aaPredicted RBP12.44□□□□□ -0.42
TRAF1-203ENST00000546084 NOL8Q76FK4 1167 aaKnown RBP12.44□□□□□ -0.42
TRAF1-203ENST00000546084 FOXD4L4Q8WXT5 416 aaPredicted RBP12.44□□□□□ -0.42
TRAF1-203ENST00000546084 PARD3Q8TEW0 1356 aa12.44□□□□□ -0.42
TRAF1-203ENST00000546084 DISP1Q96F81 1524 aa12.44□□□□□ -0.42
TRAF1-203ENST00000546084 SLC4A10Q6U841 1118 aa12.44□□□□□ -0.42
TRAF1-203ENST00000546084 EXOSC9Q06265 439 aaKnown RBP12.42□□□□□ -0.42
TRAF1-203ENST00000546084 DUSP27Q5VZP5 1158 aa12.42□□□□□ -0.42
TRAF1-203ENST00000546084 MYH16Q9H6N6 1097 aa12.42□□□□□ -0.42
TRAF1-203ENST00000546084 IGHDP01880 384 aa12.41□□□□□ -0.42
TRAF1-203ENST00000546084 FOXD4L6Q3SYB3 417 aaPredicted RBP12.41□□□□□ -0.42
TRAF1-203ENST00000546084 FOXD4L3Q6VB84 417 aaPredicted RBP12.41□□□□□ -0.42
TRAF1-203ENST00000546084 PRAM1Q96QH2 718 aa12.41□□□□□ -0.42
TRAF1-203ENST00000546084 KDM5CP41229 1560 aa12.41□□□□□ -0.42
TRAF1-203ENST00000546084 FBXO31Q5XUX0 539 aaPredicted RBP12.41□□□□□ -0.42
TRAF1-203ENST00000546084 MBD5Q9P267 1494 aa12.4□□□□□ -0.42
TRAF1-203ENST00000546084 HDGFL2Q7Z4V5 671 aaPredicted RBP12.4□□□□□ -0.42
TRAF1-203ENST00000546084 WAPLQ7Z5K2 1190 aa12.4□□□□□ -0.42
TRAF1-203ENST00000546084 CGNL1Q0VF96 1302 aa12.4□□□□□ -0.42
TRAF1-203ENST00000546084 EIF3AQ14152 1382 aaKnown RBP12.4□□□□□ -0.42
TRAF1-203ENST00000546084 KIF14Q15058 1648 aa12.4□□□□□ -0.42
TRAF1-203ENST00000546084 ANKRD45Q5TZF3 282 aa12.4□□□□□ -0.42
TRAF1-203ENST00000546084 UHRF1BP1Q6BDS2 1440 aa12.39□□□□□ -0.43
TRAF1-203ENST00000546084 WWC1Q8IX03 1113 aa12.39□□□□□ -0.43
TRAF1-203ENST00000546084 CARD14Q9BXL6 1004 aa12.39□□□□□ -0.43
TRAF1-203ENST00000546084 RWDD1Q9H446 243 aaPredicted RBP12.39□□□□□ -0.43
TRAF1-203ENST00000546084 CABP1Q9NZU7 370 aa12.39□□□□□ -0.43
TRAF1-203ENST00000546084 PLEKHH1Q9ULM0 1364 aa12.39□□□□□ -0.43
TRAF1-203ENST00000546084 HSP90AB1P08238 724 aaKnown RBP12.39□□□□□ -0.43
TRAF1-203ENST00000546084 SLFN5Q08AF3 891 aa12.39□□□□□ -0.43
TRAF1-203ENST00000546084 A0A0G2JS52 829 aa12.38□□□□□ -0.43
TRAF1-203ENST00000546084 DCTN1Q14203 1278 aa12.38□□□□□ -0.43
TRAF1-203ENST00000546084 C8orf34Q49A92 452 aa12.38□□□□□ -0.43
TRAF1-203ENST00000546084 AMER1Q5JTC6 1135 aaPredicted RBP12.38□□□□□ -0.43
TRAF1-203ENST00000546084 RBM33Q96EV2 1170 aaKnown RBP12.38□□□□□ -0.43
TRAF1-203ENST00000546084 TARBP1Q13395 1621 aaKnown RBP12.38□□□□□ -0.43
TRAF1-203ENST00000546084 RUNDC1Q96C34 613 aa12.38□□□□□ -0.43
TRAF1-203ENST00000546084 PDZRN3Q9UPQ7 1066 aa12.37□□□□□ -0.43
TRAF1-203ENST00000546084 CCDC141Q6ZP82 1450 aa12.37□□□□□ -0.43
TRAF1-203ENST00000546084 TXNDC2Q86VQ3 553 aa12.37□□□□□ -0.43
TRAF1-203ENST00000546084 RAPGEF6Q8TEU7 1601 aa12.37□□□□□ -0.43
TRAF1-203ENST00000546084 CFAP65Q6ZU64 1925 aaKnown RBP12.37□□□□□ -0.43
TRAF1-203ENST00000546084 RRS1Q15050 365 aaKnown RBP12.37□□□□□ -0.43
TRAF1-203ENST00000546084 EVC2Q86UK5 1308 aa12.36□□□□□ -0.43
TRAF1-203ENST00000546084 PDIA4P13667 645 aaKnown RBP12.36□□□□□ -0.43
TRAF1-203ENST00000546084 TRAPPC8Q9Y2L5 1435 aa12.36□□□□□ -0.43
TRAF1-203ENST00000546084 VGFO15240 615 aaPredicted RBP12.36□□□□□ -0.43
TRAF1-203ENST00000546084 FAM69CQ0P6D2 419 aa12.36□□□□□ -0.43
TRAF1-203ENST00000546084 ZKSCAN2Q63HK3 967 aa12.36□□□□□ -0.43
TRAF1-203ENST00000546084 TERF2IPQ9NYB0 399 aa12.36□□□□□ -0.43
TRAF1-203ENST00000546084 OSCARQ8IYS5 282 aa12.36□□□□□ -0.43
TRAF1-203ENST00000546084 DZIP1LQ8IYY4 767 aaKnown RBP12.36□□□□□ -0.43
TRAF1-203ENST00000546084 SEC24BO95487 1268 aa12.35□□□□□ -0.43
TRAF1-203ENST00000546084 PRKAR2BP31323 418 aa12.35□□□□□ -0.43
TRAF1-203ENST00000546084 SYCP2Q9BX26 1530 aa12.35□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms