RNA–Protein interactions for RNA: ENST00000543633.5

VPS33A-208, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 5

Gene VPS33A, Length 2,019 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-208ENST00000543633 NPC1L1Q9UHC9 1359 aa18.12■□□□□ 0.49
VPS33A-208ENST00000543633 PIK3C2GO75747 1445 aa18.12■□□□□ 0.49
VPS33A-208ENST00000543633 RGL3Q3MIN7 710 aa18.11■□□□□ 0.49
VPS33A-208ENST00000543633 NBR1Q14596 966 aa18.11■□□□□ 0.49
VPS33A-208ENST00000543633 MYOM1P52179 1685 aa18.1■□□□□ 0.49
VPS33A-208ENST00000543633 USP35Q9P2H5 1018 aa18.1■□□□□ 0.49
VPS33A-208ENST00000543633 GLI2P10070 1586 aa18.1■□□□□ 0.49
VPS33A-208ENST00000543633 SCAF11Q99590 1463 aaKnown RBP18.1■□□□□ 0.49
VPS33A-208ENST00000543633 CDCA8Q53HL2 280 aa18.1■□□□□ 0.49
VPS33A-208ENST00000543633 RTEL1-TNFRSF6BF6WH68 1400 aa18.09■□□□□ 0.49
VPS33A-208ENST00000543633 ASXL1Q8IXJ9 1541 aa18.09■□□□□ 0.49
VPS33A-208ENST00000543633 TET3O43151 1660 aa18.09■□□□□ 0.49
VPS33A-208ENST00000543633 MAP3K4Q9Y6R4 1608 aa18.09■□□□□ 0.49
VPS33A-208ENST00000543633 CC2D1BQ5T0F9 858 aaKnown RBP18.08■□□□□ 0.49
VPS33A-208ENST00000543633 CDCA7LQ96GN5 454 aa18.08■□□□□ 0.49
VPS33A-208ENST00000543633 ADGRL1O94910 1474 aa18.08■□□□□ 0.48
VPS33A-208ENST00000543633 PTPRTO14522 1441 aa18.08■□□□□ 0.48
VPS33A-208ENST00000543633 SENP3-EIF4A1A0A087X0R7 540 aa18.08■□□□□ 0.48
VPS33A-208ENST00000543633 KDM5AP29375 1690 aaKnown RBP18.07■□□□□ 0.48
VPS33A-208ENST00000543633 DDRGK1Q96HY6 314 aa18.06■□□□□ 0.48
VPS33A-208ENST00000543633 CFAP74Q9C0B2 1584 aa18.06■□□□□ 0.48
VPS33A-208ENST00000543633 DIP2BQ9P265 1576 aa18.06■□□□□ 0.48
VPS33A-208ENST00000543633 AFAP1Q8N556 730 aa18.06■□□□□ 0.48
VPS33A-208ENST00000543633 GRWD1Q9BQ67 446 aaKnown RBP eCLIP18.06■□□□□ 0.48
VPS33A-208ENST00000543633 CLTCL1P53675 1640 aa18.05■□□□□ 0.48
VPS33A-208ENST00000543633 ZFYVE16Q7Z3T8 1539 aa18.05■□□□□ 0.48
VPS33A-208ENST00000543633 ZNF521Q96K83 1311 aa18.04■□□□□ 0.48
VPS33A-208ENST00000543633 EIF3AQ14152 1382 aaKnown RBP18.04■□□□□ 0.48
VPS33A-208ENST00000543633 CRBNQ96SW2 442 aa18.04■□□□□ 0.48
VPS33A-208ENST00000543633 SALL2Q9Y467 1007 aaPredicted RBP18.04■□□□□ 0.48
VPS33A-208ENST00000543633 VWDEQ8N2E2 1590 aa18.04■□□□□ 0.48
VPS33A-208ENST00000543633 PPM1GO15355 546 aaPredicted RBP18.03■□□□□ 0.48
VPS33A-208ENST00000543633 KDM2BQ8NHM5 1336 aa18.03■□□□□ 0.48
VPS33A-208ENST00000543633 INO80Q9ULG1 1556 aaPredicted RBP18.02■□□□□ 0.48
VPS33A-208ENST00000543633 NEO1Q92859 1461 aa18.02■□□□□ 0.48
VPS33A-208ENST00000543633 SLC24A1O60721 1099 aa18.02■□□□□ 0.48
VPS33A-208ENST00000543633 PPP2R1AP30153 589 aa18.02■□□□□ 0.48
VPS33A-208ENST00000543633 KNSTRNQ9Y448 316 aa18.02■□□□□ 0.48
VPS33A-208ENST00000543633 AMER1Q5JTC6 1135 aaPredicted RBP18.01■□□□□ 0.47
VPS33A-208ENST00000543633 CENPQQ7L2Z9 268 aaPredicted RBP18.01■□□□□ 0.47
VPS33A-208ENST00000543633 GOLGA6L2Q8N9W4 650 aaPredicted RBP18.01■□□□□ 0.47
VPS33A-208ENST00000543633 WDR43Q15061 677 aaKnown RBP eCLIP18.01■□□□□ 0.47
VPS33A-208ENST00000543633 SPAG9O60271 1321 aaKnown RBP18.01■□□□□ 0.47
VPS33A-208ENST00000543633 PLEKHH1Q9ULM0 1364 aa18■□□□□ 0.47
VPS33A-208ENST00000543633 MYOM2P54296 1465 aa18■□□□□ 0.47
VPS33A-208ENST00000543633 DUSP27Q5VZP5 1158 aa17.99■□□□□ 0.47
VPS33A-208ENST00000543633 NGEFQ8N5V2 710 aa17.99■□□□□ 0.47
VPS33A-208ENST00000543633 ADAMTS8Q9UP79 889 aa17.99■□□□□ 0.47
VPS33A-208ENST00000543633 ZNF518AQ6AHZ1 1483 aa17.99■□□□□ 0.47
VPS33A-208ENST00000543633 ATP7AQ04656 1500 aa17.99■□□□□ 0.47
VPS33A-208ENST00000543633 MYO3AQ8NEV4 1616 aa17.99■□□□□ 0.47
VPS33A-208ENST00000543633 NPM2Q86SE8 214 aaKnown RBP17.98■□□□□ 0.47
VPS33A-208ENST00000543633 POGZQ7Z3K3 1410 aa17.98■□□□□ 0.47
VPS33A-208ENST00000543633 FAM69CQ0P6D2 419 aa17.98■□□□□ 0.47
VPS33A-208ENST00000543633 IFT172Q9UG01 1749 aa17.97■□□□□ 0.47
VPS33A-208ENST00000543633 PLIN1O60240 522 aa17.97■□□□□ 0.47
VPS33A-208ENST00000543633 GOLGA2Q08379 1002 aa17.97■□□□□ 0.47
VPS33A-208ENST00000543633 VIRMAQ69YN4 1812 aaKnown RBP17.97■□□□□ 0.47
VPS33A-208ENST00000543633 KIDINS220Q9ULH0 1771 aa17.96■□□□□ 0.46
VPS33A-208ENST00000543633 PPRC1Q5VV67 1664 aaKnown RBP17.95■□□□□ 0.46
VPS33A-208ENST00000543633 TRMT2AQ8IZ69 625 aaKnown RBP17.94■□□□□ 0.46
VPS33A-208ENST00000543633 KIF13AQ9H1H9 1805 aa17.94■□□□□ 0.46
VPS33A-208ENST00000543633 ABCA6Q8N139 1617 aa17.94■□□□□ 0.46
VPS33A-208ENST00000543633 NINLQ9Y2I6 1382 aa17.94■□□□□ 0.46
VPS33A-208ENST00000543633 NKTRP30414 1462 aaKnown RBP17.93■□□□□ 0.46
VPS33A-208ENST00000543633 KANK1Q14678 1352 aa17.93■□□□□ 0.46
VPS33A-208ENST00000543633 KIF1BO60333 1816 aa17.93■□□□□ 0.46
VPS33A-208ENST00000543633 SLFN5Q08AF3 891 aa17.93■□□□□ 0.46
VPS33A-208ENST00000543633 MLH3Q9UHC1 1453 aa17.92■□□□□ 0.46
VPS33A-208ENST00000543633 SBNO2Q9Y2G9 1366 aa17.92■□□□□ 0.46
VPS33A-208ENST00000543633 NEFMP07197 916 aa17.91■□□□□ 0.46
VPS33A-208ENST00000543633 RICTORQ6R327 1708 aa17.9■□□□□ 0.46
VPS33A-208ENST00000543633 FAM161AQ3B820 660 aa17.9■□□□□ 0.46
VPS33A-208ENST00000543633 MROH1Q8NDA8 1641 aa17.9■□□□□ 0.46
VPS33A-208ENST00000543633 ERVK-7P63135 1459 aa17.9■□□□□ 0.46
VPS33A-208ENST00000543633 C20orf194Q5TEA3 1177 aa17.89■□□□□ 0.46
VPS33A-208ENST00000543633 HECW2Q9P2P5 1572 aa17.89■□□□□ 0.45
VPS33A-208ENST00000543633 SETBP1Q9Y6X0 1596 aa17.89■□□□□ 0.45
VPS33A-208ENST00000543633 TSPOAP1O95153 1857 aa17.89■□□□□ 0.45
VPS33A-208ENST00000543633 NRXN1Q9ULB1 1477 aa17.88■□□□□ 0.45
VPS33A-208ENST00000543633 RAPGEF3O95398 923 aa17.88■□□□□ 0.45
VPS33A-208ENST00000543633 EFCAB6Q5THR3 1501 aa17.88■□□□□ 0.45
VPS33A-208ENST00000543633 FRMPD1Q5SYB0 1578 aa17.87■□□□□ 0.45
VPS33A-208ENST00000543633 USP32Q8NFA0 1604 aa17.86■□□□□ 0.45
VPS33A-208ENST00000543633 LMTK2Q8IWU2 1503 aa17.86■□□□□ 0.45
VPS33A-208ENST00000543633 ZC3H13Q5T200 1668 aaKnown RBP17.86■□□□□ 0.45
VPS33A-208ENST00000543633 E9PSI1 815 aa17.86■□□□□ 0.45
VPS33A-208ENST00000543633 LAS1LQ9Y4W2 734 aaKnown RBP17.86■□□□□ 0.45
VPS33A-208ENST00000543633 POLR3AO14802 1390 aaPredicted RBP17.85■□□□□ 0.45
VPS33A-208ENST00000543633 C8orf34Q49A92 452 aa17.84■□□□□ 0.45
VPS33A-208ENST00000543633 MROH2AA6NES4 1674 aa17.83■□□□□ 0.44
VPS33A-208ENST00000543633 SHPRHQ149N8 1683 aa17.83■□□□□ 0.44
VPS33A-208ENST00000543633 ADGRB3O60242 1522 aa17.81■□□□□ 0.44
VPS33A-208ENST00000543633 CGNL1Q0VF96 1302 aa17.81■□□□□ 0.44
VPS33A-208ENST00000543633 ZMYM3Q14202 1370 aa17.81■□□□□ 0.44
VPS33A-208ENST00000543633 AAMPQ13685 434 aa17.81■□□□□ 0.44
VPS33A-208ENST00000543633 PDE3AQ14432 1141 aa17.81■□□□□ 0.44
VPS33A-208ENST00000543633 DIP2CQ9Y2E4 1556 aa17.8■□□□□ 0.44
VPS33A-208ENST00000543633 DNAJC5Q9H3Z4 198 aa17.79■□□□□ 0.44
VPS33A-208ENST00000543633 DAXXQ9UER7 740 aaPredicted RBP17.79■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms