RNA–Protein interactions for RNA: ENST00000541589.5

LMO3-226, Transcript of LIM domain only 3, humanhuman

TSL 2

Gene LMO3, Length 1,499 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LMO3-226ENST00000541589 FAM135BQ49AJ0 1406 aa12.34□□□□□ -0.43
LMO3-226ENST00000541589 ZC3H13Q5T200 1668 aaKnown RBP12.32□□□□□ -0.44
LMO3-226ENST00000541589 LRRC9Q6ZRR7 1453 aa12.32□□□□□ -0.44
LMO3-226ENST00000541589 PRKAR2AP13861 404 aaKnown RBP12.32□□□□□ -0.44
LMO3-226ENST00000541589 XIRP1Q702N8 1843 aaKnown RBP12.29□□□□□ -0.44
LMO3-226ENST00000541589 GABBR2O75899 941 aa12.28□□□□□ -0.44
LMO3-226ENST00000541589 STAG3Q9UJ98 1225 aa12.28□□□□□ -0.44
LMO3-226ENST00000541589 RRBP1Q9P2E9 1410 aaKnown RBP12.28□□□□□ -0.44
LMO3-226ENST00000541589 SCAF11Q99590 1463 aaKnown RBP12.28□□□□□ -0.44
LMO3-226ENST00000541589 MTUS2Q5JR59 1369 aa12.27□□□□□ -0.44
LMO3-226ENST00000541589 ERVK-7P63135 1459 aa12.27□□□□□ -0.45
LMO3-226ENST00000541589 NCOA2Q15596 1464 aa12.27□□□□□ -0.45
LMO3-226ENST00000541589 CCDC141Q6ZP82 1450 aa12.27□□□□□ -0.45
LMO3-226ENST00000541589 ARHGAP23Q9P227 1491 aa12.27□□□□□ -0.45
LMO3-226ENST00000541589 LTKP29376 864 aa12.27□□□□□ -0.45
LMO3-226ENST00000541589 RSPH4AQ5TD94 716 aa12.26□□□□□ -0.45
LMO3-226ENST00000541589 CHADLQ6NUI6 762 aa12.26□□□□□ -0.45
LMO3-226ENST00000541589 ABCC3O15438 1527 aa12.26□□□□□ -0.45
LMO3-226ENST00000541589 SLIT1O75093 1534 aa12.26□□□□□ -0.45
LMO3-226ENST00000541589 SETD1AO15047 1707 aaKnown RBP12.25□□□□□ -0.45
LMO3-226ENST00000541589 ZEB1P37275 1124 aaPredicted RBP12.25□□□□□ -0.45
LMO3-226ENST00000541589 UBR1Q8IWV7 1749 aa12.24□□□□□ -0.45
LMO3-226ENST00000541589 TXNDC2Q86VQ3 553 aa12.23□□□□□ -0.45
LMO3-226ENST00000541589 UPF1Q92900 1129 aaKnown RBP eCLIP12.23□□□□□ -0.45
LMO3-226ENST00000541589 TMEM94Q12767 1356 aa12.22□□□□□ -0.45
LMO3-226ENST00000541589 FKBP8Q14318 412 aa12.22□□□□□ -0.45
LMO3-226ENST00000541589 ROBO1Q9Y6N7 1651 aa12.22□□□□□ -0.45
LMO3-226ENST00000541589 EHBP1L1Q8N3D4 1523 aa12.21□□□□□ -0.45
LMO3-226ENST00000541589 CAMSAP2Q08AD1 1489 aa12.21□□□□□ -0.45
LMO3-226ENST00000541589 KCNA6P17658 529 aa12.2□□□□□ -0.46
LMO3-226ENST00000541589 MROH1Q8NDA8 1641 aa12.19□□□□□ -0.46
LMO3-226ENST00000541589 JCADQ9P266 1359 aa12.19□□□□□ -0.46
LMO3-226ENST00000541589 ARHGEF5Q12774 1597 aa12.19□□□□□ -0.46
LMO3-226ENST00000541589 C19orf67A6NJJ6 358 aa12.19□□□□□ -0.46
LMO3-226ENST00000541589 EID1Q9Y6B2 187 aa12.18□□□□□ -0.46
LMO3-226ENST00000541589 TSPY4P0CV99 314 aa12.17□□□□□ -0.46
LMO3-226ENST00000541589 TSPY10P0CW01 314 aa12.17□□□□□ -0.46
LMO3-226ENST00000541589 TMEM2Q9UHN6 1383 aa12.17□□□□□ -0.46
LMO3-226ENST00000541589 ARHGAP31Q2M1Z3 1444 aa12.17□□□□□ -0.46
LMO3-226ENST00000541589 PRDM15P57071 1507 aaPredicted RBP12.16□□□□□ -0.46
LMO3-226ENST00000541589 CREBZFQ9NS37 354 aa12.16□□□□□ -0.46
LMO3-226ENST00000541589 EIF2AK4Q9P2K8 1649 aaKnown RBP12.16□□□□□ -0.46
LMO3-226ENST00000541589 PROSER2Q86WR7 435 aaPredicted RBP12.15□□□□□ -0.46
LMO3-226ENST00000541589 CCER1Q8TC90 406 aaPredicted RBP12.15□□□□□ -0.46
LMO3-226ENST00000541589 RBM33Q96EV2 1170 aaKnown RBP12.15□□□□□ -0.46
LMO3-226ENST00000541589 TET3O43151 1660 aa12.15□□□□□ -0.46
LMO3-226ENST00000541589 SRCAPQ6ZRS2 3230 aa12.15□□□□□ -0.46
LMO3-226ENST00000541589 MAST1Q9Y2H9 1570 aa12.15□□□□□ -0.46
LMO3-226ENST00000541589 LRP6O75581 1613 aa12.15□□□□□ -0.46
LMO3-226ENST00000541589 SLAIN2Q9P270 581 aa12.14□□□□□ -0.47
LMO3-226ENST00000541589 ZNF772Q68DY9 489 aaPredicted RBP12.14□□□□□ -0.47
LMO3-226ENST00000541589 NKTRP30414 1462 aaKnown RBP12.13□□□□□ -0.47
LMO3-226ENST00000541589 NWD1Q149M9 1564 aa12.13□□□□□ -0.47
LMO3-226ENST00000541589 PHLPP1O60346 1717 aa12.13□□□□□ -0.47
LMO3-226ENST00000541589 CEP152O94986 1710 aa12.13□□□□□ -0.47
LMO3-226ENST00000541589 SPATA31A6Q5VVP1 1343 aa12.13□□□□□ -0.47
LMO3-226ENST00000541589 COL16A1Q07092 1604 aaPredicted RBP12.13□□□□□ -0.47
LMO3-226ENST00000541589 PIK3C2BO00750 1634 aa12.12□□□□□ -0.47
LMO3-226ENST00000541589 FGD6Q6ZV73 1430 aa12.12□□□□□ -0.47
LMO3-226ENST00000541589 MSH6P52701 1360 aa12.12□□□□□ -0.47
LMO3-226ENST00000541589 TRIM52Q96A61 297 aa12.12□□□□□ -0.47
LMO3-226ENST00000541589 SLC26A8Q96RN1 970 aa12.12□□□□□ -0.47
LMO3-226ENST00000541589 FARP1Q9Y4F1 1045 aaPredicted RBP12.12□□□□□ -0.47
LMO3-226ENST00000541589 CFAP65Q6ZU64 1925 aaKnown RBP12.11□□□□□ -0.47
LMO3-226ENST00000541589 MYOM3Q5VTT5 1437 aa12.11□□□□□ -0.47
LMO3-226ENST00000541589 CDK12Q9NYV4 1490 aaPredicted RBP12.1□□□□□ -0.47
LMO3-226ENST00000541589 KDM5AP29375 1690 aaKnown RBP12.1□□□□□ -0.47
LMO3-226ENST00000541589 EFCAB6Q5THR3 1501 aa12.1□□□□□ -0.47
LMO3-226ENST00000541589 RXRBP28702 533 aa12.08□□□□□ -0.47
LMO3-226ENST00000541589 IDI1Q13907 227 aa12.08□□□□□ -0.47
LMO3-226ENST00000541589 DUOX2Q9NRD8 1548 aa12.08□□□□□ -0.48
LMO3-226ENST00000541589 FAM50AQ14320 339 aaKnown RBP12.08□□□□□ -0.48
LMO3-226ENST00000541589 POTEIP0CG38 1075 aa12.07□□□□□ -0.48
LMO3-226ENST00000541589 MEX3CQ5U5Q3 659 aaKnown RBP12.07□□□□□ -0.48
LMO3-226ENST00000541589 AHDC1Q5TGY3 1603 aaPredicted RBP12.06□□□□□ -0.48
LMO3-226ENST00000541589 NCOA3Q9Y6Q9 1424 aa12.06□□□□□ -0.48
LMO3-226ENST00000541589 SHPRHQ149N8 1683 aa12.05□□□□□ -0.48
LMO3-226ENST00000541589 PTPN23Q9H3S7 1636 aa12.05□□□□□ -0.48
LMO3-226ENST00000541589 ITGAEP38570 1179 aa12.04□□□□□ -0.48
LMO3-226ENST00000541589 ERBINQ96RT1 1412 aa12.03□□□□□ -0.48
LMO3-226ENST00000541589 LMTK2Q8IWU2 1503 aa12.03□□□□□ -0.48
LMO3-226ENST00000541589 DIP2AQ14689 1571 aa12.03□□□□□ -0.48
LMO3-226ENST00000541589 NOS1P29475 1434 aa12.03□□□□□ -0.48
LMO3-226ENST00000541589 KIF15Q9NS87 1388 aa12.02□□□□□ -0.48
LMO3-226ENST00000541589 SETD5Q9C0A6 1442 aa12.02□□□□□ -0.49
LMO3-226ENST00000541589 ADGRB3O60242 1522 aa12.02□□□□□ -0.49
LMO3-226ENST00000541589 PLEKHG1Q9ULL1 1385 aa12.02□□□□□ -0.49
LMO3-226ENST00000541589 CHD2O14647 1828 aaKnown RBP12.01□□□□□ -0.49
LMO3-226ENST00000541589 RGS12O14924 1447 aa12.01□□□□□ -0.49
LMO3-226ENST00000541589 ZFYVE9O95405 1425 aa12.01□□□□□ -0.49
LMO3-226ENST00000541589 AFF2P51816 1311 aa12.01□□□□□ -0.49
LMO3-226ENST00000541589 MNX1P50219 401 aaPredicted RBP12.01□□□□□ -0.49
LMO3-226ENST00000541589 CLSPNQ9HAW4 1339 aa12□□□□□ -0.49
LMO3-226ENST00000541589 DHX57Q6P158 1386 aaKnown RBP12□□□□□ -0.49
LMO3-226ENST00000541589 RAB3GAP2Q9H2M9 1393 aa12□□□□□ -0.49
LMO3-226ENST00000541589 CADPS2Q86UW7 1296 aa12□□□□□ -0.49
LMO3-226ENST00000541589 KANK1Q14678 1352 aa11.99□□□□□ -0.49
LMO3-226ENST00000541589 C19orf44Q9H6X5 657 aa11.99□□□□□ -0.49
LMO3-226ENST00000541589 SLC52A1Q9NWF4 448 aa11.99□□□□□ -0.49
LMO3-226ENST00000541589 TBX22Q9Y458 520 aa11.99□□□□□ -0.49
Retrieved 100 of 20,778 RNA–protein pairs in 26 ms