RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 GOLGA3Q08378 1498 aa10.61□□□□□ -0.71
YBX3-208ENST00000540447 IBSPP21815 317 aaPredicted RBP10.61□□□□□ -0.71
YBX3-208ENST00000540447 CEP89Q96ST8 783 aa10.61□□□□□ -0.71
YBX3-208ENST00000540447 BRD2P25440 801 aaKnown RBP10.6□□□□□ -0.71
YBX3-208ENST00000540447 MPNDQ8N594 471 aa10.6□□□□□ -0.71
YBX3-208ENST00000540447 CLSTN1O94985 981 aa10.6□□□□□ -0.71
YBX3-208ENST00000540447 BICD2Q8TD16 824 aa10.6□□□□□ -0.71
YBX3-208ENST00000540447 C11orf95C9JLR9 678 aaPredicted RBP10.6□□□□□ -0.71
YBX3-208ENST00000540447 ERLIN1O75477 346 aa10.6□□□□□ -0.71
YBX3-208ENST00000540447 CTR9Q6PD62 1173 aa10.6□□□□□ -0.71
YBX3-208ENST00000540447 TNIKQ9UKE5 1360 aa10.6□□□□□ -0.71
YBX3-208ENST00000540447 NOL10Q9BSC4 688 aaKnown RBP10.6□□□□□ -0.71
YBX3-208ENST00000540447 TRIM34Q9BYJ4 488 aa10.6□□□□□ -0.71
YBX3-208ENST00000540447 FAM107BQ9H098 131 aa10.6□□□□□ -0.71
YBX3-208ENST00000540447 SMC4Q9NTJ3 1288 aa10.6□□□□□ -0.71
YBX3-208ENST00000540447 TMF1P82094 1093 aa10.59□□□□□ -0.71
YBX3-208ENST00000540447 CGNL1Q0VF96 1302 aa10.59□□□□□ -0.71
YBX3-208ENST00000540447 MNAT1P51948 309 aa10.59□□□□□ -0.71
YBX3-208ENST00000540447 HOMEZQ8IX15 550 aa10.59□□□□□ -0.71
YBX3-208ENST00000540447 PRPF40AO75400 957 aaKnown RBP10.59□□□□□ -0.71
YBX3-208ENST00000540447 DNAAF4Q8WXU2 420 aa10.59□□□□□ -0.71
YBX3-208ENST00000540447 TMCO3Q6UWJ1 677 aa10.59□□□□□ -0.71
YBX3-208ENST00000540447 CCDC94Q9BW85 323 aaPredicted RBP10.58□□□□□ -0.72
YBX3-208ENST00000540447 PHLDB1Q86UU1 1377 aa10.58□□□□□ -0.72
YBX3-208ENST00000540447 PPP1R15AO75807 674 aaPredicted RBP10.58□□□□□ -0.72
YBX3-208ENST00000540447 TSPY4P0CV99 314 aa10.58□□□□□ -0.72
YBX3-208ENST00000540447 TSPY10P0CW01 314 aa10.58□□□□□ -0.72
YBX3-208ENST00000540447 CCNB3Q8WWL7 1395 aa10.57□□□□□ -0.72
YBX3-208ENST00000540447 CAGE1Q8TC20 777 aa10.57□□□□□ -0.72
YBX3-208ENST00000540447 STAG3Q9UJ98 1225 aa10.57□□□□□ -0.72
YBX3-208ENST00000540447 PAIP2Q9BPZ3 127 aaKnown RBP10.57□□□□□ -0.72
YBX3-208ENST00000540447 CCDC9Q9Y3X0 531 aaKnown RBP10.57□□□□□ -0.72
YBX3-208ENST00000540447 POLR3GO15318 223 aaPredicted RBP10.56□□□□□ -0.72
YBX3-208ENST00000540447 KIF20AO95235 890 aa10.56□□□□□ -0.72
YBX3-208ENST00000540447 ANKRD45Q5TZF3 282 aa10.56□□□□□ -0.72
YBX3-208ENST00000540447 FAM184AQ8NB25 1140 aa10.56□□□□□ -0.72
YBX3-208ENST00000540447 CCDC102AQ96A19 550 aa10.56□□□□□ -0.72
YBX3-208ENST00000540447 FAM193AP78312 1265 aa10.56□□□□□ -0.72
YBX3-208ENST00000540447 TOMM22Q9NS69 142 aa10.56□□□□□ -0.72
YBX3-208ENST00000540447 NLRP13Q86W25 1043 aa10.56□□□□□ -0.72
YBX3-208ENST00000540447 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.56□□□□□ -0.72
YBX3-208ENST00000540447 SLTMQ9NWH9 1034 aaKnown RBP eCLIP10.56□□□□□ -0.72
YBX3-208ENST00000540447 SHTN1A0MZ66 631 aa10.56□□□□□ -0.72
YBX3-208ENST00000540447 SETD5Q9C0A6 1442 aa10.55□□□□□ -0.72
YBX3-208ENST00000540447 REC8O95072 547 aa10.55□□□□□ -0.72
YBX3-208ENST00000540447 NF2P35240 595 aa10.55□□□□□ -0.72
YBX3-208ENST00000540447 NEXNQ0ZGT2 675 aa10.55□□□□□ -0.72
YBX3-208ENST00000540447 SARNPP82979 210 aaKnown RBP10.55□□□□□ -0.72
YBX3-208ENST00000540447 TXLNBQ8N3L3 684 aa10.55□□□□□ -0.72
YBX3-208ENST00000540447 NAT10Q9H0A0 1025 aaKnown RBP10.55□□□□□ -0.72
YBX3-208ENST00000540447 CCDC91Q7Z6B0 441 aa10.55□□□□□ -0.72
YBX3-208ENST00000540447 FBXW7Q969H0 707 aa10.55□□□□□ -0.72
YBX3-208ENST00000540447 RASSF8Q8NHQ8 419 aa10.54□□□□□ -0.72
YBX3-208ENST00000540447 UBXN4Q92575 508 aa10.54□□□□□ -0.72
YBX3-208ENST00000540447 COG6Q9Y2V7 657 aa10.54□□□□□ -0.72
YBX3-208ENST00000540447 PRKRIP1Q9H875 184 aaPredicted RBP10.54□□□□□ -0.72
YBX3-208ENST00000540447 ZCCHC6Q5VYS8 1495 aaKnown RBP10.54□□□□□ -0.72
YBX3-208ENST00000540447 NCBP3Q53F19 620 aaKnown RBP10.54□□□□□ -0.72
YBX3-208ENST00000540447 PDILTQ8N807 584 aa10.54□□□□□ -0.72
YBX3-208ENST00000540447 ANKRD20A12PQ8NF67 263 aa10.54□□□□□ -0.72
YBX3-208ENST00000540447 RBM28Q9NW13 759 aaKnown RBP10.54□□□□□ -0.72
YBX3-208ENST00000540447 PRIMPOLQ96LW4 560 aa10.54□□□□□ -0.72
YBX3-208ENST00000540447 MCM5P33992 734 aa10.53□□□□□ -0.72
YBX3-208ENST00000540447 KRT222Q8N1A0 295 aa10.53□□□□□ -0.72
YBX3-208ENST00000540447 HMGB1P09429 215 aaKnown RBP10.53□□□□□ -0.72
YBX3-208ENST00000540447 LRRCC1Q9C099 1032 aa10.53□□□□□ -0.72
YBX3-208ENST00000540447 GOLGA6L10A6NI86 522 aa10.53□□□□□ -0.72
YBX3-208ENST00000540447 AAMPQ13685 434 aa10.52□□□□□ -0.72
YBX3-208ENST00000540447 SRPK2P78362 688 aaKnown RBP10.52□□□□□ -0.73
YBX3-208ENST00000540447 MORC1Q86VD1 984 aa10.52□□□□□ -0.73
YBX3-208ENST00000540447 VPS37CA5D8V6 355 aaPredicted RBP10.52□□□□□ -0.73
YBX3-208ENST00000540447 TTC31Q49AM3 519 aaPredicted RBP10.52□□□□□ -0.73
YBX3-208ENST00000540447 PCMTD1Q96MG8 357 aaPredicted RBP10.52□□□□□ -0.73
YBX3-208ENST00000540447 CCDC73Q6ZRK6 1079 aa10.52□□□□□ -0.73
YBX3-208ENST00000540447 GPATCH3Q96I76 525 aa10.52□□□□□ -0.73
YBX3-208ENST00000540447 SMC3Q9UQE7 1217 aa10.52□□□□□ -0.73
YBX3-208ENST00000540447 BANK1Q8NDB2 785 aa10.52□□□□□ -0.73
YBX3-208ENST00000540447 DHX8Q14562 1220 aaKnown RBP10.51□□□□□ -0.73
YBX3-208ENST00000540447 RASSF4Q9H2L5 321 aa10.51□□□□□ -0.73
YBX3-208ENST00000540447 SMC2O95347 1197 aa10.51□□□□□ -0.73
YBX3-208ENST00000540447 CCDC146Q8IYE0 955 aa10.51□□□□□ -0.73
YBX3-208ENST00000540447 STK31Q9BXU1 1019 aa10.51□□□□□ -0.73
YBX3-208ENST00000540447 RSF1Q96T23 1441 aaPredicted RBP10.5□□□□□ -0.73
YBX3-208ENST00000540447 MYBBP1AQ9BQG0 1328 aaKnown RBP10.5□□□□□ -0.73
YBX3-208ENST00000540447 BMS1Q14692 1282 aaKnown RBP10.5□□□□□ -0.73
YBX3-208ENST00000540447 FILIP1Q7Z7B0 1213 aa10.5□□□□□ -0.73
YBX3-208ENST00000540447 ZFP91Q96JP5 570 aaPredicted RBP10.5□□□□□ -0.73
YBX3-208ENST00000540447 RILPL2Q969X0 211 aa10.5□□□□□ -0.73
YBX3-208ENST00000540447 CPSF2Q9P2I0 782 aaKnown RBP10.5□□□□□ -0.73
YBX3-208ENST00000540447 TMCO5BA8MYB1 307 aa10.5□□□□□ -0.73
YBX3-208ENST00000540447 GBP2P32456 591 aaPredicted RBP10.5□□□□□ -0.73
YBX3-208ENST00000540447 LMAN1P49257 510 aa10.5□□□□□ -0.73
YBX3-208ENST00000540447 HOOK1Q9UJC3 728 aaKnown RBP10.5□□□□□ -0.73
YBX3-208ENST00000540447 CCDC192P0DO97 292 aa10.49□□□□□ -0.73
YBX3-208ENST00000540447 NAP1L1P55209 391 aaKnown RBP10.49□□□□□ -0.73
YBX3-208ENST00000540447 KIAA1328Q86T90 577 aa10.49□□□□□ -0.73
YBX3-208ENST00000540447 HDAC5Q9UQL6 1122 aa10.49□□□□□ -0.73
YBX3-208ENST00000540447 CHMP4CQ96CF2 233 aa10.49□□□□□ -0.73
YBX3-208ENST00000540447 MYO6Q9UM54 1294 aa10.49□□□□□ -0.73
YBX3-208ENST00000540447 MICALCLQ6ZW33 695 aa10.49□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 25.9 ms