RNA–Protein interactions for RNA: ENST00000540010.1

TRAF1-202, Transcript of TNF receptor associated factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRAF1, Length 4,303 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAF1-202ENST00000540010 BCORL1Q5H9F3 1711 aa13.16□□□□□ -0.3
TRAF1-202ENST00000540010 HSP90AA1P07900 732 aaKnown RBP13.16□□□□□ -0.3
TRAF1-202ENST00000540010 LAS1LQ9Y4W2 734 aaKnown RBP13.16□□□□□ -0.3
TRAF1-202ENST00000540010 PRDM15P57071 1507 aaPredicted RBP13.16□□□□□ -0.3
TRAF1-202ENST00000540010 UPF2Q9HAU5 1272 aaKnown RBP13.16□□□□□ -0.3
TRAF1-202ENST00000540010 NEFMP07197 916 aa13.15□□□□□ -0.3
TRAF1-202ENST00000540010 UGGT1Q9NYU2 1555 aa13.15□□□□□ -0.3
TRAF1-202ENST00000540010 DISP3Q9P2K9 1392 aa13.15□□□□□ -0.3
TRAF1-202ENST00000540010 TESK2Q96S53 571 aa13.15□□□□□ -0.3
TRAF1-202ENST00000540010 TRAK1Q9UPV9 953 aa13.15□□□□□ -0.3
TRAF1-202ENST00000540010 YEATS2Q9ULM3 1422 aa13.15□□□□□ -0.3
TRAF1-202ENST00000540010 SPHKAPQ2M3C7 1700 aa13.15□□□□□ -0.31
TRAF1-202ENST00000540010 CLTCL1P53675 1640 aa13.14□□□□□ -0.31
TRAF1-202ENST00000540010 TRPM1Q7Z4N2 1603 aa13.14□□□□□ -0.31
TRAF1-202ENST00000540010 DEPDC5O75140 1603 aa13.14□□□□□ -0.31
TRAF1-202ENST00000540010 MYBBP1AQ9BQG0 1328 aaKnown RBP13.14□□□□□ -0.31
TRAF1-202ENST00000540010 GOLGA6L2Q8N9W4 650 aaPredicted RBP13.14□□□□□ -0.31
TRAF1-202ENST00000540010 NPATQ14207 1427 aa13.13□□□□□ -0.31
TRAF1-202ENST00000540010 EFCAB6Q5THR3 1501 aa13.13□□□□□ -0.31
TRAF1-202ENST00000540010 VGFO15240 615 aaPredicted RBP13.13□□□□□ -0.31
TRAF1-202ENST00000540010 CFAP65Q6ZU64 1925 aaKnown RBP13.13□□□□□ -0.31
TRAF1-202ENST00000540010 NOS1P29475 1434 aa13.12□□□□□ -0.31
TRAF1-202ENST00000540010 SCAF11Q99590 1463 aaKnown RBP13.12□□□□□ -0.31
TRAF1-202ENST00000540010 TMEM132EQ6IEE7 984 aa13.12□□□□□ -0.31
TRAF1-202ENST00000540010 NLRP13Q86W25 1043 aa13.11□□□□□ -0.31
TRAF1-202ENST00000540010 NOP58Q9Y2X3 529 aaKnown RBP13.11□□□□□ -0.31
TRAF1-202ENST00000540010 VWDEQ8N2E2 1590 aa13.1□□□□□ -0.31
TRAF1-202ENST00000540010 TSPOAP1O95153 1857 aa13.1□□□□□ -0.31
TRAF1-202ENST00000540010 ABCA6Q8N139 1617 aa13.1□□□□□ -0.31
TRAF1-202ENST00000540010 IDI1Q13907 227 aa13.1□□□□□ -0.31
TRAF1-202ENST00000540010 SLC52A1Q9NWF4 448 aa13.1□□□□□ -0.31
TRAF1-202ENST00000540010 CEP152O94986 1710 aa13.1□□□□□ -0.31
TRAF1-202ENST00000540010 STK26Q9P289 416 aa13.09□□□□□ -0.31
TRAF1-202ENST00000540010 RPGRIP1LQ68CZ1 1315 aa13.09□□□□□ -0.31
TRAF1-202ENST00000540010 SAFB2Q14151 953 aaKnown RBP eCLIP13.09□□□□□ -0.31
TRAF1-202ENST00000540010 COL17A1Q9UMD9 1497 aaPredicted RBP13.09□□□□□ -0.31
TRAF1-202ENST00000540010 MROH1Q8NDA8 1641 aa13.09□□□□□ -0.31
TRAF1-202ENST00000540010 PLPPR3Q6T4P5 718 aa13.09□□□□□ -0.31
TRAF1-202ENST00000540010 PPRC1Q5VV67 1664 aaKnown RBP13.08□□□□□ -0.31
TRAF1-202ENST00000540010 POLR1AO95602 1720 aaPredicted RBP13.08□□□□□ -0.32
TRAF1-202ENST00000540010 FBXO31Q5XUX0 539 aaPredicted RBP13.08□□□□□ -0.32
TRAF1-202ENST00000540010 CENPJQ9HC77 1338 aaPredicted RBP13.08□□□□□ -0.32
TRAF1-202ENST00000540010 FRMPD1Q5SYB0 1578 aa13.08□□□□□ -0.32
TRAF1-202ENST00000540010 ABCC3O15438 1527 aa13.08□□□□□ -0.32
TRAF1-202ENST00000540010 TRHP20396 242 aaPredicted RBP13.07□□□□□ -0.32
TRAF1-202ENST00000540010 RNF17Q9BXT8 1623 aaKnown RBP13.07□□□□□ -0.32
TRAF1-202ENST00000540010 ZBED9Q6R2W3 1325 aa13.07□□□□□ -0.32
TRAF1-202ENST00000540010 LMTK2Q8IWU2 1503 aa13.07□□□□□ -0.32
TRAF1-202ENST00000540010 DIP2CQ9Y2E4 1556 aa13.07□□□□□ -0.32
TRAF1-202ENST00000540010 RGS3P49796 1198 aa13.06□□□□□ -0.32
TRAF1-202ENST00000540010 DEKP35659 375 aaKnown RBP13.06□□□□□ -0.32
TRAF1-202ENST00000540010 MAP3K4Q9Y6R4 1608 aa13.06□□□□□ -0.32
TRAF1-202ENST00000540010 BRD4O60885 1362 aaPredicted RBP13.06□□□□□ -0.32
TRAF1-202ENST00000540010 KIF1BO60333 1816 aa13.06□□□□□ -0.32
TRAF1-202ENST00000540010 MADDQ8WXG6 1647 aa13.06□□□□□ -0.32
TRAF1-202ENST00000540010 GLI2P10070 1586 aa13.06□□□□□ -0.32
TRAF1-202ENST00000540010 PNISRQ8TF01 805 aaKnown RBP13.05□□□□□ -0.32
TRAF1-202ENST00000540010 DIP2BQ9P265 1576 aa13.04□□□□□ -0.32
TRAF1-202ENST00000540010 C14orf93Q9H972 538 aaKnown RBP13.04□□□□□ -0.32
TRAF1-202ENST00000540010 POGKQ9P215 609 aa13.04□□□□□ -0.32
TRAF1-202ENST00000540010 NEUROD2Q15784 382 aa13.04□□□□□ -0.32
TRAF1-202ENST00000540010 PER1O15534 1290 aaPredicted RBP13.03□□□□□ -0.32
TRAF1-202ENST00000540010 MYOM2P54296 1465 aa13.03□□□□□ -0.32
TRAF1-202ENST00000540010 ANP32BQ92688 251 aaKnown RBP13.02□□□□□ -0.32
TRAF1-202ENST00000540010 LAMC1P11047 1609 aa13.02□□□□□ -0.33
TRAF1-202ENST00000540010 SRPK2P78362 688 aaKnown RBP13.01□□□□□ -0.33
TRAF1-202ENST00000540010 RICTORQ6R327 1708 aa13□□□□□ -0.33
TRAF1-202ENST00000540010 DDRGK1Q96HY6 314 aa13□□□□□ -0.33
TRAF1-202ENST00000540010 PPP6R1Q9UPN7 881 aa13□□□□□ -0.33
TRAF1-202ENST00000540010 TNNT2P45379 298 aaPredicted RBP12.99□□□□□ -0.33
TRAF1-202ENST00000540010 CAMSAP1Q5T5Y3 1602 aa12.99□□□□□ -0.33
TRAF1-202ENST00000540010 PARD3Q8TEW0 1356 aa12.99□□□□□ -0.33
TRAF1-202ENST00000540010 ADGRB3O60242 1522 aa12.99□□□□□ -0.33
TRAF1-202ENST00000540010 EVC2Q86UK5 1308 aa12.99□□□□□ -0.33
TRAF1-202ENST00000540010 ARHGAP31Q2M1Z3 1444 aa12.98□□□□□ -0.33
TRAF1-202ENST00000540010 PPM1GO15355 546 aaPredicted RBP12.97□□□□□ -0.33
TRAF1-202ENST00000540010 PPP2R1AP30153 589 aa12.97□□□□□ -0.33
TRAF1-202ENST00000540010 MORC1Q86VD1 984 aa12.97□□□□□ -0.33
TRAF1-202ENST00000540010 SLC12A5Q9H2X9 1139 aa12.97□□□□□ -0.33
TRAF1-202ENST00000540010 MINK1Q8N4C8 1332 aaPredicted RBP12.96□□□□□ -0.33
TRAF1-202ENST00000540010 NUDCQ9Y266 331 aa12.96□□□□□ -0.33
TRAF1-202ENST00000540010 PIK3C2GO75747 1445 aa12.96□□□□□ -0.33
TRAF1-202ENST00000540010 MROH2AA6NES4 1674 aa12.96□□□□□ -0.34
TRAF1-202ENST00000540010 HDGFP51858 240 aaKnown RBP12.95□□□□□ -0.34
TRAF1-202ENST00000540010 CABP2Q9NPB3 220 aa12.95□□□□□ -0.34
TRAF1-202ENST00000540010 NEURL4Q96JN8 1562 aa12.95□□□□□ -0.34
TRAF1-202ENST00000540010 FRAT1Q92837 279 aaPredicted RBP12.94□□□□□ -0.34
TRAF1-202ENST00000540010 AMER1Q5JTC6 1135 aaPredicted RBP12.94□□□□□ -0.34
TRAF1-202ENST00000540010 ZMYM4Q5VZL5 1548 aa12.94□□□□□ -0.34
TRAF1-202ENST00000540010 PRAM1Q96QH2 718 aa12.94□□□□□ -0.34
TRAF1-202ENST00000540010 IQGAP1P46940 1657 aa12.94□□□□□ -0.34
TRAF1-202ENST00000540010 BECN1Q14457 450 aa12.93□□□□□ -0.34
TRAF1-202ENST00000540010 SYNMO15061 1565 aa12.92□□□□□ -0.34
TRAF1-202ENST00000540010 ADAMTS8Q9UP79 889 aa12.92□□□□□ -0.34
TRAF1-202ENST00000540010 ERVK-7P63135 1459 aa12.91□□□□□ -0.34
TRAF1-202ENST00000540010 ZC3H13Q5T200 1668 aaKnown RBP12.91□□□□□ -0.34
TRAF1-202ENST00000540010 KIAA1210Q9ULL0 1709 aa12.91□□□□□ -0.34
TRAF1-202ENST00000540010 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.91□□□□□ -0.34
TRAF1-202ENST00000540010 ASXL1Q8IXJ9 1541 aa12.91□□□□□ -0.34
TRAF1-202ENST00000540010 NRXN1Q9ULB1 1477 aa12.9□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 19.5 ms