RNA–Protein interactions for RNA: ENST00000537981.5

RTN3-208, Transcript of reticulon 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene RTN3, Length 2,532 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTN3-208ENST00000537981 RPRD2Q5VT52 1461 aaKnown RBP13.58□□□□□ -0.23
RTN3-208ENST00000537981 KIF15Q9NS87 1388 aa13.58□□□□□ -0.23
RTN3-208ENST00000537981 DMTNQ08495 405 aa13.58□□□□□ -0.23
RTN3-208ENST00000537981 CANXP27824 592 aaKnown RBP13.58□□□□□ -0.24
RTN3-208ENST00000537981 PUS7Q96PZ0 661 aaKnown RBP13.58□□□□□ -0.24
RTN3-208ENST00000537981 CEP170Q5SW79 1584 aa13.58□□□□□ -0.24
RTN3-208ENST00000537981 TMEM51Q9NW97 253 aa13.57□□□□□ -0.24
RTN3-208ENST00000537981 ANKRD30BQ9BXX2 1392 aa13.57□□□□□ -0.24
RTN3-208ENST00000537981 CYB5RLQ6IPT4 315 aa13.57□□□□□ -0.24
RTN3-208ENST00000537981 ZNF830Q96NB3 372 aaPredicted RBP13.57□□□□□ -0.24
RTN3-208ENST00000537981 MIA2Q96PC5 1412 aa13.57□□□□□ -0.24
RTN3-208ENST00000537981 TSC1Q92574 1164 aa13.56□□□□□ -0.24
RTN3-208ENST00000537981 PPP4R3BQ5MIZ7 849 aa13.56□□□□□ -0.24
RTN3-208ENST00000537981 LRRIQ1Q96JM4 1722 aa13.56□□□□□ -0.24
RTN3-208ENST00000537981 TBC1D32Q96NH3 1257 aa13.55□□□□□ -0.24
RTN3-208ENST00000537981 KDM5CP41229 1560 aa13.55□□□□□ -0.24
RTN3-208ENST00000537981 MAPK8IP2Q13387 824 aaPredicted RBP13.55□□□□□ -0.24
RTN3-208ENST00000537981 ZSCAN30Q86W11 494 aa13.55□□□□□ -0.24
RTN3-208ENST00000537981 GCC2Q8IWJ2 1684 aa13.55□□□□□ -0.24
RTN3-208ENST00000537981 ZNF428Q96B54 188 aa13.54□□□□□ -0.24
RTN3-208ENST00000537981 EIF2AK3Q9NZJ5 1116 aaKnown RBP13.54□□□□□ -0.24
RTN3-208ENST00000537981 JPH4Q96JJ6 628 aa13.54□□□□□ -0.24
RTN3-208ENST00000537981 MTUS2Q5JR59 1369 aa13.54□□□□□ -0.24
RTN3-208ENST00000537981 NUP160Q12769 1436 aa13.54□□□□□ -0.24
RTN3-208ENST00000537981 BCAR3O75815 825 aa13.53□□□□□ -0.24
RTN3-208ENST00000537981 DUSP27Q5VZP5 1158 aa13.53□□□□□ -0.24
RTN3-208ENST00000537981 PLEKHH1Q9ULM0 1364 aa13.53□□□□□ -0.24
RTN3-208ENST00000537981 ZNF692Q9BU19 519 aaPredicted RBP13.53□□□□□ -0.24
RTN3-208ENST00000537981 CUL7Q14999 1698 aa13.53□□□□□ -0.24
RTN3-208ENST00000537981 FYCO1Q9BQS8 1478 aa13.52□□□□□ -0.24
RTN3-208ENST00000537981 ARHGEF11O15085 1522 aa13.52□□□□□ -0.24
RTN3-208ENST00000537981 CC2D1BQ5T0F9 858 aaKnown RBP13.52□□□□□ -0.25
RTN3-208ENST00000537981 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.52□□□□□ -0.25
RTN3-208ENST00000537981 NLRP13Q86W25 1043 aa13.52□□□□□ -0.25
RTN3-208ENST00000537981 PANK3Q9H999 370 aa13.52□□□□□ -0.25
RTN3-208ENST00000537981 CLASP1Q7Z460 1538 aa13.51□□□□□ -0.25
RTN3-208ENST00000537981 CBX1P83916 185 aa13.51□□□□□ -0.25
RTN3-208ENST00000537981 RALBP1Q15311 655 aa13.51□□□□□ -0.25
RTN3-208ENST00000537981 CHMP5Q9NZZ3 219 aa13.51□□□□□ -0.25
RTN3-208ENST00000537981 FAM177BA6PVY3 158 aa13.5□□□□□ -0.25
RTN3-208ENST00000537981 MSNP26038 577 aaKnown RBP13.5□□□□□ -0.25
RTN3-208ENST00000537981 ERCC6L2Q5T890 1561 aa13.5□□□□□ -0.25
RTN3-208ENST00000537981 ST20-MTHFSA0A0A6YYL1 179 aa13.5□□□□□ -0.25
RTN3-208ENST00000537981 ANP32BQ92688 251 aaKnown RBP13.5□□□□□ -0.25
RTN3-208ENST00000537981 SPINK5Q9NQ38 1064 aaPredicted RBP13.5□□□□□ -0.25
RTN3-208ENST00000537981 BLMP54132 1417 aaPredicted RBP13.5□□□□□ -0.25
RTN3-208ENST00000537981 CASKIN1Q8WXD9 1431 aa13.5□□□□□ -0.25
RTN3-208ENST00000537981 ZMYM4Q5VZL5 1548 aa13.49□□□□□ -0.25
RTN3-208ENST00000537981 UTP14CQ5TAP6 766 aaKnown RBP13.49□□□□□ -0.25
RTN3-208ENST00000537981 MAP7D2Q96T17 732 aa13.49□□□□□ -0.25
RTN3-208ENST00000537981 NASPP49321 788 aaPredicted RBP13.49□□□□□ -0.25
RTN3-208ENST00000537981 PPP1R9BQ96SB3 815 aa13.49□□□□□ -0.25
RTN3-208ENST00000537981 RIMBP3CA6NJZ7 1639 aa13.49□□□□□ -0.25
RTN3-208ENST00000537981 RIMBP3BA6NNM3 1639 aa13.49□□□□□ -0.25
RTN3-208ENST00000537981 RIMBP3Q9UFD9 1639 aa13.49□□□□□ -0.25
RTN3-208ENST00000537981 E9PCH4 1651 aa13.48□□□□□ -0.25
RTN3-208ENST00000537981 IFNLR1Q8IU57 520 aaPredicted RBP13.48□□□□□ -0.25
RTN3-208ENST00000537981 TNPO1Q92973 898 aaKnown RBP13.48□□□□□ -0.25
RTN3-208ENST00000537981 RTEL1-TNFRSF6BF6WH68 1400 aa13.48□□□□□ -0.25
RTN3-208ENST00000537981 ADAMTS8Q9UP79 889 aa13.48□□□□□ -0.25
RTN3-208ENST00000537981 PARD3Q8TEW0 1356 aa13.48□□□□□ -0.25
RTN3-208ENST00000537981 AK9Q5TCS8 1911 aa13.47□□□□□ -0.25
RTN3-208ENST00000537981 PRG4Q92954 1404 aaPredicted RBP13.47□□□□□ -0.25
RTN3-208ENST00000537981 CCDC173Q0VFZ6 552 aa13.47□□□□□ -0.25
RTN3-208ENST00000537981 IPO4Q8TEX9 1081 aaKnown RBP13.47□□□□□ -0.25
RTN3-208ENST00000537981 CCDC94Q9BW85 323 aaPredicted RBP13.47□□□□□ -0.25
RTN3-208ENST00000537981 ATP2B3Q16720 1220 aa13.46□□□□□ -0.25
RTN3-208ENST00000537981 PANK1Q8TE04 598 aa13.46□□□□□ -0.26
RTN3-208ENST00000537981 MBD5Q9P267 1494 aa13.46□□□□□ -0.26
RTN3-208ENST00000537981 DDX11L8A8MPP1 907 aa13.45□□□□□ -0.26
RTN3-208ENST00000537981 KIAA0586Q9BVV6 1533 aa13.45□□□□□ -0.26
RTN3-208ENST00000537981 TERF1P54274 439 aa13.45□□□□□ -0.26
RTN3-208ENST00000537981 ZNF710Q8N1W2 664 aa13.45□□□□□ -0.26
RTN3-208ENST00000537981 MFAP1P55081 439 aaKnown RBP13.44□□□□□ -0.26
RTN3-208ENST00000537981 RSPH4AQ5TD94 716 aa13.44□□□□□ -0.26
RTN3-208ENST00000537981 COG6Q9Y2V7 657 aa13.44□□□□□ -0.26
RTN3-208ENST00000537981 CARD11Q9BXL7 1154 aa13.44□□□□□ -0.26
RTN3-208ENST00000537981 ROCK2O75116 1388 aaKnown RBP13.43□□□□□ -0.26
RTN3-208ENST00000537981 ARID3CA6NKF2 412 aa13.43□□□□□ -0.26
RTN3-208ENST00000537981 TNNQ9UQP3 1299 aa13.43□□□□□ -0.26
RTN3-208ENST00000537981 EIF3AQ14152 1382 aaKnown RBP13.43□□□□□ -0.26
RTN3-208ENST00000537981 DYNC1I1O14576 645 aa13.43□□□□□ -0.26
RTN3-208ENST00000537981 DDIT3P35638 169 aa13.42□□□□□ -0.26
RTN3-208ENST00000537981 UPF2Q9HAU5 1272 aaKnown RBP13.42□□□□□ -0.26
RTN3-208ENST00000537981 DMRT2Q9Y5R5 561 aa13.42□□□□□ -0.26
RTN3-208ENST00000537981 KIF14Q15058 1648 aa13.42□□□□□ -0.26
RTN3-208ENST00000537981 MAGI3Q5TCQ9 1506 aa13.42□□□□□ -0.26
RTN3-208ENST00000537981 SPDYE4A6NLX3 237 aa13.42□□□□□ -0.26
RTN3-208ENST00000537981 PER1O15534 1290 aaPredicted RBP13.41□□□□□ -0.26
RTN3-208ENST00000537981 ISY1Q9ULR0 285 aaKnown RBP13.41□□□□□ -0.26
RTN3-208ENST00000537981 ZNF500O60304 480 aaPredicted RBP13.4□□□□□ -0.26
RTN3-208ENST00000537981 DHX30Q7L2E3 1194 aaKnown RBP eCLIP13.4□□□□□ -0.26
RTN3-208ENST00000537981 C22orf23Q9BZE7 217 aa13.4□□□□□ -0.26
RTN3-208ENST00000537981 NOL7Q9UMY1 257 aaKnown RBP13.4□□□□□ -0.26
RTN3-208ENST00000537981 MAPK8IP3Q9UPT6 1336 aa13.4□□□□□ -0.26
RTN3-208ENST00000537981 CCDC146Q8IYE0 955 aa13.4□□□□□ -0.26
RTN3-208ENST00000537981 CGNQ9P2M7 1197 aaKnown RBP13.4□□□□□ -0.26
RTN3-208ENST00000537981 EFCAB5A4FU69 1503 aa13.4□□□□□ -0.27
RTN3-208ENST00000537981 MPNDQ8N594 471 aa13.39□□□□□ -0.27
RTN3-208ENST00000537981 KCTD17Q8N5Z5 321 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 92 ms