RNA–Protein interactions for RNA: ENST00000534172.1

CSMD3-210, Transcript of CUB and Sushi multiple domains 3, humanhuman

TSL 5

Gene CSMD3, Length 2,486 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSMD3-210ENST00000534172 POTEBQ6S5H4 581 aa6.99□□□□□ -1.29
CSMD3-210ENST00000534172 PHOX2BQ99453 314 aa6.99□□□□□ -1.29
CSMD3-210ENST00000534172 GOLGA8CPA6NN73 597 aa6.99□□□□□ -1.29
CSMD3-210ENST00000534172 BHMG1C9JSJ3 638 aaPredicted RBP6.99□□□□□ -1.29
CSMD3-210ENST00000534172 ERICH6Q7L0X2 663 aa6.99□□□□□ -1.29
CSMD3-210ENST00000534172 PCDH10Q9P2E7 1040 aa6.98□□□□□ -1.29
CSMD3-210ENST00000534172 TIMELESSQ9UNS1 1208 aa6.96□□□□□ -1.29
CSMD3-210ENST00000534172 ANKRD13DQ6ZTN6 518 aa6.96□□□□□ -1.3
CSMD3-210ENST00000534172 IL27Q8NEV9 243 aa6.96□□□□□ -1.3
CSMD3-210ENST00000534172 PRR14Q9BWN1 585 aa6.95□□□□□ -1.3
CSMD3-210ENST00000534172 HRO43593 1189 aa6.95□□□□□ -1.3
CSMD3-210ENST00000534172 MS4A1P11836 297 aa6.95□□□□□ -1.3
CSMD3-210ENST00000534172 USP46P62068 366 aa6.95□□□□□ -1.3
CSMD3-210ENST00000534172 ANKK1Q8NFD2 765 aa6.95□□□□□ -1.3
CSMD3-210ENST00000534172 SMAPO00193 183 aa6.94□□□□□ -1.3
CSMD3-210ENST00000534172 CD46P15529 392 aa6.94□□□□□ -1.3
CSMD3-210ENST00000534172 BEGAINQ9BUH8 593 aa6.94□□□□□ -1.3
CSMD3-210ENST00000534172 REPIN1Q9BWE0 567 aaKnown RBP6.94□□□□□ -1.3
CSMD3-210ENST00000534172 FAM117AQ9C073 453 aa6.94□□□□□ -1.3
CSMD3-210ENST00000534172 SWT1Q5T5J6 900 aaKnown RBP6.94□□□□□ -1.3
CSMD3-210ENST00000534172 LRCH3Q96II8 777 aa6.94□□□□□ -1.3
CSMD3-210ENST00000534172 SEPT9Q9UHD8 586 aaPredicted RBP6.94□□□□□ -1.3
CSMD3-210ENST00000534172 DDX11L8A8MPP1 907 aa6.93□□□□□ -1.3
CSMD3-210ENST00000534172 SH3D19Q5HYK7 790 aa6.93□□□□□ -1.3
CSMD3-210ENST00000534172 NUTM1Q86Y26 1132 aa6.93□□□□□ -1.3
CSMD3-210ENST00000534172 RDH13Q8NBN7 331 aa6.93□□□□□ -1.3
CSMD3-210ENST00000534172 ZFRQ96KR1 1074 aaKnown RBP6.93□□□□□ -1.3
CSMD3-210ENST00000534172 PCMTD1Q96MG8 357 aaPredicted RBP6.93□□□□□ -1.3
CSMD3-210ENST00000534172 GRIPAP1Q4V328 841 aa6.93□□□□□ -1.3
CSMD3-210ENST00000534172 POTEGQ6S5H5 508 aa6.93□□□□□ -1.3
CSMD3-210ENST00000534172 C3orf80F5H4A9 247 aa6.92□□□□□ -1.3
CSMD3-210ENST00000534172 GJA5P36382 358 aa6.92□□□□□ -1.3
CSMD3-210ENST00000534172 KMT5BQ4FZB7 885 aa6.92□□□□□ -1.3
CSMD3-210ENST00000534172 CDKN2AIPQ9NXV6 580 aaPredicted RBP6.92□□□□□ -1.3
CSMD3-210ENST00000534172 SKIV2LQ15477 1246 aaKnown RBP6.92□□□□□ -1.3
CSMD3-210ENST00000534172 PLEKHG3A1L390 1219 aa6.91□□□□□ -1.3
CSMD3-210ENST00000534172 POTEMA6NI47 508 aa6.91□□□□□ -1.3
CSMD3-210ENST00000534172 TUSC1Q2TAM9 212 aa6.91□□□□□ -1.3
CSMD3-210ENST00000534172 SAMD7Q7Z3H4 446 aa6.91□□□□□ -1.3
CSMD3-210ENST00000534172 CDAN1Q8IWY9 1227 aa6.91□□□□□ -1.3
CSMD3-210ENST00000534172 GTF3C3Q9Y5Q9 886 aa6.91□□□□□ -1.3
CSMD3-210ENST00000534172 GCGRP47871 477 aa6.9□□□□□ -1.3
CSMD3-210ENST00000534172 NLRP7Q8WX94 980 aa6.9□□□□□ -1.31
CSMD3-210ENST00000534172 SOWAHBA6NEL2 793 aa6.89□□□□□ -1.31
CSMD3-210ENST00000534172 NYAP1Q6ZVC0 841 aa6.89□□□□□ -1.31
CSMD3-210ENST00000534172 WNT2BQ93097 391 aa6.89□□□□□ -1.31
CSMD3-210ENST00000534172 KRTAP3-3Q9BYR6 98 aa6.89□□□□□ -1.31
CSMD3-210ENST00000534172 KRTAP3-2Q9BYR7 98 aa6.89□□□□□ -1.31
CSMD3-210ENST00000534172 TBC1D2Q9BYX2 928 aa6.89□□□□□ -1.31
CSMD3-210ENST00000534172 KDM4AO75164 1064 aa6.88□□□□□ -1.31
CSMD3-210ENST00000534172 PPP4CP60510 307 aa6.88□□□□□ -1.31
CSMD3-210ENST00000534172 TSR3Q9UJK0 312 aaKnown RBP6.88□□□□□ -1.31
CSMD3-210ENST00000534172 SPIRE2Q8WWL2 714 aa6.87□□□□□ -1.31
CSMD3-210ENST00000534172 SPTLC1O15269 473 aa6.86□□□□□ -1.31
CSMD3-210ENST00000534172 RNF40O75150 1001 aa6.86□□□□□ -1.31
CSMD3-210ENST00000534172 CFHP08603 1231 aa6.86□□□□□ -1.31
CSMD3-210ENST00000534172 CLK2P49760 499 aaKnown RBP6.86□□□□□ -1.31
CSMD3-210ENST00000534172 MYSM1Q5VVJ2 828 aa6.86□□□□□ -1.31
CSMD3-210ENST00000534172 RIC3Q7Z5B4 369 aa6.86□□□□□ -1.31
CSMD3-210ENST00000534172 ATP1B4Q9UN42 357 aaPredicted RBP6.85□□□□□ -1.31
CSMD3-210ENST00000534172 ACTN4O43707 911 aaKnown RBP6.85□□□□□ -1.31
CSMD3-210ENST00000534172 SLC10A3P09131 477 aa6.85□□□□□ -1.31
CSMD3-210ENST00000534172 ATP6V1AP38606 617 aa6.84□□□□□ -1.31
CSMD3-210ENST00000534172 PRPF38BQ5VTL8 546 aaKnown RBP6.84□□□□□ -1.31
CSMD3-210ENST00000534172 HPS5Q9UPZ3 1129 aa6.84□□□□□ -1.31
CSMD3-210ENST00000534172 Q3C1V9 767 aa6.83□□□□□ -1.32
CSMD3-210ENST00000534172 RSBN1LQ6PCB5 846 aaPredicted RBP6.83□□□□□ -1.32
CSMD3-210ENST00000534172 SPDYE5A6NIY4 337 aa6.82□□□□□ -1.32
CSMD3-210ENST00000534172 HOXA2O43364 376 aa6.82□□□□□ -1.32
CSMD3-210ENST00000534172 THSD4Q6ZMP0 1018 aa6.82□□□□□ -1.32
CSMD3-210ENST00000534172 FLIIQ13045 1269 aa6.82□□□□□ -1.32
CSMD3-210ENST00000534172 TMEM259Q4ZIN3 620 aa6.81□□□□□ -1.32
CSMD3-210ENST00000534172 NR1I2O75469 434 aa6.81□□□□□ -1.32
CSMD3-210ENST00000534172 FDX1P10109 184 aa6.81□□□□□ -1.32
CSMD3-210ENST00000534172 POLR3EQ9NVU0 708 aa6.81□□□□□ -1.32
CSMD3-210ENST00000534172 MYT1LQ9UL68 1186 aa6.81□□□□□ -1.32
CSMD3-210ENST00000534172 BCAMP50895 628 aa6.8□□□□□ -1.32
CSMD3-210ENST00000534172 PPP2R2DQ66LE6 453 aa6.8□□□□□ -1.32
CSMD3-210ENST00000534172 ZBTB3Q9H5J0 574 aa6.8□□□□□ -1.32
CSMD3-210ENST00000534172 BANK1Q8NDB2 785 aa6.79□□□□□ -1.32
CSMD3-210ENST00000534172 KCTD12Q96CX2 325 aaKnown RBP6.79□□□□□ -1.32
CSMD3-210ENST00000534172 GNL3Q9BVP2 549 aaKnown RBP eCLIP6.79□□□□□ -1.32
CSMD3-210ENST00000534172 SALL2Q9Y467 1007 aaPredicted RBP6.79□□□□□ -1.32
CSMD3-210ENST00000534172 MOXD2PA6NHM9 499 aa6.79□□□□□ -1.32
CSMD3-210ENST00000534172 APBB1O00213 710 aa6.78□□□□□ -1.32
CSMD3-210ENST00000534172 FUT2Q10981 343 aa6.78□□□□□ -1.32
CSMD3-210ENST00000534172 PCDHB3Q9Y5E6 796 aa6.78□□□□□ -1.32
CSMD3-210ENST00000534172 MORN1Q5T089 497 aa6.77□□□□□ -1.32
CSMD3-210ENST00000534172 NUTM2BA6NNL0 878 aaPredicted RBP6.77□□□□□ -1.33
CSMD3-210ENST00000534172 NUTM2EB1AL46 878 aaPredicted RBP6.77□□□□□ -1.33
CSMD3-210ENST00000534172 LILRB3O75022 631 aa6.77□□□□□ -1.33
CSMD3-210ENST00000534172 NUTM2DQ5VT03 806 aaPredicted RBP6.77□□□□□ -1.33
CSMD3-210ENST00000534172 NUTM2AQ8IVF1 878 aaPredicted RBP6.77□□□□□ -1.33
CSMD3-210ENST00000534172 ARXQ96QS3 562 aa6.77□□□□□ -1.33
CSMD3-210ENST00000534172 LIMD1Q9UGP4 676 aa6.77□□□□□ -1.33
CSMD3-210ENST00000534172 SOCS7O14512 581 aa6.76□□□□□ -1.33
CSMD3-210ENST00000534172 NDUFV2P19404 249 aa6.76□□□□□ -1.33
CSMD3-210ENST00000534172 MTMR2Q13614 643 aa6.76□□□□□ -1.33
CSMD3-210ENST00000534172 PROCA1Q8NCQ7 364 aaPredicted RBP6.76□□□□□ -1.33
CSMD3-210ENST00000534172 HCSTQ9UBK5 93 aa6.76□□□□□ -1.33
Retrieved 100 of 20,778 RNA–protein pairs in 20.3 ms