RNA–Protein interactions for RNA: ENST00000532088.1

COPB1-208, Transcript of coatomer protein complex subunit beta 1, humanhuman

TSL 3

Gene COPB1, Length 510 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-208ENST00000532088 KDM4FA0A1W2PPD8 638 aa18.37■□□□□ 0.53
COPB1-208ENST00000532088 ERVK-7P63135 1459 aa18.37■□□□□ 0.53
COPB1-208ENST00000532088 PREX1Q8TCU6 1659 aa18.36■□□□□ 0.53
COPB1-208ENST00000532088 SPHKAPQ2M3C7 1700 aa18.35■□□□□ 0.53
COPB1-208ENST00000532088 TRPM2O94759 1503 aa18.34■□□□□ 0.53
COPB1-208ENST00000532088 CLSPNQ9HAW4 1339 aa18.34■□□□□ 0.53
COPB1-208ENST00000532088 ANKRD30BQ9BXX2 1392 aa18.33■□□□□ 0.53
COPB1-208ENST00000532088 VASPP50552 380 aaPredicted RBP18.32■□□□□ 0.52
COPB1-208ENST00000532088 PLA2R1Q13018 1463 aa18.32■□□□□ 0.52
COPB1-208ENST00000532088 SYNMO15061 1565 aa18.3■□□□□ 0.52
COPB1-208ENST00000532088 TNRQ92752 1358 aa18.3■□□□□ 0.52
COPB1-208ENST00000532088 NLRP1Q9C000 1473 aa18.29■□□□□ 0.52
COPB1-208ENST00000532088 SLC52A1Q9NWF4 448 aa18.29■□□□□ 0.52
COPB1-208ENST00000532088 PIK3C2BO00750 1634 aa18.29■□□□□ 0.52
COPB1-208ENST00000532088 PITPNM1O00562 1244 aa18.28■□□□□ 0.52
COPB1-208ENST00000532088 FBXO31Q5XUX0 539 aaPredicted RBP18.28■□□□□ 0.52
COPB1-208ENST00000532088 CEBPAP49715 358 aaPredicted RBP18.27■□□□□ 0.52
COPB1-208ENST00000532088 CLEC11AQ9Y240 323 aa18.27■□□□□ 0.52
COPB1-208ENST00000532088 SETD1BQ9UPS6 1966 aaKnown RBP18.27■□□□□ 0.52
COPB1-208ENST00000532088 NEURL4Q96JN8 1562 aa18.26■□□□□ 0.51
COPB1-208ENST00000532088 CCDC144AA2RUR9 1427 aa18.26■□□□□ 0.51
COPB1-208ENST00000532088 KDM5AP29375 1690 aaKnown RBP18.25■□□□□ 0.51
COPB1-208ENST00000532088 CFAP65Q6ZU64 1925 aaKnown RBP18.24■□□□□ 0.51
COPB1-208ENST00000532088 CLTCL1P53675 1640 aa18.23■□□□□ 0.51
COPB1-208ENST00000532088 CCER1Q8TC90 406 aaPredicted RBP18.23■□□□□ 0.51
COPB1-208ENST00000532088 MYO3AQ8NEV4 1616 aa18.23■□□□□ 0.51
COPB1-208ENST00000532088 ZNF142P52746 1687 aaPredicted RBP18.21■□□□□ 0.51
COPB1-208ENST00000532088 A2ML1A8K2U0 1454 aa18.2■□□□□ 0.5
COPB1-208ENST00000532088 IDI1Q13907 227 aa18.2■□□□□ 0.5
COPB1-208ENST00000532088 ADGRB3O60242 1522 aa18.19■□□□□ 0.5
COPB1-208ENST00000532088 UHRF1BP1Q6BDS2 1440 aa18.19■□□□□ 0.5
COPB1-208ENST00000532088 UGGT1Q9NYU2 1555 aa18.19■□□□□ 0.5
COPB1-208ENST00000532088 CEP170BQ9Y4F5 1589 aaPredicted RBP18.18■□□□□ 0.5
COPB1-208ENST00000532088 KIF1BO60333 1816 aa18.18■□□□□ 0.5
COPB1-208ENST00000532088 SPATA31E1Q6ZUB1 1445 aa18.17■□□□□ 0.5
COPB1-208ENST00000532088 TMEM131LA2VDJ0 1609 aa18.17■□□□□ 0.5
COPB1-208ENST00000532088 PRR29P0C7W0 189 aa18.16■□□□□ 0.5
COPB1-208ENST00000532088 UBR1Q8IWV7 1749 aa18.15■□□□□ 0.5
COPB1-208ENST00000532088 TIMELESSQ9UNS1 1208 aa18.13■□□□□ 0.49
COPB1-208ENST00000532088 THEMISQ8N1K5 641 aaPredicted RBP18.12■□□□□ 0.49
COPB1-208ENST00000532088 STAC3Q96MF2 364 aa18.12■□□□□ 0.49
COPB1-208ENST00000532088 SIN3AQ96ST3 1273 aa18.12■□□□□ 0.49
COPB1-208ENST00000532088 RPGRIP1LQ68CZ1 1315 aa18.12■□□□□ 0.49
COPB1-208ENST00000532088 MIER1Q8N108 512 aa18.11■□□□□ 0.49
COPB1-208ENST00000532088 SLIT1O75093 1534 aa18.11■□□□□ 0.49
COPB1-208ENST00000532088 IFNLR1Q8IU57 520 aaPredicted RBP18.1■□□□□ 0.49
COPB1-208ENST00000532088 LMTK3Q96Q04 1460 aa18.09■□□□□ 0.49
COPB1-208ENST00000532088 ARHGAP23Q9P227 1491 aa18.09■□□□□ 0.49
COPB1-208ENST00000532088 PLCD3Q8N3E9 789 aa18.09■□□□□ 0.49
COPB1-208ENST00000532088 TMEM2Q9UHN6 1383 aa18.08■□□□□ 0.49
COPB1-208ENST00000532088 CHGAP10645 457 aaKnown RBP18.07■□□□□ 0.48
COPB1-208ENST00000532088 HDGFP51858 240 aaKnown RBP18.07■□□□□ 0.48
COPB1-208ENST00000532088 MYO5BQ9ULV0 1848 aa18.07■□□□□ 0.48
COPB1-208ENST00000532088 ZFYVE9O95405 1425 aa18.06■□□□□ 0.48
COPB1-208ENST00000532088 NEUROD1Q13562 356 aa18.06■□□□□ 0.48
COPB1-208ENST00000532088 NEXMIFQ5QGS0 1516 aa18.06■□□□□ 0.48
COPB1-208ENST00000532088 IFT172Q9UG01 1749 aa18.06■□□□□ 0.48
COPB1-208ENST00000532088 TONSLQ96HA7 1378 aa18.05■□□□□ 0.48
COPB1-208ENST00000532088 ABCF1Q8NE71 845 aaKnown RBP eCLIP18.05■□□□□ 0.48
COPB1-208ENST00000532088 MYOM2P54296 1465 aa18.05■□□□□ 0.48
COPB1-208ENST00000532088 ZNF326Q5BKZ1 582 aaKnown RBP18.04■□□□□ 0.48
COPB1-208ENST00000532088 RIMS2Q9UQ26 1411 aa18.04■□□□□ 0.48
COPB1-208ENST00000532088 PPLO60437 1756 aa18.04■□□□□ 0.48
COPB1-208ENST00000532088 RGL3Q3MIN7 710 aa18.02■□□□□ 0.48
COPB1-208ENST00000532088 CHRDL2Q6WN34 429 aa18.02■□□□□ 0.48
COPB1-208ENST00000532088 VGFO15240 615 aaPredicted RBP18.01■□□□□ 0.47
COPB1-208ENST00000532088 L3MBTL2Q969R5 705 aa18.01■□□□□ 0.47
COPB1-208ENST00000532088 NRXN1Q9ULB1 1477 aa18.01■□□□□ 0.47
COPB1-208ENST00000532088 PLEKHG5O94827 1062 aa18■□□□□ 0.47
COPB1-208ENST00000532088 CREBZFQ9NS37 354 aa18■□□□□ 0.47
COPB1-208ENST00000532088 EID1Q9Y6B2 187 aa18■□□□□ 0.47
COPB1-208ENST00000532088 SCAF11Q99590 1463 aaKnown RBP18■□□□□ 0.47
COPB1-208ENST00000532088 ANKLE2Q86XL3 938 aa17.98■□□□□ 0.47
COPB1-208ENST00000532088 DCAF11Q8TEB1 546 aa17.98■□□□□ 0.47
COPB1-208ENST00000532088 MED14O60244 1454 aa17.98■□□□□ 0.47
COPB1-208ENST00000532088 PLEKHG1Q9ULL1 1385 aa17.97■□□□□ 0.47
COPB1-208ENST00000532088 TXNDC2Q86VQ3 553 aa17.97■□□□□ 0.47
COPB1-208ENST00000532088 POLR1AO95602 1720 aaPredicted RBP17.96■□□□□ 0.47
COPB1-208ENST00000532088 SETBP1Q9Y6X0 1596 aa17.96■□□□□ 0.46
COPB1-208ENST00000532088 LTKP29376 864 aa17.95■□□□□ 0.46
COPB1-208ENST00000532088 ZEB1P37275 1124 aaPredicted RBP17.95■□□□□ 0.46
COPB1-208ENST00000532088 PIK3C2GO75747 1445 aa17.95■□□□□ 0.46
COPB1-208ENST00000532088 PPP1R15AO75807 674 aaPredicted RBP17.94■□□□□ 0.46
COPB1-208ENST00000532088 FXR2P51116 673 aaKnown RBP eCLIP17.94■□□□□ 0.46
COPB1-208ENST00000532088 PRAG1Q86YV5 1406 aa17.94■□□□□ 0.46
COPB1-208ENST00000532088 KLHL34Q8N239 644 aa17.93■□□□□ 0.46
COPB1-208ENST00000532088 ADGRF5Q8IZF2 1346 aa17.93■□□□□ 0.46
COPB1-208ENST00000532088 DIP2AQ14689 1571 aa17.92■□□□□ 0.46
COPB1-208ENST00000532088 LAMC1P11047 1609 aa17.92■□□□□ 0.46
COPB1-208ENST00000532088 ZBTB47Q9UFB7 747 aaPredicted RBP17.92■□□□□ 0.46
COPB1-208ENST00000532088 HSPA2P54652 639 aa17.91■□□□□ 0.46
COPB1-208ENST00000532088 POTEHQ6S545 545 aa17.91■□□□□ 0.46
COPB1-208ENST00000532088 KIAA1210Q9ULL0 1709 aa17.91■□□□□ 0.46
COPB1-208ENST00000532088 NPHP4O75161 1426 aaPredicted RBP17.9■□□□□ 0.46
COPB1-208ENST00000532088 KDM2AQ9Y2K7 1162 aa17.9■□□□□ 0.46
COPB1-208ENST00000532088 NRXN3Q9Y4C0 1643 aa17.9■□□□□ 0.46
COPB1-208ENST00000532088 IQGAP1P46940 1657 aa17.9■□□□□ 0.46
COPB1-208ENST00000532088 STRCQ7RTU9 1775 aa17.89■□□□□ 0.45
COPB1-208ENST00000532088 C14orf93Q9H972 538 aaKnown RBP17.88■□□□□ 0.45
COPB1-208ENST00000532088 NCKAP5LQ9HCH0 1330 aa17.88■□□□□ 0.45
Retrieved 100 of 20,778 RNA–protein pairs in 82.6 ms