RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 TSPY10P0CW01 314 aa11.13□□□□□ -0.63
CD44-228ENST00000528455 C7P10643 843 aa11.13□□□□□ -0.63
CD44-228ENST00000528455 DPY19L2Q6NUT2 758 aa11.13□□□□□ -0.63
CD44-228ENST00000528455 MAGI2Q86UL8 1455 aa11.12□□□□□ -0.63
CD44-228ENST00000528455 PCGF6Q9BYE7 350 aa11.12□□□□□ -0.63
CD44-228ENST00000528455 COLQQ9Y215 455 aaPredicted RBP11.12□□□□□ -0.63
CD44-228ENST00000528455 POGZQ7Z3K3 1410 aa11.11□□□□□ -0.63
CD44-228ENST00000528455 POTEFA5A3E0 1075 aa11.11□□□□□ -0.63
CD44-228ENST00000528455 METRNQ9UJH8 293 aa11.11□□□□□ -0.63
CD44-228ENST00000528455 ZMYM4Q5VZL5 1548 aa11.1□□□□□ -0.63
CD44-228ENST00000528455 ZFYVE16Q7Z3T8 1539 aa11.1□□□□□ -0.63
CD44-228ENST00000528455 ARHGEF40Q8TER5 1519 aa11.1□□□□□ -0.63
CD44-228ENST00000528455 CAMSAP2Q08AD1 1489 aa11.1□□□□□ -0.63
CD44-228ENST00000528455 MBD5Q9P267 1494 aa11.1□□□□□ -0.63
CD44-228ENST00000528455 SAMD9LQ8IVG5 1584 aa11.09□□□□□ -0.63
CD44-228ENST00000528455 PLCG2P16885 1265 aa11.09□□□□□ -0.63
CD44-228ENST00000528455 AFAP1Q8N556 730 aa11.09□□□□□ -0.63
CD44-228ENST00000528455 MYT1LQ9UL68 1186 aa11.09□□□□□ -0.63
CD44-228ENST00000528455 ADAMTSL3P82987 1691 aa11.08□□□□□ -0.64
CD44-228ENST00000528455 ARHGEF5Q12774 1597 aa11.08□□□□□ -0.64
CD44-228ENST00000528455 ZNF518AQ6AHZ1 1483 aa11.08□□□□□ -0.64
CD44-228ENST00000528455 SEC24BO95487 1268 aa11.08□□□□□ -0.64
CD44-228ENST00000528455 ITGAEP38570 1179 aa11.08□□□□□ -0.64
CD44-228ENST00000528455 ABCC5O15440 1437 aa11.08□□□□□ -0.64
CD44-228ENST00000528455 YEATS2Q9ULM3 1422 aa11.08□□□□□ -0.64
CD44-228ENST00000528455 BCORL1Q5H9F3 1711 aa11.07□□□□□ -0.64
CD44-228ENST00000528455 HRCP23327 699 aa11.07□□□□□ -0.64
CD44-228ENST00000528455 VSIG10Q8N0Z9 540 aa11.07□□□□□ -0.64
CD44-228ENST00000528455 KDM2AQ9Y2K7 1162 aa11.07□□□□□ -0.64
CD44-228ENST00000528455 ATP10AO60312 1499 aa11.06□□□□□ -0.64
CD44-228ENST00000528455 PTPRMP28827 1452 aa11.06□□□□□ -0.64
CD44-228ENST00000528455 DNMT1P26358 1616 aaKnown RBP11.06□□□□□ -0.64
CD44-228ENST00000528455 ARHGEF12Q9NZN5 1544 aa11.06□□□□□ -0.64
CD44-228ENST00000528455 CADPS2Q86UW7 1296 aa11.06□□□□□ -0.64
CD44-228ENST00000528455 DAPK1P53355 1430 aa11.06□□□□□ -0.64
CD44-228ENST00000528455 ACIN1Q9UKV3 1341 aaKnown RBP11.06□□□□□ -0.64
CD44-228ENST00000528455 RTEL1-TNFRSF6BF6WH68 1400 aa11.05□□□□□ -0.64
CD44-228ENST00000528455 MLECQ14165 292 aa11.05□□□□□ -0.64
CD44-228ENST00000528455 PTPRKQ15262 1439 aa11.05□□□□□ -0.64
CD44-228ENST00000528455 CHIC2Q9UKJ5 165 aa11.05□□□□□ -0.64
CD44-228ENST00000528455 ABCC1P33527 1531 aa11.04□□□□□ -0.64
CD44-228ENST00000528455 ROCK1Q13464 1354 aa11.04□□□□□ -0.64
CD44-228ENST00000528455 C9orf84Q5VXU9 1444 aa11.04□□□□□ -0.64
CD44-228ENST00000528455 TRAPPC8Q9Y2L5 1435 aa11.04□□□□□ -0.64
CD44-228ENST00000528455 CCDC141Q6ZP82 1450 aa11.04□□□□□ -0.64
CD44-228ENST00000528455 SPAG9O60271 1321 aaKnown RBP11.04□□□□□ -0.64
CD44-228ENST00000528455 KDM5CP41229 1560 aa11.03□□□□□ -0.64
CD44-228ENST00000528455 MADDQ8WXG6 1647 aa11.03□□□□□ -0.64
CD44-228ENST00000528455 MLH3Q9UHC1 1453 aa11.03□□□□□ -0.64
CD44-228ENST00000528455 SYCP2Q9BX26 1530 aa11.03□□□□□ -0.64
CD44-228ENST00000528455 HECW2Q9P2P5 1572 aa11.03□□□□□ -0.64
CD44-228ENST00000528455 ANKRD30AQ9BXX3 1397 aa11.03□□□□□ -0.64
CD44-228ENST00000528455 NCOA1Q15788 1441 aa11.02□□□□□ -0.64
CD44-228ENST00000528455 SHANK2Q9UPX8 1470 aa11.01□□□□□ -0.65
CD44-228ENST00000528455 MICALL2Q8IY33 904 aa11.01□□□□□ -0.65
CD44-228ENST00000528455 TMEM121BQ9BXQ6 578 aaPredicted RBP11.01□□□□□ -0.65
CD44-228ENST00000528455 RRP7BPQ9NSQ0 103 aa11.01□□□□□ -0.65
CD44-228ENST00000528455 MAST1Q9Y2H9 1570 aa11.01□□□□□ -0.65
CD44-228ENST00000528455 ADGRL2O95490 1459 aa11□□□□□ -0.65
CD44-228ENST00000528455 BOLA1Q9Y3E2 137 aa11□□□□□ -0.65
CD44-228ENST00000528455 RIMS1Q86UR5 1692 aaKnown RBP11□□□□□ -0.65
CD44-228ENST00000528455 SIGLEC1Q9BZZ2 1709 aa11□□□□□ -0.65
CD44-228ENST00000528455 SETD5Q9C0A6 1442 aa11□□□□□ -0.65
CD44-228ENST00000528455 CROCC2H7BZ55 1655 aa10.99□□□□□ -0.65
CD44-228ENST00000528455 L3MBTL3Q96JM7 780 aaPredicted RBP10.99□□□□□ -0.65
CD44-228ENST00000528455 HFM1A2PYH4 1435 aa10.98□□□□□ -0.65
CD44-228ENST00000528455 NAIPQ13075 1403 aa10.98□□□□□ -0.65
CD44-228ENST00000528455 DIP2CQ9Y2E4 1556 aa10.98□□□□□ -0.65
CD44-228ENST00000528455 ESF1Q9H501 851 aaKnown RBP10.97□□□□□ -0.65
CD44-228ENST00000528455 REREQ9P2R6 1566 aa10.97□□□□□ -0.65
CD44-228ENST00000528455 ADGBQ8N7X0 1667 aa10.97□□□□□ -0.65
CD44-228ENST00000528455 FER1L4A9Z1Z3 1794 aa10.97□□□□□ -0.65
CD44-228ENST00000528455 ABCA6Q8N139 1617 aa10.96□□□□□ -0.65
CD44-228ENST00000528455 KIDINS220Q9ULH0 1771 aa10.95□□□□□ -0.66
CD44-228ENST00000528455 DHX29Q7Z478 1369 aaKnown RBP10.95□□□□□ -0.66
CD44-228ENST00000528455 AGLP35573 1532 aa10.94□□□□□ -0.66
CD44-228ENST00000528455 ATP7AQ04656 1500 aa10.94□□□□□ -0.66
CD44-228ENST00000528455 KIF15Q9NS87 1388 aa10.94□□□□□ -0.66
CD44-228ENST00000528455 NCKAP5LQ9HCH0 1330 aa10.94□□□□□ -0.66
CD44-228ENST00000528455 G3V3G9 751 aa10.94□□□□□ -0.66
CD44-228ENST00000528455 PLXNC1O60486 1568 aa10.94□□□□□ -0.66
CD44-228ENST00000528455 DUOX2Q9NRD8 1548 aa10.94□□□□□ -0.66
CD44-228ENST00000528455 ANKRD50Q9ULJ7 1429 aa10.93□□□□□ -0.66
CD44-228ENST00000528455 RAB3GAP2Q9H2M9 1393 aa10.93□□□□□ -0.66
CD44-228ENST00000528455 CEBPAP49715 358 aaPredicted RBP10.93□□□□□ -0.66
CD44-228ENST00000528455 CRISPLD2Q9H0B8 497 aa10.93□□□□□ -0.66
CD44-228ENST00000528455 INO80Q9ULG1 1556 aaPredicted RBP10.93□□□□□ -0.66
CD44-228ENST00000528455 POTEB2H3BUK9 544 aa10.92□□□□□ -0.66
CD44-228ENST00000528455 LMTK3Q96Q04 1460 aa10.92□□□□□ -0.66
CD44-228ENST00000528455 GCC2Q8IWJ2 1684 aa10.91□□□□□ -0.66
CD44-228ENST00000528455 A2MP01023 1474 aa10.9□□□□□ -0.66
CD44-228ENST00000528455 POTEJP0CG39 1038 aa10.9□□□□□ -0.66
CD44-228ENST00000528455 PDE4AP27815 886 aa10.9□□□□□ -0.66
CD44-228ENST00000528455 ERBINQ96RT1 1412 aa10.9□□□□□ -0.66
CD44-228ENST00000528455 CNTLNQ9NXG0 1405 aa10.9□□□□□ -0.66
CD44-228ENST00000528455 SETD1BQ9UPS6 1966 aaKnown RBP10.9□□□□□ -0.66
CD44-228ENST00000528455 KIF3BO15066 747 aa10.89□□□□□ -0.67
CD44-228ENST00000528455 HSPA2P54652 639 aa10.89□□□□□ -0.67
CD44-228ENST00000528455 TRIM52Q96A61 297 aa10.89□□□□□ -0.67
CD44-228ENST00000528455 GGT6Q6P531 493 aa10.88□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms