RNA–Protein interactions for RNA: ENST00000522122.1

SYNPO-205, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene SYNPO, Length 5,098 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-205ENST00000522122 RRP7AQ9Y3A4 280 aaKnown RBP17.29■□□□□ 0.36
SYNPO-205ENST00000522122 GCC2Q8IWJ2 1684 aa17.29■□□□□ 0.36
SYNPO-205ENST00000522122 ERBINQ96RT1 1412 aa17.29■□□□□ 0.36
SYNPO-205ENST00000522122 TAOK2Q9UL54 1235 aa17.29■□□□□ 0.36
SYNPO-205ENST00000522122 CHAF1AQ13111 956 aaPredicted RBP17.29■□□□□ 0.36
SYNPO-205ENST00000522122 ARHGAP5Q13017 1502 aa17.28■□□□□ 0.36
SYNPO-205ENST00000522122 SAMD9Q5K651 1589 aa17.28■□□□□ 0.36
SYNPO-205ENST00000522122 KIF14Q15058 1648 aa17.27■□□□□ 0.36
SYNPO-205ENST00000522122 ADAMTS8Q9UP79 889 aa17.27■□□□□ 0.36
SYNPO-205ENST00000522122 STK31Q9BXU1 1019 aa17.27■□□□□ 0.35
SYNPO-205ENST00000522122 ITSN2Q9NZM3 1697 aa17.26■□□□□ 0.35
SYNPO-205ENST00000522122 RALGAPBQ86X10 1494 aa17.26■□□□□ 0.35
SYNPO-205ENST00000522122 APAF1O14727 1248 aa17.26■□□□□ 0.35
SYNPO-205ENST00000522122 HMMRO75330 724 aa17.26■□□□□ 0.35
SYNPO-205ENST00000522122 NFKBIBQ15653 356 aa17.26■□□□□ 0.35
SYNPO-205ENST00000522122 NUTM2DQ5VT03 806 aaPredicted RBP17.26■□□□□ 0.35
SYNPO-205ENST00000522122 PPP2R1AP30153 589 aa17.25■□□□□ 0.35
SYNPO-205ENST00000522122 WDR62O43379 1518 aa17.25■□□□□ 0.35
SYNPO-205ENST00000522122 LMOD3Q0VAK6 560 aa17.25■□□□□ 0.35
SYNPO-205ENST00000522122 BCL2L13Q9BXK5 485 aa17.25■□□□□ 0.35
SYNPO-205ENST00000522122 CHMP4AQ9BY43 222 aa17.24■□□□□ 0.35
SYNPO-205ENST00000522122 RAPGEF6Q8TEU7 1601 aa17.24■□□□□ 0.35
SYNPO-205ENST00000522122 NBPF1Q3BBV0 1214 aa17.23■□□□□ 0.35
SYNPO-205ENST00000522122 COG6Q9Y2V7 657 aa17.23■□□□□ 0.35
SYNPO-205ENST00000522122 AAMPQ13685 434 aa17.23■□□□□ 0.35
SYNPO-205ENST00000522122 ZBTB4Q9P1Z0 1013 aaPredicted RBP17.23■□□□□ 0.35
SYNPO-205ENST00000522122 ZKSCAN2Q63HK3 967 aa17.22■□□□□ 0.35
SYNPO-205ENST00000522122 DRC7Q8IY82 874 aa17.22■□□□□ 0.35
SYNPO-205ENST00000522122 SYAP1Q96A49 352 aaPredicted RBP17.22■□□□□ 0.35
SYNPO-205ENST00000522122 DNMT1P26358 1616 aaKnown RBP17.21■□□□□ 0.35
SYNPO-205ENST00000522122 CCDC141Q6ZP82 1450 aa17.21■□□□□ 0.34
SYNPO-205ENST00000522122 MAGI1Q96QZ7 1491 aaPredicted RBP17.21■□□□□ 0.34
SYNPO-205ENST00000522122 KIAA2012Q0VF49 1180 aa17.2■□□□□ 0.34
SYNPO-205ENST00000522122 SCAPERQ9BY12 1400 aa17.2■□□□□ 0.34
SYNPO-205ENST00000522122 GRIN2AQ12879 1464 aa17.2■□□□□ 0.34
SYNPO-205ENST00000522122 SLC4A10Q6U841 1118 aa17.2■□□□□ 0.34
SYNPO-205ENST00000522122 NINLQ9Y2I6 1382 aa17.19■□□□□ 0.34
SYNPO-205ENST00000522122 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.19■□□□□ 0.34
SYNPO-205ENST00000522122 TRIM6-TRIM34B2RNG4 842 aa17.19■□□□□ 0.34
SYNPO-205ENST00000522122 RSPH6AQ9H0K4 717 aa17.19■□□□□ 0.34
SYNPO-205ENST00000522122 FOXD4L1Q9NU39 408 aa17.19■□□□□ 0.34
SYNPO-205ENST00000522122 TEX14Q8IWB6 1497 aa17.18■□□□□ 0.34
SYNPO-205ENST00000522122 ADAMTS12P58397 1594 aa17.18■□□□□ 0.34
SYNPO-205ENST00000522122 VGFO15240 615 aaPredicted RBP17.17■□□□□ 0.34
SYNPO-205ENST00000522122 ABCA5Q8WWZ7 1642 aa17.17■□□□□ 0.34
SYNPO-205ENST00000522122 PLB1Q6P1J6 1458 aa17.17■□□□□ 0.34
SYNPO-205ENST00000522122 DDX11L8A8MPP1 907 aa17.17■□□□□ 0.34
SYNPO-205ENST00000522122 ARHGEF11O15085 1522 aa17.17■□□□□ 0.34
SYNPO-205ENST00000522122 EVC2Q86UK5 1308 aa17.16■□□□□ 0.34
SYNPO-205ENST00000522122 RUNDC1Q96C34 613 aa17.16■□□□□ 0.34
SYNPO-205ENST00000522122 HDAC5Q9UQL6 1122 aa17.16■□□□□ 0.34
SYNPO-205ENST00000522122 GPATCH8Q9UKJ3 1502 aaKnown RBP17.16■□□□□ 0.34
SYNPO-205ENST00000522122 ELL2O00472 640 aaPredicted RBP17.16■□□□□ 0.34
SYNPO-205ENST00000522122 ST18O60284 1047 aa17.16■□□□□ 0.34
SYNPO-205ENST00000522122 DHX29Q7Z478 1369 aaKnown RBP17.16■□□□□ 0.34
SYNPO-205ENST00000522122 NUP153P49790 1475 aaKnown RBP17.15■□□□□ 0.34
SYNPO-205ENST00000522122 ANKRD45Q5TZF3 282 aa17.15■□□□□ 0.34
SYNPO-205ENST00000522122 KIAA0556O60303 1618 aa17.14■□□□□ 0.33
SYNPO-205ENST00000522122 ARHGEF12Q9NZN5 1544 aa17.14■□□□□ 0.33
SYNPO-205ENST00000522122 HTATSF1O43719 755 aaKnown RBP17.13■□□□□ 0.33
SYNPO-205ENST00000522122 PDE3AQ14432 1141 aa17.12■□□□□ 0.33
SYNPO-205ENST00000522122 NGDNQ8NEJ9 315 aaKnown RBP17.12■□□□□ 0.33
SYNPO-205ENST00000522122 DDX19BQ9UMR2 479 aa17.11■□□□□ 0.33
SYNPO-205ENST00000522122 AMPHP49418 695 aa17.11■□□□□ 0.33
SYNPO-205ENST00000522122 GPATCH3Q96I76 525 aa17.11■□□□□ 0.33
SYNPO-205ENST00000522122 PZPP20742 1482 aa17.11■□□□□ 0.33
SYNPO-205ENST00000522122 NPHP1O15259 732 aa17.11■□□□□ 0.33
SYNPO-205ENST00000522122 NOL8Q76FK4 1167 aaKnown RBP17.1■□□□□ 0.33
SYNPO-205ENST00000522122 PANK1Q8TE04 598 aa17.1■□□□□ 0.33
SYNPO-205ENST00000522122 DZIP1LQ8IYY4 767 aaKnown RBP17.1■□□□□ 0.33
SYNPO-205ENST00000522122 MAGI3Q5TCQ9 1506 aa17.09■□□□□ 0.33
SYNPO-205ENST00000522122 GNL2Q13823 731 aaKnown RBP17.09■□□□□ 0.33
SYNPO-205ENST00000522122 IL27Q8NEV9 243 aa17.09■□□□□ 0.33
SYNPO-205ENST00000522122 PARD3Q8TEW0 1356 aa17.08■□□□□ 0.32
SYNPO-205ENST00000522122 PBRM1Q86U86 1689 aa17.08■□□□□ 0.32
SYNPO-205ENST00000522122 DDX49Q9Y6V7 483 aaKnown RBP17.08■□□□□ 0.32
SYNPO-205ENST00000522122 UHRF1BP1Q6BDS2 1440 aa17.08■□□□□ 0.32
SYNPO-205ENST00000522122 SLFN5Q08AF3 891 aa17.08■□□□□ 0.32
SYNPO-205ENST00000522122 SHANK2Q9UPX8 1470 aa17.08■□□□□ 0.32
SYNPO-205ENST00000522122 NUTM2FA1L443 756 aa17.07■□□□□ 0.32
SYNPO-205ENST00000522122 CSPP1Q1MSJ5 1256 aa17.07■□□□□ 0.32
SYNPO-205ENST00000522122 CSB-PGBD3P0DP91 1061 aa17.07■□□□□ 0.32
SYNPO-205ENST00000522122 SKOR2Q2VWA4 1001 aaPredicted RBP17.07■□□□□ 0.32
SYNPO-205ENST00000522122 COG3Q96JB2 828 aa17.07■□□□□ 0.32
SYNPO-205ENST00000522122 CHMP5Q9NZZ3 219 aa17.07■□□□□ 0.32
SYNPO-205ENST00000522122 EID1Q9Y6B2 187 aa17.06■□□□□ 0.32
SYNPO-205ENST00000522122 DIAPH1O60610 1272 aaKnown RBP17.06■□□□□ 0.32
SYNPO-205ENST00000522122 MINK1Q8N4C8 1332 aaPredicted RBP17.06■□□□□ 0.32
SYNPO-205ENST00000522122 ADGBQ8N7X0 1667 aa17.06■□□□□ 0.32
SYNPO-205ENST00000522122 RNF123Q5XPI4 1314 aa17.05■□□□□ 0.32
SYNPO-205ENST00000522122 ADGRL2O95490 1459 aa17.05■□□□□ 0.32
SYNPO-205ENST00000522122 FRAT2O75474 233 aaPredicted RBP17.05■□□□□ 0.32
SYNPO-205ENST00000522122 DISP3Q9P2K9 1392 aa17.05■□□□□ 0.32
SYNPO-205ENST00000522122 BCAR3O75815 825 aa17.05■□□□□ 0.32
SYNPO-205ENST00000522122 RIPK4P57078 832 aa17.05■□□□□ 0.32
SYNPO-205ENST00000522122 BRPF3Q9ULD4 1205 aa17.05■□□□□ 0.32
SYNPO-205ENST00000522122 PHF14O94880 888 aa17.04■□□□□ 0.32
SYNPO-205ENST00000522122 EIF2AK4Q9P2K8 1649 aaKnown RBP17.04■□□□□ 0.32
SYNPO-205ENST00000522122 LTV1Q96GA3 475 aaPredicted RBP17.04■□□□□ 0.32
SYNPO-205ENST00000522122 NKTRP30414 1462 aaKnown RBP17.04■□□□□ 0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.6 ms