RNA–Protein interactions for RNA: ENST00000520234.1

HMGB1P41-201, Transcript of high mobility group box 1 pseudogene 41, humanhuman

BASIC

Gene HMGB1P41, Length 440 nt, Biotype processed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1P41-201ENST00000520234 ANKLE1Q8NAG6 615 aa8.07□□□□□ -1.12
HMGB1P41-201ENST00000520234 NBPF26B4DH59 902 aa8.06□□□□□ -1.12
HMGB1P41-201ENST00000520234 SMAPO00193 183 aa8.06□□□□□ -1.12
HMGB1P41-201ENST00000520234 GMPR2Q9P2T1 348 aaKnown RBP8.05□□□□□ -1.12
HMGB1P41-201ENST00000520234 CDCA7LQ96GN5 454 aa8.04□□□□□ -1.12
HMGB1P41-201ENST00000520234 EN1Q05925 392 aaPredicted RBP8.03□□□□□ -1.12
HMGB1P41-201ENST00000520234 LMOD2Q6P5Q4 547 aa8.03□□□□□ -1.12
HMGB1P41-201ENST00000520234 LIAT1Q6ZQX7 453 aa8.03□□□□□ -1.12
HMGB1P41-201ENST00000520234 CADPS2Q86UW7 1296 aa8.03□□□□□ -1.12
HMGB1P41-201ENST00000520234 TATDN2Q93075 761 aa8.03□□□□□ -1.12
HMGB1P41-201ENST00000520234 AVPP01185 164 aa8.02□□□□□ -1.13
HMGB1P41-201ENST00000520234 PRSS12P56730 875 aa8.02□□□□□ -1.13
HMGB1P41-201ENST00000520234 DACH1Q9UI36 760 aa8.02□□□□□ -1.13
HMGB1P41-201ENST00000520234 LCE2CQ5TA81 110 aa8.01□□□□□ -1.13
HMGB1P41-201ENST00000520234 WDR70Q9NW82 654 aa8.01□□□□□ -1.13
HMGB1P41-201ENST00000520234 PNMA3Q9UL41 463 aa8.01□□□□□ -1.13
HMGB1P41-201ENST00000520234 TERTO14746 1132 aaKnown RBP8□□□□□ -1.13
HMGB1P41-201ENST00000520234 AXIN1O15169 862 aa8□□□□□ -1.13
HMGB1P41-201ENST00000520234 MAP3K7O43318 606 aa8□□□□□ -1.13
HMGB1P41-201ENST00000520234 CTC1Q2NKJ3 1217 aa8□□□□□ -1.13
HMGB1P41-201ENST00000520234 TSR1Q2NL82 804 aaKnown RBP8□□□□□ -1.13
HMGB1P41-201ENST00000520234 PRR14Q9BWN1 585 aa8□□□□□ -1.13
HMGB1P41-201ENST00000520234 SLF2Q8IX21 1173 aa7.99□□□□□ -1.13
HMGB1P41-201ENST00000520234 CERKQ8TCT0 537 aa7.99□□□□□ -1.13
HMGB1P41-201ENST00000520234 FAM198AQ9UFP1 575 aa7.99□□□□□ -1.13
HMGB1P41-201ENST00000520234 C3orf80F5H4A9 247 aa7.97□□□□□ -1.13
HMGB1P41-201ENST00000520234 DDX12PQ92771 950 aa7.97□□□□□ -1.13
HMGB1P41-201ENST00000520234 PCDHB3Q9Y5E6 796 aa7.97□□□□□ -1.13
HMGB1P41-201ENST00000520234 SMCPP49901 116 aaPredicted RBP7.96□□□□□ -1.14
HMGB1P41-201ENST00000520234 NBR1Q14596 966 aa7.96□□□□□ -1.14
HMGB1P41-201ENST00000520234 SLC4A3P48751 1232 aa7.95□□□□□ -1.14
HMGB1P41-201ENST00000520234 P3H3Q8IVL6 736 aa7.95□□□□□ -1.14
HMGB1P41-201ENST00000520234 PKD2L1Q9P0L9 805 aa7.95□□□□□ -1.14
HMGB1P41-201ENST00000520234 PPEF1O14829 653 aaPredicted RBP7.94□□□□□ -1.14
HMGB1P41-201ENST00000520234 S1PR4O95977 384 aa7.94□□□□□ -1.14
HMGB1P41-201ENST00000520234 TLL1O43897 1013 aa7.93□□□□□ -1.14
HMGB1P41-201ENST00000520234 BLOC1S3Q6QNY0 202 aa7.93□□□□□ -1.14
HMGB1P41-201ENST00000520234 NUDT18Q6ZVK8 323 aa7.93□□□□□ -1.14
HMGB1P41-201ENST00000520234 BCANQ96GW7 911 aa7.93□□□□□ -1.14
HMGB1P41-201ENST00000520234 DPYSL4O14531 572 aa7.92□□□□□ -1.14
HMGB1P41-201ENST00000520234 FOXC1Q12948 553 aa7.92□□□□□ -1.14
HMGB1P41-201ENST00000520234 CAMK2BQ13554 666 aa7.92□□□□□ -1.14
HMGB1P41-201ENST00000520234 ZSCAN1Q8NBB4 408 aa7.92□□□□□ -1.14
HMGB1P41-201ENST00000520234 SWT1Q5T5J6 900 aaKnown RBP7.91□□□□□ -1.14
HMGB1P41-201ENST00000520234 TOR4AQ9NXH8 423 aa7.91□□□□□ -1.14
HMGB1P41-201ENST00000520234 RBM27Q9P2N5 1060 aaKnown RBP7.91□□□□□ -1.14
HMGB1P41-201ENST00000520234 E2F4Q16254 413 aa7.9□□□□□ -1.14
HMGB1P41-201ENST00000520234 SENP2Q9HC62 589 aa7.89□□□□□ -1.15
HMGB1P41-201ENST00000520234 SNRPBP14678 240 aaKnown RBP7.88□□□□□ -1.15
HMGB1P41-201ENST00000520234 LORP23490 312 aaPredicted RBP7.88□□□□□ -1.15
HMGB1P41-201ENST00000520234 TRIM47Q96LD4 638 aa7.88□□□□□ -1.15
HMGB1P41-201ENST00000520234 PLA2G2CQ5R387 149 aa7.87□□□□□ -1.15
HMGB1P41-201ENST00000520234 CYP4X1Q8N118 509 aa7.87□□□□□ -1.15
HMGB1P41-201ENST00000520234 SLC16A10Q8TF71 515 aa7.87□□□□□ -1.15
HMGB1P41-201ENST00000520234 ADH1BP00325 375 aa7.86□□□□□ -1.15
HMGB1P41-201ENST00000520234 KCNV2Q8TDN2 545 aa7.86□□□□□ -1.15
HMGB1P41-201ENST00000520234 ARHGEF1Q92888 912 aaKnown RBP7.86□□□□□ -1.15
HMGB1P41-201ENST00000520234 ATP13A2Q9NQ11 1180 aa7.86□□□□□ -1.15
HMGB1P41-201ENST00000520234 ARIH1Q9Y4X5 557 aaPredicted RBP7.84□□□□□ -1.15
HMGB1P41-201ENST00000520234 RPIAP49247 311 aa7.83□□□□□ -1.16
HMGB1P41-201ENST00000520234 KIFC2Q96AC6 838 aa7.83□□□□□ -1.16
HMGB1P41-201ENST00000520234 SLC6A16Q9GZN6 736 aa7.83□□□□□ -1.16
HMGB1P41-201ENST00000520234 GMPRP36959 345 aa7.82□□□□□ -1.16
HMGB1P41-201ENST00000520234 PDIA6Q15084 440 aa7.81□□□□□ -1.16
HMGB1P41-201ENST00000520234 IRF7Q92985 503 aa7.8□□□□□ -1.16
HMGB1P41-201ENST00000520234 ACTN4O43707 911 aaKnown RBP7.79□□□□□ -1.16
HMGB1P41-201ENST00000520234 CD2BP2O95400 341 aaKnown RBP7.79□□□□□ -1.16
HMGB1P41-201ENST00000520234 TTC13Q8NBP0 860 aa7.79□□□□□ -1.16
HMGB1P41-201ENST00000520234 NR1I2O75469 434 aa7.78□□□□□ -1.16
HMGB1P41-201ENST00000520234 KMT5BQ4FZB7 885 aa7.78□□□□□ -1.16
HMGB1P41-201ENST00000520234 NPAS3Q8IXF0 933 aa7.78□□□□□ -1.16
HMGB1P41-201ENST00000520234 NXF1Q9UBU9 619 aaKnown RBP7.78□□□□□ -1.16
HMGB1P41-201ENST00000520234 TTC24A2A3L6 582 aaPredicted RBP7.77□□□□□ -1.17
HMGB1P41-201ENST00000520234 SPDYE16A6NNV3 312 aaPredicted RBP7.77□□□□□ -1.17
HMGB1P41-201ENST00000520234 PRIM1P49642 420 aaKnown RBP7.76□□□□□ -1.17
HMGB1P41-201ENST00000520234 KCTD17Q8N5Z5 321 aa7.76□□□□□ -1.17
HMGB1P41-201ENST00000520234 KCNMA1Q12791 1236 aa7.75□□□□□ -1.17
HMGB1P41-201ENST00000520234 CDHR5Q9HBB8 845 aa7.75□□□□□ -1.17
HMGB1P41-201ENST00000520234 EYA1Q99502 592 aa7.74□□□□□ -1.17
HMGB1P41-201ENST00000520234 TULP1O00294 542 aaPredicted RBP7.73□□□□□ -1.17
HMGB1P41-201ENST00000520234 SMPD1P17405 629 aa7.73□□□□□ -1.17
HMGB1P41-201ENST00000520234 PADI6Q6TGC4 694 aa7.73□□□□□ -1.17
HMGB1P41-201ENST00000520234 SMYD5Q6GMV2 418 aa7.71□□□□□ -1.18
HMGB1P41-201ENST00000520234 SNIP1Q8TAD8 396 aaKnown RBP7.71□□□□□ -1.18
HMGB1P41-201ENST00000520234 TESPA1A2RU30 521 aaPredicted RBP7.7□□□□□ -1.18
HMGB1P41-201ENST00000520234 CFHP08603 1231 aa7.7□□□□□ -1.18
HMGB1P41-201ENST00000520234 H3BM21 787 aa7.69□□□□□ -1.18
HMGB1P41-201ENST00000520234 SEMA3EO15041 775 aa7.69□□□□□ -1.18
HMGB1P41-201ENST00000520234 GRXCR2A6NFK2 248 aa7.68□□□□□ -1.18
HMGB1P41-201ENST00000520234 DNAJB2P25686 324 aa7.68□□□□□ -1.18
HMGB1P41-201ENST00000520234 GSK3AP49840 483 aa7.68□□□□□ -1.18
HMGB1P41-201ENST00000520234 SPSB2Q99619 263 aa7.68□□□□□ -1.18
HMGB1P41-201ENST00000520234 WNT7AO00755 349 aa7.67□□□□□ -1.18
HMGB1P41-201ENST00000520234 SCUBE3Q8IX30 993 aa7.67□□□□□ -1.18
HMGB1P41-201ENST00000520234 TMEM151AQ8N4L1 468 aa7.67□□□□□ -1.18
HMGB1P41-201ENST00000520234 FCF1Q9Y324 198 aaKnown RBP7.67□□□□□ -1.18
HMGB1P41-201ENST00000520234 OSBPP22059 807 aa7.66□□□□□ -1.18
HMGB1P41-201ENST00000520234 ERBB4Q15303 1308 aa7.65□□□□□ -1.18
HMGB1P41-201ENST00000520234 TMEM134Q9H6X4 195 aa7.65□□□□□ -1.18
HMGB1P41-201ENST00000520234 NPDC1Q9NQX5 325 aaPredicted RBP7.65□□□□□ -1.18
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms