RNA–Protein interactions for RNA: ENST00000519895.5

MCF2-208, Transcript of MCF.2 cell line derived transforming sequence, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene MCF2, Length 3,346 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MCF2-208ENST00000519895 ADAMTS7Q9UKP4 1686 aa4.7□□□□□ -1.66
MCF2-208ENST00000519895 KCNQ2O43526 872 aa4.69□□□□□ -1.66
MCF2-208ENST00000519895 CHRDL2Q6WN34 429 aa4.69□□□□□ -1.66
MCF2-208ENST00000519895 CCDC18Q5T9S5 1454 aa4.69□□□□□ -1.66
MCF2-208ENST00000519895 MLECQ14165 292 aa4.69□□□□□ -1.66
MCF2-208ENST00000519895 PPP1R1BQ9UD71 204 aaPredicted RBP4.69□□□□□ -1.66
MCF2-208ENST00000519895 NKTRP30414 1462 aaKnown RBP4.69□□□□□ -1.66
MCF2-208ENST00000519895 ANKLE2Q86XL3 938 aa4.69□□□□□ -1.66
MCF2-208ENST00000519895 NUP188Q5SRE5 1749 aa4.69□□□□□ -1.66
MCF2-208ENST00000519895 ABCC1P33527 1531 aa4.68□□□□□ -1.66
MCF2-208ENST00000519895 FYCO1Q9BQS8 1478 aa4.68□□□□□ -1.66
MCF2-208ENST00000519895 NRKQ7Z2Y5 1582 aa4.67□□□□□ -1.66
MCF2-208ENST00000519895 FAM9AQ8IZU1 332 aaPredicted RBP4.67□□□□□ -1.66
MCF2-208ENST00000519895 ESF1Q9H501 851 aaKnown RBP4.67□□□□□ -1.66
MCF2-208ENST00000519895 RGPD3A6NKT7 1758 aaPredicted RBP4.67□□□□□ -1.66
MCF2-208ENST00000519895 RGPD4Q7Z3J3 1758 aa4.67□□□□□ -1.66
MCF2-208ENST00000519895 MARF1Q9Y4F3 1742 aaKnown RBP4.67□□□□□ -1.66
MCF2-208ENST00000519895 CASKIN1Q8WXD9 1431 aa4.67□□□□□ -1.66
MCF2-208ENST00000519895 ZMYM3Q14202 1370 aa4.67□□□□□ -1.66
MCF2-208ENST00000519895 NLRP1Q9C000 1473 aa4.67□□□□□ -1.66
MCF2-208ENST00000519895 USP32Q8NFA0 1604 aa4.66□□□□□ -1.66
MCF2-208ENST00000519895 ADCY9O60503 1353 aa4.66□□□□□ -1.66
MCF2-208ENST00000519895 ITSN2Q9NZM3 1697 aa4.66□□□□□ -1.66
MCF2-208ENST00000519895 DEFB132Q7Z7B7 95 aa4.66□□□□□ -1.66
MCF2-208ENST00000519895 MYOM1P52179 1685 aa4.66□□□□□ -1.66
MCF2-208ENST00000519895 ABCC5O15440 1437 aa4.66□□□□□ -1.66
MCF2-208ENST00000519895 MNX1P50219 401 aaPredicted RBP4.66□□□□□ -1.66
MCF2-208ENST00000519895 FNBP4Q8N3X1 1017 aaPredicted RBP4.66□□□□□ -1.66
MCF2-208ENST00000519895 LAMC1P11047 1609 aa4.65□□□□□ -1.66
MCF2-208ENST00000519895 MLH3Q9UHC1 1453 aa4.65□□□□□ -1.66
MCF2-208ENST00000519895 EFCAB6Q5THR3 1501 aa4.65□□□□□ -1.66
MCF2-208ENST00000519895 R3HDM1Q15032 1099 aaKnown RBP4.65□□□□□ -1.66
MCF2-208ENST00000519895 PRDM15P57071 1507 aaPredicted RBP4.65□□□□□ -1.67
MCF2-208ENST00000519895 COL22A1Q8NFW1 1626 aaPredicted RBP4.65□□□□□ -1.67
MCF2-208ENST00000519895 ARHGAP35Q9NRY4 1499 aa4.65□□□□□ -1.67
MCF2-208ENST00000519895 SNX27Q96L92 541 aa4.64□□□□□ -1.67
MCF2-208ENST00000519895 ARHGEF28Q8N1W1 1705 aaKnown RBP4.64□□□□□ -1.67
MCF2-208ENST00000519895 ABCA6Q8N139 1617 aa4.64□□□□□ -1.67
MCF2-208ENST00000519895 CLTCQ00610 1675 aaKnown RBP4.64□□□□□ -1.67
MCF2-208ENST00000519895 SAMD9LQ8IVG5 1584 aa4.64□□□□□ -1.67
MCF2-208ENST00000519895 ZNF518AQ6AHZ1 1483 aa4.64□□□□□ -1.67
MCF2-208ENST00000519895 ATP10DQ9P241 1426 aa4.64□□□□□ -1.67
MCF2-208ENST00000519895 NUP153P49790 1475 aaKnown RBP4.63□□□□□ -1.67
MCF2-208ENST00000519895 HSPA1AP0DMV8 641 aaKnown RBP4.62□□□□□ -1.67
MCF2-208ENST00000519895 HSPA1BP0DMV9 641 aaKnown RBP4.62□□□□□ -1.67
MCF2-208ENST00000519895 KCNH8Q96L42 1107 aa4.62□□□□□ -1.67
MCF2-208ENST00000519895 ABHD8Q96I13 439 aa4.62□□□□□ -1.67
MCF2-208ENST00000519895 SRCAPQ6ZRS2 3230 aa4.62□□□□□ -1.67
MCF2-208ENST00000519895 COL24A1Q17RW2 1714 aa4.61□□□□□ -1.67
MCF2-208ENST00000519895 EHBP1L1Q8N3D4 1523 aa4.61□□□□□ -1.67
MCF2-208ENST00000519895 ZBTB22O15209 634 aa4.61□□□□□ -1.67
MCF2-208ENST00000519895 GLI3P10071 1580 aa4.61□□□□□ -1.67
MCF2-208ENST00000519895 THEMISQ8N1K5 641 aaPredicted RBP4.61□□□□□ -1.67
MCF2-208ENST00000519895 C10orf71Q711Q0 1435 aa4.61□□□□□ -1.67
MCF2-208ENST00000519895 MSH6P52701 1360 aa4.6□□□□□ -1.67
MCF2-208ENST00000519895 CAMSAP2Q08AD1 1489 aa4.6□□□□□ -1.67
MCF2-208ENST00000519895 PLEKHH2Q8IVE3 1493 aa4.6□□□□□ -1.67
MCF2-208ENST00000519895 NCBP3Q53F19 620 aaKnown RBP4.6□□□□□ -1.67
MCF2-208ENST00000519895 GPBP1L1Q9HC44 474 aaPredicted RBP4.6□□□□□ -1.67
MCF2-208ENST00000519895 SLAIN2Q9P270 581 aa4.6□□□□□ -1.67
MCF2-208ENST00000519895 TROQ12816 1431 aaPredicted RBP4.6□□□□□ -1.67
MCF2-208ENST00000519895 CEP162Q5TB80 1403 aa4.6□□□□□ -1.67
MCF2-208ENST00000519895 PREX2Q70Z35 1606 aa4.59□□□□□ -1.67
MCF2-208ENST00000519895 A2MP01023 1474 aa4.59□□□□□ -1.67
MCF2-208ENST00000519895 CLIP1P30622 1438 aa4.59□□□□□ -1.67
MCF2-208ENST00000519895 ABCA3Q99758 1704 aa4.59□□□□□ -1.67
MCF2-208ENST00000519895 VPS8Q8N3P4 1428 aa4.59□□□□□ -1.67
MCF2-208ENST00000519895 FSTL1Q12841 308 aa4.59□□□□□ -1.67
MCF2-208ENST00000519895 LRRIQ1Q96JM4 1722 aa4.59□□□□□ -1.67
MCF2-208ENST00000519895 MYO5CQ9NQX4 1742 aa4.59□□□□□ -1.67
MCF2-208ENST00000519895 UGGT1Q9NYU2 1555 aa4.59□□□□□ -1.67
MCF2-208ENST00000519895 NBPF8Q3BBV2 869 aa4.59□□□□□ -1.68
MCF2-208ENST00000519895 NBPF14Q5TI25 921 aa4.59□□□□□ -1.68
MCF2-208ENST00000519895 PLSCR2Q9NRY7 297 aa4.59□□□□□ -1.68
MCF2-208ENST00000519895 TMEM131LA2VDJ0 1609 aa4.59□□□□□ -1.68
MCF2-208ENST00000519895 MAST1Q9Y2H9 1570 aa4.58□□□□□ -1.68
MCF2-208ENST00000519895 TULP4Q9NRJ4 1543 aa4.58□□□□□ -1.68
MCF2-208ENST00000519895 KIAA1107Q9UPP5 1409 aa4.58□□□□□ -1.68
MCF2-208ENST00000519895 TMEM94Q12767 1356 aa4.58□□□□□ -1.68
MCF2-208ENST00000519895 ONECUT3O60422 494 aaPredicted RBP4.58□□□□□ -1.68
MCF2-208ENST00000519895 COL26A1Q96A83 441 aa4.58□□□□□ -1.68
MCF2-208ENST00000519895 USP21Q9UK80 565 aa4.58□□□□□ -1.68
MCF2-208ENST00000519895 SLIT1O75093 1534 aa4.58□□□□□ -1.68
MCF2-208ENST00000519895 ARHGEF5Q12774 1597 aa4.58□□□□□ -1.68
MCF2-208ENST00000519895 TOMM70O94826 608 aa4.57□□□□□ -1.68
MCF2-208ENST00000519895 RBM46Q8TBY0 533 aaKnown RBP4.57□□□□□ -1.68
MCF2-208ENST00000519895 PLCH2O75038 1416 aa4.57□□□□□ -1.68
MCF2-208ENST00000519895 SCAPERQ9BY12 1400 aa4.57□□□□□ -1.68
MCF2-208ENST00000519895 PNPLA6Q8IY17 1366 aa4.57□□□□□ -1.68
MCF2-208ENST00000519895 ASXL1Q8IXJ9 1541 aa4.57□□□□□ -1.68
MCF2-208ENST00000519895 GRIN3BO60391 1043 aa4.57□□□□□ -1.68
MCF2-208ENST00000519895 PPP4R3CPQ6ZMV5 832 aa4.57□□□□□ -1.68
MCF2-208ENST00000519895 CDK11AQ9UQ88 783 aaPredicted RBP4.57□□□□□ -1.68
MCF2-208ENST00000519895 MIA2Q96PC5 1412 aa4.57□□□□□ -1.68
MCF2-208ENST00000519895 ACIN1Q9UKV3 1341 aaKnown RBP4.57□□□□□ -1.68
MCF2-208ENST00000519895 PLA2G5P39877 138 aa4.57□□□□□ -1.68
MCF2-208ENST00000519895 LHX8Q68G74 356 aa4.57□□□□□ -1.68
MCF2-208ENST00000519895 MEGF6O75095 1541 aa4.57□□□□□ -1.68
MCF2-208ENST00000519895 KIF3CO14782 793 aa4.56□□□□□ -1.68
MCF2-208ENST00000519895 GJD4Q96KN9 370 aaPredicted RBP4.56□□□□□ -1.68
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms